CF504375

Overview
NameCF504375
Unique NameCF504375
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length324
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504375 vs. ExPASy Swiss-Prot
Match: DQX1_BOVIN (ATP-dependent RNA helicase DQX1 OS=Bos taurus GN=DQX1 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.670e-15
Identity = 44/98 (44.90%), Postives = 60/98 (61.22%), Query Frame = 2
Query:    2 NLVHTTLTMKAMGINNLLSFDFVDPPSPQALISAMEQLYSLGALDEEGLLTKLGKKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGHIFTRP 295
            NL    L +K   I       F+D P+P+AL+ A+E L  L ALD++G L+ LG  ++EFPL P L+K LLAS +  C DE+LT+ AM+     FTRP
Sbjct:  411 NLSSLMLLLKRRQIAEPGKCHFLDRPAPEALMQALEDLDYLAALDDDGDLSDLGVILSEFPLAPELAKALLASCEFDCVDEMLTLAAMLTAAPGFTRP 508          
BLAST of CF504375 vs. ExPASy Swiss-Prot
Match: HRPA_HAEIN (ATP-dependent RNA helicase hrpA homolog OS=Haemophilus influenzae GN=hrpA PE=3 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 1.132e-14
Identity = 40/114 (35.09%), Postives = 71/114 (62.28%), Query Frame = 2
Query:    2 NLVHTTLTMKAMGINNLLSFDFVDPPSPQALISAMEQLYSLGALD-------EEGLLTKLGKKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGHIFTRPREKQAKADE 322
            NL    L M A+G++++ +F FVD P  + +   ++ L  LGA +       E+ LLT++G+++A+ P+DP L+KM+L++V+ GC  E++ I++ +       RP+EKQ  +DE
Sbjct:  436 NLASVILQMTALGLDDIEAFPFVDAPDERHIQDGVKLLEELGAFETVQTKSGEKRLLTRVGRQLAQLPVDPRLAKMILSAVNFGCVYEMMIIVSALSIQDPRERPQEKQQASDE 549          
BLAST of CF504375 vs. ExPASy Swiss-Prot
Match: DQX1_MOUSE (ATP-dependent RNA helicase DQX1 OS=Mus musculus GN=Dqx1 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.303e-14
Identity = 38/77 (49.35%), Postives = 54/77 (70.13%), Query Frame = 2
Query:   65 FVDPPSPQALISAMEQLYSLGALDEEGLLTKLGKKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGHIFTRP 295
            F+D P+P+AL+ A+E L  L AL+++G L+ LG  ++EFPL P L+K LLAS +  C DE+LT+ AM+     FTRP
Sbjct:  430 FLDRPAPEALMRALEDLDYLAALNDDGELSDLGVILSEFPLPPELAKALLASCEFNCVDEMLTLAAMLTAAPGFTRP 506          
BLAST of CF504375 vs. ExPASy Swiss-Prot
Match: DHR1_YEAST (Probable ATP-dependent RNA helicase DHR1 OS=Saccharomyces cerevisiae GN=ECM16 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.586e-14
Identity = 39/89 (43.82%), Postives = 56/89 (62.92%), Query Frame = 2
Query:   20 LTMKAMGINNLLSFDFVDPPSPQALISAMEQLYSLGALDEEGLLTKLGKKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGHIF 286
            L MK+M I+N+++F F  PP   AL  A++ L  LGALD + ++T+ GKKM+ FPL P  SKMLL S +  C   I+ I++ +  G  F
Sbjct:  852 LQMKSMAIHNIINFPFPTPPDRVALSKAIQLLQYLGALDNKEMITEDGKKMSLFPLSPRFSKMLLVSDEKACLPYIVAIVSALSVGDPF 940          
BLAST of CF504375 vs. ExPASy Swiss-Prot
Match: DHR2_YEAST (Probable ATP-dependent RNA helicase DHR2 OS=Saccharomyces cerevisiae GN=DHR2 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.789e-13
Identity = 30/96 (31.25%), Postives = 62/96 (64.58%), Query Frame = 2
Query:   20 LTMKAMGINNLLSFDFVDPPSPQALISAMEQLYSLGALDEEGLLTKLGKKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGHIFTRPREKQ 307
            L +K  G+++LL++ + + P  +A++  +++LY LGALD  G +TK G++MA  PL P LS +L+ + ++GC  +++ I++ +   ++   P  ++
Sbjct:  450 LMLKRYGVDDLLNWTWFENPGKEAIVMGLQELYELGALDTRGKITKRGQQMALLPLQPHLSSVLIKASEVGCLSQVIDIVSCLSVENLLLNPSPEE 545          
BLAST of CF504375 vs. ExPASy Swiss-Prot
