CF504382

Overview
NameCF504382
Unique NameCF504382
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length509
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504382 vs. ExPASy Swiss-Prot
Match: STX1A_RAT (Syntaxin-1A OS=Rattus norvegicus GN=Stx1a PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 5.072e-12
Identity = 39/141 (27.66%), Postives = 71/141 (50.35%), Query Frame = 3
Query:   27 LRKKLKDSMESFNELRQRISSEYRDTVQRRYYTVTGENPDEKTLDRLISTGESETFLQKAIQEQGRGRILDTINEIQERHDAVKVLEKNLQELHQVFLDMAVLVQAQGEQLDDIESQVQRANSYVRGGTERLQTAREVSAK 449
            L +K  + M  +N  +       +  +QR+   +TG     + L+ ++ +G    F    I +    +    ++EI+ RH  +  LE +++ELH +F+DMA+LV++QGE +D IE  V+ A  YV       + A +  +K
Sbjct:  123 LSRKFVEVMSEYNATQSDYRERCKGRIQRQL-EITGRTTTSEELEDMLESGNPAIFASGIIMDSSISK--QALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSK 260          
BLAST of CF504382 vs. ExPASy Swiss-Prot
Match: STX1A_PONAB (Syntaxin-1A OS=Pongo abelii GN=STX1A PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 5.072e-12
Identity = 39/141 (27.66%), Postives = 71/141 (50.35%), Query Frame = 3
Query:   27 LRKKLKDSMESFNELRQRISSEYRDTVQRRYYTVTGENPDEKTLDRLISTGESETFLQKAIQEQGRGRILDTINEIQERHDAVKVLEKNLQELHQVFLDMAVLVQAQGEQLDDIESQVQRANSYVRGGTERLQTAREVSAK 449
            L +K  + M  +N  +       +  +QR+   +TG     + L+ ++ +G    F    I +    +    ++EI+ RH  +  LE +++ELH +F+DMA+LV++QGE +D IE  V+ A  YV       + A +  +K
Sbjct:  123 LSRKFVEVMSEYNATQSDYRERCKGRIQRQL-EITGRTTTSEELEDMLESGNPAIFASGIIMDSSISK--QALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSK 260          
BLAST of CF504382 vs. ExPASy Swiss-Prot
Match: STX1A_HUMAN (Syntaxin-1A OS=Homo sapiens GN=STX1A PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 5.072e-12
Identity = 39/141 (27.66%), Postives = 71/141 (50.35%), Query Frame = 3
Query:   27 LRKKLKDSMESFNELRQRISSEYRDTVQRRYYTVTGENPDEKTLDRLISTGESETFLQKAIQEQGRGRILDTINEIQERHDAVKVLEKNLQELHQVFLDMAVLVQAQGEQLDDIESQVQRANSYVRGGTERLQTAREVSAK 449
            L +K  + M  +N  +       +  +QR+   +TG     + L+ ++ +G    F    I +    +    ++EI+ RH  +  LE +++ELH +F+DMA+LV++QGE +D IE  V+ A  YV       + A +  +K
Sbjct:  123 LSRKFVEVMSEYNATQSDYRERCKGRIQRQL-EITGRTTTSEELEDMLESGNPAIFASGIIMDSSISK--QALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSK 260          
BLAST of CF504382 vs. ExPASy Swiss-Prot
Match: STX1A_CAEEL (Syntaxin-1A homolog OS=Caenorhabditis elegans GN=unc-64 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 5.072e-12
Identity = 36/125 (28.80%), Postives = 71/125 (56.80%), Query Frame = 3
Query:   27 LRKKLKDSMESFNELRQRISSEYRDTVQRRYYTVTGENPDEKTLDRLISTGESETFLQKAIQEQGRGRILDTINEIQERHDAVKVLEKNLQELHQVFLDMAVLVQAQGEQLDDIESQVQRANSYV 401
            L ++  + M  +N+ +       +  +QR+   + G+   ++ L+ +I +G    F Q  I +  + +   T+ +I+ RH+ +  LE +++ELH +F+DMA+LV++QGE +D IE  V+ A  +V
Sbjct:  124 LSRRFVEVMTDYNKTQTDYRERCKGRIQRQL-DIAGKQVGDEDLEEMIESGNPGVFTQGIITDTQQAK--QTLADIEARHNDIMKLESSIRELHDMFMDMAMLVESQGEMVDRIEYNVEHAKEFV 245          
BLAST of CF504382 vs. ExPASy Swiss-Prot
