CF504355

Overview
NameCF504355
Unique NameCF504355
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length316
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504355 vs. ExPASy Swiss-Prot
Match: ERF83_ARATH (Ethylene-responsive transcription factor 7 OS=Arabidopsis thaliana GN=ERF7 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.488e-11
Identity = 30/56 (53.57%), Postives = 42/56 (75.00%), Query Frame = 2
Query:  146 DSRYKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSAK 313
            + RY+GVRKR WG++ +EIR P  ++R+WLG++D+A  AARA+D A   LRG  AK
Sbjct:   24 EPRYRGVRKRPWGRFAAEIRDPLKKSRVWLGTFDSAVDAARAYDTAARNLRGPKAK 79          
BLAST of CF504355 vs. ExPASy Swiss-Prot
Match: DRE2F_ARATH (Dehydration-responsive element-binding protein 2F OS=Arabidopsis thaliana GN=DREB2F PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.488e-11
Identity = 31/53 (58.49%), Postives = 40/53 (75.47%), Query Frame = 2
Query:  152 RYKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSA 310
            +Y+GVR+R WGK+V+EIR P  RAR+WLGS+ TAE+AA A+D A   L G  A
Sbjct:   27 QYRGVRQRTWGKWVAEIREPKKRARLWLGSFATAEEAAMAYDEAALKLYGHDA 79          
BLAST of CF504355 vs. ExPASy Swiss-Prot
Match: WIN1_ARATH (Ethylene-responsive transcription factor WIN1 OS=Arabidopsis thaliana GN=WIN1 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.943e-11
Identity = 29/54 (53.70%), Postives = 43/54 (79.63%), Query Frame = 2
Query:  152 RYKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSAK 313
            +++GVR+R WG +V+EIR P  + RIWLG+++TAE+AARA+D A   + GR+AK
Sbjct:    6 KFRGVRQRHWGSWVAEIRHPLLKRRIWLGTFETAEEAARAYDEAAVLMSGRNAK 59          
BLAST of CF504355 vs. ExPASy Swiss-Prot
Match: SHN2_ARATH (Ethylene-responsive transcription factor SHINE 2 OS=Arabidopsis thaliana GN=SHN2 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.943e-11
Identity = 28/54 (51.85%), Postives = 43/54 (79.63%), Query Frame = 2
Query:  152 RYKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSAK 313
            +++GVR+R+WG +VSEIR P  + R+WLG+++TAE AARA+D A   + G++AK
Sbjct:    6 KFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQAALLMNGQNAK 59          
BLAST of CF504355 vs. ExPASy Swiss-Prot
Match: ESR2_ARATH (Ethylene-responsive transcription factor ESR2 OS=Arabidopsis thaliana GN=ESR2 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.943e-11
Identity = 30/54 (55.56%), Postives = 41/54 (75.93%), Query Frame = 2
Query:  152 RYKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSAK 313
            RY+GVR+R WG+Y +EIR P S+ R WLG++DTAE+AA A+D A   +RG  A+
Sbjct:   57 RYRGVRRRPWGRYAAEIRDPLSKERRWLGTFDTAEEAACAYDCAARAMRGLKAR 110          
BLAST of CF504355 vs. ExPASy Swiss-Prot
Match: ERF98_ARATH (Ethylene-responsive transcription factor ERF098 OS=Arabidopsis thaliana GN=ERF098 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.943e-11
Identity = 31/55 (56.36%), Postives = 44/55 (80.00%), Query Frame = 2
Query:  149 SRYKGVRKRKWGKYVSEIRLPNSR-ARIWLGSYDTAEKAARAFDAALFCLRGRSA 310
            +R++GVR+R WGK+ +EIR P+   AR+WLG+++TAE+AARA+D A F LRG  A
Sbjct:   18 ARFRGVRRRPWGKFAAEIRDPSRNGARLWLGTFETAEEAARAYDRAAFNLRGHLA 72          
BLAST of CF504355 vs. ExPASy Swiss-Prot
Match: ERF43_ARATH (Ethylene-responsive transcription factor ERF043 OS=Arabidopsis thaliana GN=ERF043 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.943e-11
