CF504347

Overview
NameCF504347
Unique NameCF504347
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length362
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CF504347 vs. ExPASy Swiss-Prot
Match: HOX23_ORYSJ (Homeobox-leucine zipper protein HOX23 OS=Oryza sativa subsp. japonica GN=HOX23 PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.787e-11
Identity = 36/80 (45.00%), Postives = 44/80 (55.00%), Query Frame = 2 
Query:  113 ERSLRLSKDQSAILEESFKEHNTLNPXXXXXXXXXXGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRL 352
            E+  RLS +Q   LE SF+  N L P          GL+PRQV +WFQNRRAR K KQ E D + L+R  +    EN  L
Sbjct:  103 EKKRRLSVEQVRTLERSFESGNKLEPERKAQLARALGLQPRQVAIWFQNRRARWKTKQLEKDFDALRRQLDAARAENDAL 182
[Close]
BLAST of CF504347 vs. ExPASy Swiss-Prot
Match: HOX23_ORYSI (Homeobox-leucine zipper protein HOX23 OS=Oryza sativa subsp. indica GN=HOX23 PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.787e-11
Identity = 36/80 (45.00%), Postives = 44/80 (55.00%), Query Frame = 2 
Query:  113 ERSLRLSKDQSAILEESFKEHNTLNPXXXXXXXXXXGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRL 352
            E+  RLS +Q   LE SF+  N L P          GL+PRQV +WFQNRRAR K KQ E D + L+R  +    EN  L
Sbjct:  103 EKKRRLSVEQVRTLERSFESGNKLEPERKAQLARALGLQPRQVAIWFQNRRARWKTKQLEKDFDALRRQLDAARAENDAL 182
The following BLAST results are available for this feature:
BLAST of CF504347 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
HOX23_ORYSJ9.787e-1145.00Homeobox-leucine zipper protein HOX23 OS=Oryza sat... [more]
HOX23_ORYSI9.787e-1145.00Homeobox-leucine zipper protein HOX23 OS=Oryza sat... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-836 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-17_C05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504347 ID=CF504347; Name=CF504347; organism=Citrus sinensis; type=EST; length=362bp
TTTCGAGCGTTAGCGGCAAGAGAAGCGAGCGGGAACCTAATGGAGATGAG
CTCGAAATGGAGAGAGCTTGCTCTCGTGGTATCAGCGACGAAGAGGATGG
TGACACCTTCAAGAAAGAAGCCTGAGACTTTCTAAAGATCAGTCAGCCAT
TCTTGAAGAGAGCTTCAAAGAGCACAACACTCTCAACCCAAAGCAAAAGT
TGGCGTTGGCAAAGCAGCTTGGTCTCAGACCTAGACAGGTGGAAGTGTGG
TTCCAGAACAGAAGGGCAAGGACCAAATTGAAGCAAACTGAGGTTGACTG
CGAATTCTTGAAGAGATGCTGTGAGAATCTGACGGAGGAGAACAGGCGGT
TGCAGAAAGAAG
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