Match: STX1A_CAEBR (Syntaxin-1A OS=Caenorhabditis briggsae GN=unc-64 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 5.072e-12
Identity = 36/125 (28.80%), Postives = 71/125 (56.80%), Query Frame = 3
Query:   27 LRKKLKDSMESFNELRQRISSEYRDTVQRRYYTVTGENPDEKTLDRLISTGESETFLQKAIQEQGRGRILDTINEIQERHDAVKVLEKNLQELHQVFLDMAVLVQAQGEQLDDIESQVQRANSYV 401
            L ++  + M  +N+ +       +  +QR+   + G+   ++ L+ +I +G    F Q  I +  + +   T+ +I+ RH+ +  LE +++ELH +F+DMA+LV++QGE +D IE  V+ A  +V
Sbjct:  126 LSRRFVEVMTDYNKTQTDYRERCKGRIQRQL-DIAGKQVGDEDLEEMIESGNPGVFTQGIITDTQQAK--QTLADIEARHNDIMKLESSIRELHDMFMDMAMLVESQGEMVDRIEYNVEHAKEFV 247          
BLAST of CF504382 vs. ExPASy Swiss-Prot
Match: STX1A_MOUSE (Syntaxin-1A OS=Mus musculus GN=Stx1a PE=1 SV=3)

HSP 1 Score: 70.0922 bits (170), Expect = 6.625e-12
Identity = 39/141 (27.66%), Postives = 71/141 (50.35%), Query Frame = 3
Query:   27 LRKKLKDSMESFNELRQRISSEYRDTVQRRYYTVTGENPDEKTLDRLISTGESETFLQKAIQEQGRGRILDTINEIQERHDAVKVLEKNLQELHQVFLDMAVLVQAQGEQLDDIESQVQRANSYVRGGTERLQTAREVSAK 449
            L +K  + M  +N  +       +  +QR+   +TG     + L+ ++ +G    F    I +    +    ++EI+ RH  +  LE +++ELH +F+DMA+LV++QGE +D IE  V+ A  YV       + A +  +K
Sbjct:  123 LSRKFVEVMSEYNATQSDYRERCKGRIQRQL-EITGRTTTSEELEDMLESGNPAIFASGIIMDSSISK--QALSEIETRHSEIIKLETSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSK 260          
BLAST of CF504382 vs. ExPASy Swiss-Prot
Match: STX4_HUMAN (Syntaxin-4 OS=Homo sapiens GN=STX4 PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 8.652e-12
Identity = 38/130 (29.23%), Postives = 71/130 (54.62%), Query Frame = 3
Query:   81 ISSEYRDT----VQRRYYTVTGENPDEKTLDRLISTGESETFLQKAIQEQGRGRILDTINEIQERHDAVKVLEKNLQELHQVFLDMAVLVQAQGEQLDDIESQVQRANSYVRGGTERLQTAREVSAKYPK 458
            + SEYR+     ++R+          ++ L++++ +G+SE F+   +++    R    +NEI  RH  ++ LE++++ELH +F  +A  V+ QGE ++ IE  +  +  YV  G E ++TA E   K  K
Sbjct:  144 MQSEYREKNVERIRRQLKITNAGMVSDEELEQMLDSGQSEVFVSNILKDTQVTR--QALNEISARHSEIQQLERSIRELHDIFTFLATEVEMQGEMINRIEKNILSSADYVERGQEHVKTALENQKKARK 271          
BLAST of CF504382 vs. ExPASy Swiss-Prot
Match: STX1A_BOVIN (Syntaxin-1A OS=Bos taurus GN=STX1A PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.130e-11
Identity = 38/141 (26.95%), Postives = 71/141 (50.35%), Query Frame = 3
Query:   27 LRKKLKDSMESFNELRQRISSEYRDTVQRRYYTVTGENPDEKTLDRLISTGESETFLQKAIQEQGRGRILDTINEIQERHDAVKVLEKNLQELHQVFLDMAVLVQAQGEQLDDIESQVQRANSYVRGGTERLQTAREVSAK 449
            L +K  + M  +N  +       +  +QR+   +TG     + L+ ++ +G    F    I +    +    ++EI+ RH  +  LE +++ELH +F+DMA+LV++QGE +D IE  V+ +  YV       + A +  +K
Sbjct:  123 LSRKFVEVMSEYNATQSDYRERCKGRIQRQL-EITGRTTTSEELEDMLESGNPAIFASGIIMDSSISK--QALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHSVDYVERAVSDTKKAVKYQSK 260          
BLAST of CF504382 vs. ExPASy Swiss-Prot
Match: STX4_MOUSE (Syntaxin-4 OS=Mus musculus GN=Stx4 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.927e-11
Identity = 44/156 (28.21%), Postives = 82/156 (52.56%), Query Frame = 3
