CF504355

Overview
NameCF504355
Unique NameCF504355
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length316
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF504355 vs. ExPASy Swiss-Prot
Match: DRE2D_ARATH (Dehydration-responsive element-binding protein 2D OS=Arabidopsis thaliana GN=DREB2D PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.645e-11
Identity = 30/52 (57.69%), Postives = 40/52 (76.92%), Query Frame = 2 
Query:  155 YKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSA 310
            YKGVR+R WGK+V+EIR PN  AR+WLG++DT+ +AA A+D+A   L G  A
Sbjct:   42 YKGVRQRTWGKWVAEIREPNRGARLWLGTFDTSREAALAYDSAARKLYGPEA 93
[Close]
BLAST of CF504355 vs. ExPASy Swiss-Prot
Match: CRF5_ARATH (Ethylene-responsive transcription factor CRF5 OS=Arabidopsis thaliana GN=CRF5 PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.645e-11
Identity = 27/54 (50.00%), Postives = 42/54 (77.78%), Query Frame = 2 
Query:  152 RYKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSAK 313
            +Y+GVR+R WGK+ +EIR P+SR R+WLG++ TAE+AA  +D A   ++G +A+
Sbjct:   98 KYRGVRQRPWGKFAAEIRDPSSRTRLWLGTFATAEEAAIGYDRAAIRIKGHNAQ 151
The following BLAST results are available for this feature:
BLAST of CF504355 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
DRE2D_ARATH9.645e-1157.69Dehydration-responsive element-binding protein 2D ... [more]
CRF5_ARATH9.645e-1150.00Ethylene-responsive transcription factor CRF5 OS=A... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-844 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-17_D03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504355 ID=CF504355; Name=CF504355; organism=Citrus sinensis; type=EST; length=316bp
GGAATACAAGAATCATCATCCAAATCACACTCAAAAGTTCCGAGTCAACT
CGATACAGCACCACTCGTCTAAATCAAGAATACCCATAACCTGAAACCCT
TTAAAAATGGTGAAGCACGTAGTCGAAAAGCCTGCTGAGAGATGTGACTC
TCGTTACAAGGGTGTCCGAAAGCGAAAGTGGGGGAAATATGTGTCTGAAA
TCAGACTACCCAACAGCCGTGCCCGTATCTGGCTGGGCTCCTACGACACA
GCAGAAAAAGCAGCGCGTGCTTTCGACGCTGCTTTGTTTTGCTTACGTGG
CCGATCAGCCAAGTTT
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