CF504355

Overview
NameCF504355
Unique NameCF504355
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length316
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504355 vs. ExPASy Swiss-Prot
Match: ERF5_NICSY (Ethylene-responsive transcription factor 5 OS=Nicotiana sylvestris GN=ERF5 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.296e-12
Identity = 40/95 (42.11%), Postives = 60/95 (63.16%), Query Frame = 2
Query:   41 RVNSIQHHSSKSRIPIT*NPLKMVKHVVEK----PAERCDSRYKGVRKRKWGKYVSEIRLPNSRA-RIWLGSYDTAEKAARAFDAALFCLRGRSA 310
            R +S++  S K R P     + + + VV+K    P E+    Y+GVR+R WGK+ +EIR PN +  R+WLG++DTA +AA+A+D A + LRG  A
Sbjct:   98 RSSSLKQTSFKERKPSLNIAIPVKQEVVQKVELAPTEK--KHYRGVRQRPWGKFAAEIRDPNRKGTRVWLGTFDTAIEAAKAYDRAAYKLRGSKA 190          
BLAST of CF504355 vs. ExPASy Swiss-Prot
Match: ERF3_TOBAC (Ethylene-responsive transcription factor 3 OS=Nicotiana tabacum GN=ERF3 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.296e-12
Identity = 31/54 (57.41%), Postives = 42/54 (77.78%), Query Frame = 2
Query:  152 RYKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSAK 313
            R++GVRKR WG++ +EIR P  + R+WLG++D+AE AARA+DAA   LRG  AK
Sbjct:   27 RFRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSAEDAARAYDAAARALRGPKAK 80          
BLAST of CF504355 vs. ExPASy Swiss-Prot
Match: EF102_ARATH (Ethylene-responsive transcription factor 5 OS=Arabidopsis thaliana GN=ERF5 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.296e-12
Identity = 37/68 (54.41%), Postives = 48/68 (70.59%), Query Frame = 2
Query:  113 KHVVEKP-AERCDSRYKGVRKRKWGKYVSEIRLPNSR-ARIWLGSYDTAEKAARAFDAALFCLRGRSA 310
            K  V KP +E     Y+GVR+R WGK+ +EIR PN R +R+WLG++DTA +AARA+D A F LRG  A
Sbjct:  141 KPEVTKPVSEEEKKHYRGVRQRPWGKFAAEIRDPNKRGSRVWLGTFDTAIEAARAYDEAAFRLRGSKA 208          
BLAST of CF504355 vs. ExPASy Swiss-Prot
Match: ERF4_TOBAC (Ethylene-responsive transcription factor 4 OS=Nicotiana tabacum GN=ERF4 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 2.998e-12
Identity = 30/53 (56.60%), Postives = 41/53 (77.36%), Query Frame = 2
Query:  155 YKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSAK 313
            Y+GVRKR WG+Y +EIR P  ++R+WLG++DTAE+AA+A+D A    RG  AK
Sbjct:   27 YRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAAKAYDTAAREFRGPKAK 79          
BLAST of CF504355 vs. ExPASy Swiss-Prot
Match: ERF4_NICSY (Ethylene-responsive transcription factor 4 OS=Nicotiana sylvestris GN=ERF4 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 2.998e-12
Identity = 30/53 (56.60%), Postives = 41/53 (77.36%), Query Frame = 2
Query:  155 YKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSAK 313
            Y+GVRKR WG+Y +EIR P  ++R+WLG++DTAE+AA+A+D A    RG  AK
Sbjct:   27 YRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAAKAYDTAAREFRGPKAK 79          
BLAST of CF504355 vs. ExPASy Swiss-Prot
Match: DRE1C_ARATH (Dehydration-responsive element-binding protein 1C OS=Arabidopsis thaliana GN=DREB1C PE=2 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 2.998e-12
Identity = 38/75 (50.67%), Postives = 47/75 (62.67%), Query Frame = 2
Query:  104 KMVKHVVEKPAERCDSR------YKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSA 310
            K+     +KPA R   R      Y+GVR+R  GK+V E+R PN + RIWLG++ TAE AARA D A   LRGRSA
Sbjct:   28 KLATSCPKKPAGRKKFRETRHPIYRGVRQRNSGKWVCELREPNKKTRIWLGTFQTAEMAARAHDVAAIALRGRSA 102          
BLAST of CF504355 vs. ExPASy Swiss-Prot
Match: DRE1A_ARATH (Dehydration-responsive element-binding protein 1A OS=Arabidopsis thaliana GN=DREB1A PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 2.998e-12