Query:   18 VNGLRKKLKDSM--ESFNELRQR---ISSEYRDT----VQRRYYTVTGENPDEKTLDRLISTGESETFLQKAIQEQGRGRILDTINEIQERHDAVKVLEKNLQELHQVFLDMAVLVQAQGEQLDDIESQVQRANSYVRGGTERLQTAREVSAKYPK 458
            VN   KK +  +  + F EL  +   + SEYR+     ++R+          ++ L++++ +G+SE F+   +++    R    +NEI  RH  ++ LE++++ELH++F  +A  V+ QGE ++ IE  +  +  YV  G E ++ A E   K  K
Sbjct:  118 VNTRMKKTQHGVLSQQFVELINKCNSMQSEYREKNVERIRRQLKITNAGMVSDEELEQMLDSGQSEVFVSNILKDTQVTR--QALNEISARHSEIQQLERSIRELHEIFTFLATEVEMQGEMINRIEKNILSSADYVERGQEHVKIALENQKKARK 271          
BLAST of CF504382 vs. ExPASy Swiss-Prot
Match: STX4_RAT (Syntaxin-4 OS=Rattus norvegicus GN=Stx4 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.517e-11
Identity = 44/156 (28.21%), Postives = 81/156 (51.92%), Query Frame = 3
Query:   18 VNGLRKKLKDSM--ESFNELRQR---ISSEYRDT----VQRRYYTVTGENPDEKTLDRLISTGESETFLQKAIQEQGRGRILDTINEIQERHDAVKVLEKNLQELHQVFLDMAVLVQAQGEQLDDIESQVQRANSYVRGGTERLQTAREVSAKYPK 458
            VN   KK +  +  + F EL  +   + SEYR+     ++R+          ++ L++++ +G+SE F+   +++    R    +NEI  RH  ++ LE+ ++ELH++F  +A  V+ QGE ++ IE  +  +  YV  G E ++ A E   K  K
Sbjct:  118 VNTRMKKTQHGVLSQQFVELINKCNSMQSEYREKNVERIRRQLKITNAGMVSDEELEQMLDSGQSEVFVSNILKDTQVTR--QALNEISARHSEIQQLERTIRELHEIFTFLATEVEMQGEMINRIEKNILSSADYVERGQEHVKIALENQKKARK 271          
The following BLAST results are available for this feature:
BLAST of CF504382 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
STX1A_RAT5.072e-1227.66Syntaxin-1A OS=Rattus norvegicus GN=Stx1a PE=1 SV=... [more]
STX1A_PONAB5.072e-1227.66Syntaxin-1A OS=Pongo abelii GN=STX1A PE=2 SV=1[more]
STX1A_HUMAN5.072e-1227.66Syntaxin-1A OS=Homo sapiens GN=STX1A PE=1 SV=1[more]
STX1A_CAEEL5.072e-1228.80Syntaxin-1A homolog OS=Caenorhabditis elegans GN=u... [more]
STX1A_CAEBR5.072e-1228.80Syntaxin-1A OS=Caenorhabditis briggsae GN=unc-64 P... [more]
STX1A_MOUSE6.625e-1227.66Syntaxin-1A OS=Mus musculus GN=Stx1a PE=1 SV=3[more]
STX4_HUMAN8.652e-1229.23Syntaxin-4 OS=Homo sapiens GN=STX4 PE=1 SV=2[more]
STX1A_BOVIN1.130e-1126.95Syntaxin-1A OS=Bos taurus GN=STX1A PE=1 SV=1[more]
STX4_MOUSE1.927e-1128.21Syntaxin-4 OS=Mus musculus GN=Stx4 PE=1 SV=1[more]
STX4_RAT2.517e-1128.21Syntaxin-4 OS=Rattus norvegicus GN=Stx4 PE=1 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-871 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-17_F12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504382 ID=CF504382; Name=CF504382; organism=Citrus sinensis; type=EST; length=509bp
GGACCAGGACCTCCGTGGTCAACGGGCTGAGGAAGAAGCTGAAGGACTCG
ATGGAGAGTTTTAACGAGTTGAGGCAGAGGATTTCGTCCGAGTATAGGGA
CACCGTTCAGAGGAGGTACTATACGGTCACCGGAGAGAATCCCGACGAGA
AGACCTTAGATCGCTTGATTTCTACTGGAGAGAGTGAAACATTCTTGCAG
AAAGCAATTCAGGAGCAAGGAAGGGGAAGAATTTTGGACACCATAAATGA
GATACAAGAGAGGCATGATGCCGTGAAAGTGCTGGAGAAAAATCTTCAGG
AATTGCACCAAGTTTTCCTAGACATGGCGGTATTGGTCCAGGCCCAAGGT
GAACAATTGGACGACATTGAGAGCCAGGTGCAACGAGCTAATTCATATGT
CAGAGGCGGGACCGAGAGATTGCAAACAGCCCGGGAAGTATCAGCTAAGT
ACCCGAAAATGGACCTGTATCGCCATCACAATATTGCTAATCATAATCCT
GTTTGTGGG
back to top