Identity = 32/62 (51.61%), Postives = 40/62 (64.52%), Query Frame = 2
Query:  125 EKPAERCDSRYKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSA 310
            EK        Y+GVR R WGK+VSEIR P  ++RIWLG++ TAE A RA D A   ++G SA
Sbjct:    9 EKKENNKQPVYRGVRMRSWGKWVSEIREPRKKSRIWLGTFPTAEMAMRAHDVAAMSIKGTSA 70          
BLAST of CF504355 vs. ExPASy Swiss-Prot
Match: ERF42_ARATH (Ethylene-responsive transcription factor ERF042 OS=Arabidopsis thaliana GN=ERF042 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.943e-11
Identity = 30/52 (57.69%), Postives = 38/52 (73.08%), Query Frame = 2
Query:  155 YKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSA 310
            Y+G R R WGK+VSEIR P  ++RIWLG++ TAE AARA D A   ++G SA
Sbjct:   26 YRGARMRSWGKWVSEIREPRKKSRIWLGTFPTAEMAARAHDVAALSIKGSSA 77          
BLAST of CF504355 vs. ExPASy Swiss-Prot
Match: DRE1D_ARATH (Dehydration-responsive element-binding protein 1D OS=Arabidopsis thaliana GN=DREB1D PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.943e-11
Identity = 31/52 (59.62%), Postives = 39/52 (75.00%), Query Frame = 2
Query:  155 YKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSA 310
            Y+GVR+R  GK+V E+R PN ++RIWLG++ T E AARA D A   LRGRSA
Sbjct:   54 YRGVRQRNSGKWVCEVREPNKKSRIWLGTFPTVEMAARAHDVAALALRGRSA 105          
BLAST of CF504355 vs. ExPASy Swiss-Prot
Match: ERF36_ARATH (Ethylene-responsive transcription factor ERF036 OS=Arabidopsis thaliana GN=ERF036 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.538e-11
Identity = 30/52 (57.69%), Postives = 38/52 (73.08%), Query Frame = 2
Query:  155 YKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSA 310
            Y+GVR R WGK+VSEIR P  + RIWLG++ TA+ AARA D A   ++G SA
Sbjct:   79 YRGVRMRSWGKWVSEIRQPRKKTRIWLGTFVTADMAARAHDVAALTIKGSSA 130          
The following BLAST results are available for this feature:
BLAST of CF504355 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
ERF83_ARATH1.488e-1153.57Ethylene-responsive transcription factor 7 OS=Arab... [more]
DRE2F_ARATH1.488e-1158.49Dehydration-responsive element-binding protein 2F ... [more]
WIN1_ARATH1.943e-1153.70Ethylene-responsive transcription factor WIN1 OS=A... [more]
SHN2_ARATH1.943e-1151.85Ethylene-responsive transcription factor SHINE 2 O... [more]
ESR2_ARATH1.943e-1155.56Ethylene-responsive transcription factor ESR2 OS=A... [more]
ERF98_ARATH1.943e-1156.36Ethylene-responsive transcription factor ERF098 OS... [more]
ERF43_ARATH1.943e-1151.61Ethylene-responsive transcription factor ERF043 OS... [more]
ERF42_ARATH1.943e-1157.69Ethylene-responsive transcription factor ERF042 OS... [more]
DRE1D_ARATH1.943e-1159.62Dehydration-responsive element-binding protein 1D ... [more]
ERF36_ARATH2.538e-1157.69Ethylene-responsive transcription factor ERF036 OS... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-844 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-17_D03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504355 ID=CF504355; Name=CF504355; organism=Citrus sinensis; type=EST; length=316bp
GGAATACAAGAATCATCATCCAAATCACACTCAAAAGTTCCGAGTCAACT
CGATACAGCACCACTCGTCTAAATCAAGAATACCCATAACCTGAAACCCT
TTAAAAATGGTGAAGCACGTAGTCGAAAAGCCTGCTGAGAGATGTGACTC
TCGTTACAAGGGTGTCCGAAAGCGAAAGTGGGGGAAATATGTGTCTGAAA
TCAGACTACCCAACAGCCGTGCCCGTATCTGGCTGGGCTCCTACGACACA
GCAGAAAAAGCAGCGCGTGCTTTCGACGCTGCTTTGTTTTGCTTACGTGG
CCGATCAGCCAAGTTT
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