Identity = 37/68 (54.41%), Postives = 45/68 (66.18%), Query Frame = 2
Query:  125 EKPAERCDSR------YKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSA 310
            +KPA R   R      Y+GVR+R  GK+V E+R PN + RIWLG++ TAE AARA D A   LRGRSA
Sbjct:   35 KKPAGRKKFRETRHPIYRGVRRRNSGKWVCEVREPNKKTRIWLGTFQTAEMAARAHDVAALALRGRSA 102          
BLAST of CF504355 vs. ExPASy Swiss-Prot
Match: SHN3_ARATH (Ethylene-responsive transcription factor SHINE 3 OS=Arabidopsis thaliana GN=SHN3 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.916e-12
Identity = 30/54 (55.56%), Postives = 43/54 (79.63%), Query Frame = 2
Query:  152 RYKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSAK 313
            +++GVR+R+WG +VSEIR P  + R+WLG++DTAE AARA+D A   + G+SAK
Sbjct:    6 KFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAETAARAYDQAAVLMNGQSAK 59          
BLAST of CF504355 vs. ExPASy Swiss-Prot
Match: RAP26_ARATH (Ethylene-responsive transcription factor RAP2-6 OS=Arabidopsis thaliana GN=RAP2-6 PE=2 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 3.916e-12
Identity = 30/54 (55.56%), Postives = 41/54 (75.93%), Query Frame = 2
Query:  152 RYKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSAK 313
            +Y+GVR+R WGK+ +EIR P+   R+WLG+++TAE AARA+DAA    RG  AK
Sbjct:   60 KYRGVRQRPWGKWAAEIRDPHKATRVWLGTFETAEAAARAYDAAALRFRGSKAK 113          
BLAST of CF504355 vs. ExPASy Swiss-Prot
Match: ERF35_ARATH (Ethylene-responsive transcription factor ERF035 OS=Arabidopsis thaliana GN=ERF035 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.916e-12
Identity = 31/51 (60.78%), Postives = 38/51 (74.51%), Query Frame = 2
Query:  155 YKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRS 307
            Y+GVR R WGK+VSEIR P  ++RIWLG+Y TAE AARA D A   ++G S
Sbjct:   71 YRGVRMRSWGKWVSEIREPRKKSRIWLGTYPTAEMAARAHDVAALAIKGNS 121          
The following BLAST results are available for this feature:
BLAST of CF504355 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
ERF5_NICSY2.296e-1242.11Ethylene-responsive transcription factor 5 OS=Nico... [more]
ERF3_TOBAC2.296e-1257.41Ethylene-responsive transcription factor 3 OS=Nico... [more]
EF102_ARATH2.296e-1254.41Ethylene-responsive transcription factor 5 OS=Arab... [more]
ERF4_TOBAC2.998e-1256.60Ethylene-responsive transcription factor 4 OS=Nico... [more]
ERF4_NICSY2.998e-1256.60Ethylene-responsive transcription factor 4 OS=Nico... [more]
DRE1C_ARATH2.998e-1250.67Dehydration-responsive element-binding protein 1C ... [more]
DRE1A_ARATH2.998e-1254.41Dehydration-responsive element-binding protein 1A ... [more]
SHN3_ARATH3.916e-1255.56Ethylene-responsive transcription factor SHINE 3 O... [more]
RAP26_ARATH3.916e-1255.56Ethylene-responsive transcription factor RAP2-6 OS... [more]
ERF35_ARATH3.916e-1260.78Ethylene-responsive transcription factor ERF035 OS... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-844 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-17_D03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504355 ID=CF504355; Name=CF504355; organism=Citrus sinensis; type=EST; length=316bp
GGAATACAAGAATCATCATCCAAATCACACTCAAAAGTTCCGAGTCAACT
CGATACAGCACCACTCGTCTAAATCAAGAATACCCATAACCTGAAACCCT
TTAAAAATGGTGAAGCACGTAGTCGAAAAGCCTGCTGAGAGATGTGACTC
TCGTTACAAGGGTGTCCGAAAGCGAAAGTGGGGGAAATATGTGTCTGAAA
TCAGACTACCCAACAGCCGTGCCCGTATCTGGCTGGGCTCCTACGACACA
GCAGAAAAAGCAGCGCGTGCTTTCGACGCTGCTTTGTTTTGCTTACGTGG
CCGATCAGCCAAGTTT
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