CF504357

Overview
NameCF504357
Unique NameCF504357
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length380
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CF504357 vs. ExPASy Swiss-Prot
Match: PUB15_ARATH (U-box domain-containing protein 15 OS=Arabidopsis thaliana GN=PUB15 PE=2 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 1.926e-14
Identity = 41/100 (41.00%), Postives = 63/100 (63.00%), Query Frame = 3 
Query:   81 DLIRQLVADLESCSINDQKQAAMEIRLLAKNKSENRLKIAKAGAVKPLVSLISSSDPQVQEYGVTAILNLSLCDENKQLIASSGAIKPLVRSLKTGTSTA 380
            D +  LV  L S  + +Q+++  ++RLLA+   ENR+ IA AGA+  LV L+S  D  +QE  VT +LNLS+ + NK+LI++ GAI  ++  L+ G   A
Sbjct:  379 DEVSLLVEALSSSQLEEQRRSVKQMRLLARENPENRVLIANAGAIPLLVQLLSYPDSGIQENAVTTLLNLSIDEVNKKLISNEGAIPNIIEILENGNREA 478
The following BLAST results are available for this feature:
BLAST of CF504357 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
PUB15_ARATH1.926e-1441.00U-box domain-containing protein 15 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-846 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-17_D05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504357 ID=CF504357; Name=CF504357; organism=Citrus sinensis; type=EST; length=380bp
GCGACAGATCCGGTGAATTTCCGACGGCGTCGTCCGAGAGCCGGAGACTT
TTAATGGCGTGTGTTTCGGAGAACTCCGATGATCTGATTCGCCAGCTCGT
TGCAGATCTTGAGTCCTGTTCGATTAACGATCAAAAACAAGCCGCCATGG
AAATCAGACTTTTGGCCAAGAACAAGTCAGAGAATCGCTTAAAAATCGCC
AAAGCAGGTGCTGTTAAGCCGTTAGTTTCGTTAATCTCATCGTCTGATCC
TCAGGTTCAAGAGTACGGAGTTACAGCTATTTTGAATCTGTCTCTGTGCG
ACGAGAACAAGCAATTGATAGCTTCATCAGGAGCGATAAAGCCGCTCGTT
AGATCATTAAAAACAGGTACATCAACGGCT
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