CF504361

Overview
NameCF504361
Unique NameCF504361
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length424
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1260 contig Csv1_Contig1260:429..852. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504361 vs. ExPASy Swiss-Prot
Match: CB48_MAIZE (Chlorophyll a-b binding protein 48, chloroplastic OS=Zea mays GN=CAB48 PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 5.094e-36
Identity = 80/129 (62.02%), Postives = 87/129 (67.44%), Query Frame = 3
Query:   48 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTV-KSAPQ---SIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFG 422
            AT AI   A  G+ A    + F         GRITMR+T  K  P    S WYG DR  YLGP S   PSYLTGEFPGDYGWDT GLSADPETFAKNRELEVIH RWA+   LGCVFPE+L++NGVKFG
Sbjct:    4 ATMAITSRALVGKPAAGTRDVFGE-------GRITMRKTAAKPKPARSGSPWYGADRVLYLGPLSGSPPSYLTGEFPGDYGWDTEGLSADPETFAKNRELEVIHCRWAIAVGLGCVFPELLARNGVKFG 125          
BLAST of CF504361 vs. ExPASy Swiss-Prot
Match: CB22_SOYBN (Chlorophyll a-b binding protein 2, chloroplastic OS=Glycine max GN=CAB2 PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 4.037e-33
Identity = 77/130 (59.23%), Postives = 93/130 (71.54%), Query Frame = 3
Query:   48 ATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSI-----WYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFG 422
            +T A+  S+ AGQ      +    ++GV   GR++MR+T   AP+++     WYGPDR KYLGPFS + PSYLTGEF G        LSADPETFAKNRELEVIHSRWAMLGALGCVFPE+L++NGVKFG
Sbjct:    4 STMALSSSSLAGQAMKLAPS--TPELGV---GRVSMRKT---APKTVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFHG--------LSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG 117          
BLAST of CF504361 vs. ExPASy Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 3.417e-32
Identity = 69/98 (70.41%), Postives = 76/98 (77.55%), Query Frame = 3
Query:  132 ADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK-NGVKFG 422
            A G + T     KSA    WYGPDR K+LGPFS  TP+YLTGEFPGDYGWDTAGLSADPETF K RELEVIH+RWA+LGALG + PE+LS   GVKFG
Sbjct:   21 AAGTKQTKAAPAKSAGIE-WYGPDRAKWLGPFSTNTPAYLTGEFPGDYGWDTAGLSADPETFKKYRELEVIHARWALLGALGILTPELLSTYAGVKFG 117          
BLAST of CF504361 vs. ExPASy Swiss-Prot
Match: CB22_CUCSA (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 1.299e-31
Identity = 61/67 (91.04%), Postives = 64/67 (95.52%), Query Frame = 3
Query:  222 PFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFG 422
            PFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHS WAMLGALGCVFPE+LS+NGVKFG
Sbjct:    1 PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSTWAMLGALGCVFPELLSRNGVKFG 67          
BLAST of CF504361 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 2.215e-31
Identity = 63/88 (71.59%), Postives = 76/88 (86.36%), Query Frame = 3
Query:  171 SAPQSI---WYGPDRPKYLGPFSEQ-TPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFG 422
            +AP+S    +YGP+R K+LGP+SE  TP+YLTGEFPGDYGWDTAGLSADPETF + RELE+IH+RWAMLGALGC  PE+L+K+G KFG
Sbjct:   27 AAPKSSGVEFYGPNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCQTPELLAKSGTKFG 114          
BLAST of CF504361 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 1.587e-29
Identity = 62/97 (63.92%), Postives = 80/97 (82.47%), Query Frame = 3
Query:  144 RITMRRTVKSAPQSI--WYGPDRPKYLGPFSEQ-TPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK-NGVKFG 422
            R T ++ + + P++   +YGPDR K+LGPFSE  TP YLTGEFPGDYGWDTAGLSADP+TFA+ RE+E+IH+RWA+LGALG + PE+LS+  GV+FG
Sbjct:   16 RQTRQQRMATVPRAAVEFYGPDRAKFLGPFSENDTPEYLTGEFPGDYGWDTAGLSADPQTFARYREIELIHARWALLGALGILTPELLSQYAGVQFG 112          
