CF504388

Overview
NameCF504388
Unique NameCF504388
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length245
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_NOCFA (Valyl-tRNA synthetase OS=Nocardia farcinica GN=valS PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 2.387e-25
Identity = 51/80 (63.75%), Postives = 61/80 (76.25%), Query Frame = 2
Query:    5 YSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            Y  W ++GYF AD  S KP++ IVLPPPNVTG LH+GHAL   + DT+ R +RM GY  LW+PGMDHAGIATQ VVEK+L
Sbjct:   30 YERWVSAGYFTADPASGKPAYSIVLPPPNVTGTLHMGHALDHTLMDTLARRKRMQGYEVLWLPGMDHAGIATQTVVEKQL 109          
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_CHRVO (Valyl-tRNA synthetase OS=Chromobacterium violaceum GN=valS PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 3.118e-25
Identity = 50/81 (61.73%), Postives = 59/81 (72.84%), Query Frame = 2
Query:    2 WYSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            WY  WE +GYF     +SKPSF I LPPPNVTG LH+GHA    I D + R+ RM G+N LWVPG DHAGIATQ+VVE++L
Sbjct:   17 WYQHWEQAGYFKPSMDTSKPSFAIQLPPPNVTGTLHMGHAFNQTIMDGLTRFYRMKGHNTLWVPGTDHAGIATQIVVERQL 97          
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_CHLCV (Valyl-tRNA synthetase OS=Chlamydophila caviae GN=valS PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 3.118e-25
Identity = 48/80 (60.00%), Postives = 61/80 (76.25%), Query Frame = 2
Query:    5 YSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            Y++WE SG F A + S KP + I++PPPNVTG LH+GHAL   +QD +IR++RMSG+   WVPG DHAGIATQ VVE+ L
Sbjct:   20 YAFWEGSGMFTAQSASDKPPYAIIMPPPNVTGILHMGHALVNTLQDVLIRYKRMSGFEVCWVPGTDHAGIATQTVVERHL 99          
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYVM_PIG (Valyl-tRNA synthetase, mitochondrial OS=Sus scrofa GN=VARS2 PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 3.118e-25
Identity = 51/86 (59.30%), Postives = 61/86 (70.93%), Query Frame = 2
Query:    2 WYSWWENSGYFIADNKSSKP-----SFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            WY WW   G+F  + ++  P     +F + +PPPNVTG+LHIGHALT AIQD ++RW RM G   LWVPG DHAGIATQ VVEKKL
Sbjct:  113 WYPWWVREGFFKPEYQTRLPQATGETFSMCIPPPNVTGSLHIGHALTVAIQDALVRWHRMRGDRVLWVPGSDHAGIATQAVVEKKL 198          
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_CHLFF (Valyl-tRNA synthetase OS=Chlamydophila felis (strain Fe/C-56) GN=valS PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 4.072e-25
Identity = 47/80 (58.75%), Postives = 63/80 (78.75%), Query Frame = 2
Query:    5 YSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            Y++WE++G F A + S+KP + I++PPPNVTG LH+GHAL   +QD +IR++RMSG+   WVPG DHAGIATQ VVE+ L
Sbjct:   20 YAFWEDAGMFTAQSASNKPPYAIIMPPPNVTGILHMGHALVNTLQDVLIRYKRMSGFEVCWVPGTDHAGIATQTVVERHL 99          
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYVC_TAKRU (Valyl-tRNA synthetase OS=Takifugu rubripes GN=vars PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 4.072e-25
Identity = 51/88 (57.95%), Postives = 62/88 (70.45%), Query Frame = 2
Query:    2 WYSWWENSGYFIAD-------NKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            WY WWE  G+F  +        ++ +  F++ +PPPNVTG+LH+GHALT AIQDT+ RW RM G   LW PG DHAGIATQVVVEKKL
Sbjct:  258 WYPWWEKQGFFKPEFGRKSIGEQNPRGIFMMCIPPPNVTGSLHLGHALTNAIQDTLTRWHRMRGETTLWNPGCDHAGIATQVVVEKKL 345          
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_MYCLE (Valyl-tRNA synthetase OS=Mycobacterium leprae GN=valS PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 5.318e-25