Match: PRP2_YEAST (Pre-mRNA-splicing factor ATP-dependent RNA helicase-like protein PRP2 OS=Saccharomyces cerevisiae GN=PRP2 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 8.115e-13
Identity = 36/93 (38.71%), Postives = 58/93 (62.37%), Query Frame = 2
Query:    2 NLVHTTLTMKAMGINNLLSFDFVDPPSPQALISAMEQLYSLGALDEEGLLTKLGKKMAEFPLDPPLSKMLLASVD----LGCSDEILTIIAMI 268
            NL +T L + ++G+ +L+ F  +D PS   L  ++E LY LGAL+ +G +T+LGK M EFP +P  +K+L  +       G  +E LTI++M+
Sbjct:  586 NLSNTVLLLLSLGVTDLIKFPLMDKPSIPTLRKSLENLYILGALNSKGTITRLGKMMCEFPCEPEFAKVLYTAATHEQCQGVLEECLTIVSML 678          
BLAST of CF504375 vs. ExPASy Swiss-Prot
Match: YK16_SCHPO (Putative ATP-dependent RNA helicase PB1A10.06c OS=Schizosaccharomyces pombe GN=SPAPB1A10.06c PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.384e-12
Identity = 34/89 (38.20%), Postives = 54/89 (60.67%), Query Frame = 2
Query:   20 LTMKAMGINNLLSFDFVDPPSPQALISAMEQLYSLGALDEEGLLTKLGKKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGHIF 286
            L MK M I+N+ +F F   P    L  +++ L +LGA+D EG+LTKLG++M+ FPL P  SKML+     GC   ++ +++ +    +F
Sbjct:  825 LQMKNMNIDNIANFPFPTSPGRSRLEKSLKLLSNLGAIDSEGVLTKLGEQMSLFPLSPRFSKMLIIGQQHGCLPYVIALVSALSINQLF 913          
BLAST of CF504375 vs. ExPASy Swiss-Prot
Match: YK99_SCHPO (Putative pre-mRNA-splicing factor ATP-dependent RNA helicase C20H4.09 OS=Schizosaccharomyces pombe GN=SPAC20H4.09 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.361e-12
Identity = 39/93 (41.94%), Postives = 56/93 (60.22%), Query Frame = 2
Query:   20 LTMKAMGINNLLSFDFVDPPSPQALISAMEQLYSLGALDEEGLLT-KLGKKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGHIFTRP 295
            L +K +G+ N+L F F   P    L++A+E LY LG LDE G LT  LG +++   LD  +SK LL S   GC+ EIL+I +++  G +F  P
Sbjct:  392 LFLKGLGLKNILQFPFFVRPPTVHLMAALEDLYLLGVLDESGNLTDPLGIQISNSFLDANISKALLTSNQFGCTHEILSIASILTAGEVFYNP 484          
The following BLAST results are available for this feature:
BLAST of CF504375 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
DQX1_BOVIN8.670e-1544.90ATP-dependent RNA helicase DQX1 OS=Bos taurus GN=D... [more]
HRPA_HAEIN1.132e-1435.09ATP-dependent RNA helicase hrpA homolog OS=Haemoph... [more]
DQX1_MOUSE4.303e-1449.35ATP-dependent RNA helicase DQX1 OS=Mus musculus GN... [more]
DHR1_YEAST9.586e-1443.82Probable ATP-dependent RNA helicase DHR1 OS=Saccha... [more]
DHR2_YEAST2.789e-1331.25Probable ATP-dependent RNA helicase DHR2 OS=Saccha... [more]
PRP2_YEAST8.115e-1338.71Pre-mRNA-splicing factor ATP-dependent RNA helicas... [more]
YK16_SCHPO1.384e-1238.20Putative ATP-dependent RNA helicase PB1A10.06c OS=... [more]
YK99_SCHPO2.361e-1241.94Putative pre-mRNA-splicing factor ATP-dependent RN... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-864 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-17_F03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504375 ID=CF504375; Name=CF504375; organism=Citrus sinensis; type=EST; length=324bp
TAATCTTGTACATACTACCCTCACTATGAAGGCTATGGGAATCAATAATC
TGCTGTCTTTTGATTTTGTGGATCCTCCATCTCCCCAAGCTCTTATTTCT
GCCATGGAGCAATTATACAGTCTTGGAGCTCTGGATGAGGAGGGACTTCT
GACTAAATTAGGTAAGAAAATGGCAGAATTTCCCCTAGATCCGCCATTAT
CAAAGATGCTGCTAGCAAGTGTAGACCTTGGTTGCAGTGATGAGATATTA
ACGATCATCGCCATGATTCAAACTGGCCATATCTTCACCAGACCCAGGGA
AAAACAGGCTAAAGCAGATGAAAA
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