BLAST of CF504361 vs. ExPASy Swiss-Prot
Match: CB2_MALDO (Chlorophyll a-b binding protein AB10, chloroplastic OS=Malus domestica PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 3.910e-28
Identity = 59/73 (80.82%), Postives = 62/73 (84.93%), Query Frame = 3
Query:  204 RPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFG 422
            R KYLGPFS + PSYLTGEFPGDYGWDTAGLSA PETFAKNRELEVIHSR AM  ALGC+FPE+LS  G  FG
Sbjct:   58 RVKYLGPFSGEWPSYLTGEFPGDYGWDTAGLSAYPETFAKNRELEVIHSRCAMSAALGCIFPELLSVMGQGFG 130          
BLAST of CF504361 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.685e-20
Identity = 49/85 (57.65%), Postives = 61/85 (71.76%), Query Frame = 3
Query:  171 SAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILS-KNGVKFG 422
            S+  + +YGPD          Q P   TGEFPGDYGWDTAGLSADPETF + RELE+IH+R  +LGALG V PE+L+ ++G+KFG
Sbjct:   51 SSSANQFYGPDATSGWD-LQHQHPRLPTGEFPGDYGWDTAGLSADPETFKRYRELELIHARCGLLGALGMVTPELLADEDGIKFG 134          
BLAST of CF504361 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.013e-16
Identity = 41/81 (50.62%), Postives = 49/81 (60.49%), Query Frame = 3
Query:  189 WYGPDRPKYLGPF---SEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFG 422
            WYGPDR  +L        + P YL GE  GDYG+D  GL   PE FAK +  E+IH+RWAMLGA G + PE L+K G   G
Sbjct:   62 WYGPDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWAMLGAAGFIIPEALNKYGANCG 142          
BLAST of CF504361 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.481e-14
Identity = 46/116 (39.66%), Postives = 64/116 (55.17%), Query Frame = 3
Query:   66 QSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSAPQSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGV 413
            +++F G   LR S +F+  VG          R+V  A  ++   PDRP +        P +L G  PGD+G+D  GL +DPE+   N + E++HSRWAMLGA G   PE L+K GV
Sbjct:   31 KASFLGGKRLRVS-KFIAPVG---------SRSV--AVSAVAADPDRPLWFP--GSTPPEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGV 132          
The following BLAST results are available for this feature:
BLAST of CF504361 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
CB48_MAIZE5.094e-3662.02Chlorophyll a-b binding protein 48, chloroplastic ... [more]
CB22_SOYBN4.037e-3359.23Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB2_CHLMO3.417e-3270.41Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB22_CUCSA1.299e-3191.04Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB2_CHLRE2.215e-3171.59Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_DUNTE1.587e-2963.92Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_MALDO3.910e-2880.82Chlorophyll a-b binding protein AB10, chloroplasti... [more]
CB2_DUNSA6.685e-2057.65Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB26_ARATH2.013e-1650.62Chlorophyll a-b binding protein CP26, chloroplasti... [more]
CB12_PETHY5.481e-1439.66Chlorophyll a-b binding protein, chloroplastic OS=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-850 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-17_D10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504361 ID=CF504361; Name=CF504361; organism=Citrus sinensis; type=EST; length=424bp
AAGAAGCTTCAGCAACAAAAGGAAAAGCTTTCGCATAAGAACATATGGCA
ACCTCTGCTATCCAACAATCAGCATTTGCTGGCCAGACCGCCTTGAGGCA
ATCCAATGAGTTTGTCCGCAAGGTTGGAGTTGCTGACGGTGGCCGTATCA
CCATGAGGAGGACTGTCAAATCCGCTCCCCAGAGCATCTGGTACGGCCCA
GACCGCCCAAAGTACTTGGGACCATTCTCTGAGCAAACACCATCATACTT
GACTGGTGAGTTCCCTGGTGACTATGGCTGGGATACCGCTGGTTTATCAG
CAGACCCCGAGACATTTGCTAAGAACCGTGAGCTAGAGGTGATCCACAGC
AGATGGGCAATGCTTGGAGCTCTTGGCTGCGTCTTCCCTGAAATCCTCTC
CAAGAATGGAGTGAAGTTCGGCGA
back to top