CF504364

Overview
NameCF504364
Unique NameCF504364
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length372
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig777 contig Csv1_Contig777:1..369. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504364 vs. ExPASy Swiss-Prot
Match: GSTX3_SOYBN (Glutathione S-transferase 3 OS=Glycine max GN=GST3 PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.816e-25
Identity = 50/81 (61.73%), Postives = 64/81 (79.01%), Query Frame = 2
Query:  110 KSVEYEFLEENLGSKSELLLKSNPVHKKIPVLIHNDKPVCESLIIVEYVDEAWSSSGPSILPSDPYDRAVARFWAAYVDEK 352
            K V YE+ EENL ++S LLL+ NP+HKKIPVLIHN KP+CES IIV+Y+DE W+   P ++PSDPY R+ ARFW  Y+D+K
Sbjct:   26 KGVRYEYKEENLMNRSPLLLQMNPIHKKIPVLIHNGKPICESAIIVQYIDEVWNDKSP-LMPSDPYKRSQARFWVDYIDKK 105          
BLAST of CF504364 vs. ExPASy Swiss-Prot
Match: GSTXA_ARATH (Glutathione S-transferase 103-1A OS=Arabidopsis thaliana GN=103-1A PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 2.714e-21
Identity = 47/87 (54.02%), Postives = 64/87 (73.56%), Query Frame = 2
Query:   92 ESHLKIKSVEYEFLEENLGSKSELLLKSNPVHKKIPVLIHNDKPVCESLIIVEYVDEAWSSSGPSILPSDPYDRAVARFWAAYVDEK 352
            E  LK+K + YE++EE L +KS LLL  NP+HKK+PVL+HN K + ES +I+EY+DE W  +   ILP DPY+R+ ARF+A  VDE+
Sbjct:   22 EMALKLKGIPYEYVEEILENKSPLLLALNPIHKKVPVLVHNGKTILESHVILEYIDETWPQN--PILPQDPYERSKARFFAKLVDEQ 106          
BLAST of CF504364 vs. ExPASy Swiss-Prot
Match: GSTU1_ORYSJ (Probable glutathione S-transferase GSTU1 OS=Oryza sativa subsp. japonica GN=GSTU1 PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 8.731e-20
Identity = 47/90 (52.22%), Postives = 66/90 (73.33%), Query Frame = 2
Query:  110 KSVEYEFLEENLGSKSELLLKSNPVHKKIPVLIHNDKPVCESLIIVEYVDEAWSSSGPSILP-------SDPYDRAVARFWAAYVDEKWF 358
            K +E+E+ EE+LG+KS+LLL+SNPVH+KIPVL+H  +PV ESL+I++Y+D+A+  + P +LP          Y RA ARFWA YVD K +
Sbjct:   28 KGLEFEYREEDLGNKSDLLLRSNPVHRKIPVLLHAGRPVSESLVILQYLDDAFPGT-PHLLPPANSGDADAAYARATARFWADYVDRKLY 116          
BLAST of CF504364 vs. ExPASy Swiss-Prot
Match: GSTU1_ORYSI (Probable glutathione S-transferase GSTU1 OS=Oryza sativa subsp. indica GN=GSTU1 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.140e-19
Identity = 45/89 (50.56%), Postives = 66/89 (74.16%), Query Frame = 2
Query:  110 KSVEYEFLEENLGSKSELLLKSNPVHKKIPVLIHNDKPVCESLIIVEYVDEAWSSSGPSILPSD------PYDRAVARFWAAYVDEKWF 358
            K +E+E+ EE+LG+KS+LLL+SNPVH+KIPVL+H  +PV ESL+I++Y+D+A+  +   + P++       Y RA ARFWA YVD K +
Sbjct:   28 KGLEFEYREEDLGNKSDLLLRSNPVHRKIPVLLHAGRPVSESLVILQYLDDAFPGTPHLLSPANSGDADAAYARATARFWADYVDRKLY 116          
BLAST of CF504364 vs. ExPASy Swiss-Prot
Match: GSTX2_MAIZE (Probable glutathione S-transferase BZ2 OS=Zea mays GN=BZ2 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.959e-17
Identity = 44/96 (45.83%), Postives = 67/96 (69.79%), Query Frame = 2
Query:  101 LKIKSVEYEFLEENLG-SKSELLLKSNPVHKKIPVLIHND-KPVCESLIIVEYVDEAWSSSGPS-----ILPSDPYDRAVARFWAAYVDEKWFSAL 367
            L ++ V YE L+E LG  KS+ LL +NPV+ KIPVL+  D + +CES +IV+Y+++    SG +     +LP DPY+RA+ RFW A++D+K++ AL
Sbjct:   19 LDLRGVAYELLDEPLGPKKSDRLLAANPVYGKIPVLLLPDGRAICESAVIVQYIEDVARESGGAEAGSLLLPDDPYERAMHRFWTAFIDDKFWPAL 114          

HSP 2 Score: 21.9422 bits (45), Expect = 1.959e-17
Identity = 10/16 (62.50%), Postives = 11/16 (68.75%), Query Frame = 1
Query:   52 VLGFSPSPFVMRARIA 99
            VLG   SPF  RAR+A
Sbjct:    3 VLGGEVSPFTARARLA 18          
The following BLAST results are available for this feature:
BLAST of CF504364 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
GSTX3_SOYBN1.816e-2561.73Glutathione S-transferase 3 OS=Glycine max GN=GST3... [more]
GSTXA_ARATH2.714e-2154.02Glutathione S-transferase 103-1A OS=Arabidopsis th... [more]
GSTU1_ORYSJ8.731e-2052.22Probable glutathione S-transferase GSTU1 OS=Oryza ... [more]
GSTU1_ORYSI1.140e-1950.56Probable glutathione S-transferase GSTU1 OS=Oryza ... [more]
GSTX2_MAIZE1.959e-1745.83Probable glutathione S-transferase BZ2 OS=Zea mays... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-853 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-17_E01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504364 ID=CF504364; Name=CF504364; organism=Citrus sinensis; type=EST; length=372bp
GAGCAGAGCTTAGAGAGAAAAAAAAAGAAAATGGCAAAAAGTGACGTGAA
GGTTTTGGGTTTTTCGCCAAGCCCATTTGTGATGAGGGCAAGAATCGCAC
CTTAAGATCAAGTCTGTGGAGTATGAGTTTCTGGAGGAGAATTTGGGATC
CAAAAGCGAGCTTCTGCTTAAATCAAACCCTGTTCACAAGAAAATCCCAG
TTCTGATTCACAATGATAAGCCTGTTTGCGAATCTCTCATTATTGTCGAG
TACGTGGATGAGGCTTGGTCCTCTTCAGGTCCCTCTATTCTTCCTTCTGA
TCCTTATGACCGTGCGGTTGCTCGTTTCTGGGCCGCTTACGTTGATGAGA
AGTGGTTCTCTGCCTTGAGAGA
back to top