Identity = 52/80 (65.00%), Postives = 60/80 (75.00%), Query Frame = 2
Query:    5 YSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            Y  W NSGYF AD  S+KP + IVLPPPNVTG+LH+GHAL   + D + R +RM GY  LW PGMDHAGIATQ VVEK+L
Sbjct:   26 YQKWLNSGYFAADPASTKPGYSIVLPPPNVTGSLHMGHALEHTMMDALTRRKRMQGYEVLWQPGMDHAGIATQSVVEKQL 105          
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_DEHE1 (Valyl-tRNA synthetase OS=Dehalococcoides ethenogenes (strain 195) GN=valS PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 5.318e-25
Identity = 49/81 (60.49%), Postives = 59/81 (72.84%), Query Frame = 2
Query:    2 WYSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            WY +W   GYF  +  S K  FVI++PPPNVTG LH+GHALT  ++D +IRW RM G  ALW+PG DHAGIA QVVVE+ L
Sbjct:   23 WYQYWMEKGYFKPNPDSDKKPFVIIMPPPNVTGELHLGHALTATLEDIMIRWHRMLGEPALWLPGADHAGIAAQVVVERML 103          
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_PELCD (Valyl-tRNA synthetase OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=valS PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 6.946e-25
Identity = 49/81 (60.49%), Postives = 58/81 (71.60%), Query Frame = 2
Query:    2 WYSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            WY +W  +G F AD  S K  F IV+PPPNVTG LH+GHAL   +QD + RW+RM G+  LW PG DHAGIATQ VVEK+L
Sbjct:   32 WYEFWTENGLFHADENSPKNPFSIVIPPPNVTGVLHMGHALNNTLQDILARWKRMDGHEVLWQPGTDHAGIATQNVVEKQL 112          
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_FUSNN (Valyl-tRNA synthetase OS=Fusobacterium nucleatum subsp. nucleatum GN=valS PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 9.071e-25
Identity = 50/81 (61.73%), Postives = 61/81 (75.31%), Query Frame = 2
Query:    2 WYSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            WY  WE+S YF A   S K ++ IV+PPPNVTG LH+GH L  +IQDT+IR+ RM+G N LW+PG DHAGIATQ  VE+KL
Sbjct:   17 WYKIWEDSKYFAASLSSEKENYSIVIPPPNVTGILHMGHVLNNSIQDTLIRYNRMTGKNTLWMPGCDHAGIATQNKVERKL 97          
The following BLAST results are available for this feature:
BLAST of CF504388 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 294
Match NameE-valueIdentityDescription
SYV_NOCFA2.387e-2563.75Valyl-tRNA synthetase OS=Nocardia farcinica GN=val... [more]
SYV_CHRVO3.118e-2561.73Valyl-tRNA synthetase OS=Chromobacterium violaceum... [more]
SYV_CHLCV3.118e-2560.00Valyl-tRNA synthetase OS=Chlamydophila caviae GN=v... [more]
SYVM_PIG3.118e-2559.30Valyl-tRNA synthetase, mitochondrial OS=Sus scrofa... [more]
SYV_CHLFF4.072e-2558.75Valyl-tRNA synthetase OS=Chlamydophila felis (stra... [more]
SYVC_TAKRU4.072e-2557.95Valyl-tRNA synthetase OS=Takifugu rubripes GN=vars... [more]
SYV_MYCLE5.318e-2565.00Valyl-tRNA synthetase OS=Mycobacterium leprae GN=v... [more]
SYV_DEHE15.318e-2560.49Valyl-tRNA synthetase OS=Dehalococcoides ethenogen... [more]
SYV_PELCD6.946e-2560.49Valyl-tRNA synthetase OS=Pelobacter carbinolicus (... [more]
SYV_FUSNN9.071e-2561.73Valyl-tRNA synthetase OS=Fusobacterium nucleatum s... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-877 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-17_G07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504388 ID=CF504388; Name=CF504388; organism=Citrus sinensis; type=EST; length=245bp
GTGGTATTCGTGGTGGGAGAACTCTGGATATTTCATTGCAGATAACAAGA
GCTCGAAGCCATCCTTTGTGATTGTTCTACCCCCACCAAATGTGACTGGT
GCCCTACATATAGGACATGCCCTCACAACAGCCATACAGGATACAATTAT
ACGTTGGAGGAGAATGTCTGGATATAATGCCTTGTGGGTACCTGGCATGG
ACCATGCTGGGATTGCAACACAGGTGGTTGTAGAGAAGAAGCTAA
back to top