CF504388

Overview
NameCF504388
Unique NameCF504388
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length245
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_AZOSE (Valyl-tRNA synthetase OS=Azoarcus sp. (strain EbN1) GN=valS PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.503e-22
Identity = 46/82 (56.10%), Postives = 59/82 (71.95%), Query Frame = 2
Query:    2 WYSWWENSGYFIAD-NKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            WY  WE+ G+F A  +KS+  +F I+LPPPNVTG LH+GH     I D + R+ RM G+N LW PG DHAGIATQ+VVE++L
Sbjct:   16 WYPEWESRGHFDAGLDKSNPNAFCILLPPPNVTGTLHMGHGFNQTIMDALTRYHRMRGFNTLWQPGTDHAGIATQIVVERQL 97          
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_YEAST (Valyl-tRNA synthetase, mitochondrial OS=Saccharomyces cerevisiae GN=VAS1 PE=1 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 7.188e-22
Identity = 53/87 (60.92%), Postives = 61/87 (70.11%), Query Frame = 2
Query:    2 WYSWWENSGYF----IADNKSSKPS--FVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            WY WW  +G F     AD K  KP   F I  PPPNVTGALHIGHALT AIQD++IR+ RM G   L++PG DHAGIATQ VVEK++
Sbjct:  157 WYDWWIKTGVFEPEFTADGKV-KPEGVFCIPAPPPNVTGALHIGHALTIAIQDSLIRYNRMKGKTVLFLPGFDHAGIATQSVVEKQI 242          
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_SPHWW (Valyl-tRNA synthetase OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) GN=valS PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 7.188e-22
Identity = 46/81 (56.79%), Postives = 62/81 (76.54%), Query Frame = 2
Query:    2 WYSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            WY+ WE++G F  +   ++P + IV+PPPNVTG+LHIGHAL   +QD +IR  R+ G +ALWV G DHAGIATQ+VVE++L
Sbjct:   16 WYAHWEDNGLFRPERPEAEP-YTIVIPPPNVTGSLHIGHALDDTLQDVLIRHARLKGKDALWVVGTDHAGIATQMVVERQL 95          
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_RHOBA (Valyl-tRNA synthetase OS=Rhodopirellula baltica GN=valS PE=3 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 7.188e-22
Identity = 44/77 (57.14%), Postives = 58/77 (75.32%), Query Frame = 2
Query:   14 WENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            W ++    AD +SSKP F +V+PPPNVTGALH+GH L   +QD ++R +RM G+  LW+PG DHAGIATQ VVE++L
Sbjct:   21 WTDAKCSHADPESSKPPFSVVIPPPNVTGALHLGHGLNNTLQDIVVRRKRMQGFETLWMPGTDHAGIATQAVVERRL 97          
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_MYCS5 (Valyl-tRNA synthetase OS=Mycoplasma synoviae (strain 53) GN=valS PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 7.188e-22
Identity = 49/79 (62.03%), Postives = 59/79 (74.68%), Query Frame = 2
Query:    8 SWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            S W    YFI  N   KP F I+LPPPNVTG LH+GHAL + I DTIIR++++SGY+ LW+PGMDHAGIATQ  VE +L
Sbjct:   16 SKWREKKYFIDHNLDKKP-FSILLPPPNVTGKLHLGHALDSYIPDTIIRFKKLSGYDVLWLPGMDHAGIATQSKVESEL 93          
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_MANSM (Valyl-tRNA synthetase OS=Mannheimia succiniciproducens (strain MBEL55E) GN=valS PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 7.188e-22
Identity = 44/80 (55.00%), Postives = 57/80 (71.25%), Query Frame = 2
Query:    5 YSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            Y+ WE  GYF     + +PS+ I +PPPNVTG+LH+GHA    + DT+IR+ RM G N LW  G DHAGIATQ+VVE+K+
Sbjct:   21 YNHWEQKGYFKPSYDAGRPSYSIAIPPPNVTGSLHMGHAFQQTLMDTLIRYHRMQGDNTLWQAGTDHAGIATQMVVERKI 100          
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_LEPIN (Valyl-tRNA synthetase OS=Leptospira interrogans GN=valS PE=3 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 7.188e-22
Identity = 48/81 (59.26%), Postives = 60/81 (74.07%), Query Frame = 2
Query:    2 WYSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            W S WE    F A N +++ SF IV+PPPNVTG+LHIGHAL   IQD ++R  R  G + LW+PGMDHAGIATQ+VVE++L
Sbjct:   18 WISLWEKKKSF-APNSNARESFSIVIPPPNVTGSLHIGHALNHTIQDILVRIERKKGKSTLWLPGMDHAGIATQMVVEREL 97          
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_LEPIC (Valyl-tRNA synthetase OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=valS PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 7.188e-22
Identity = 48/81 (59.26%), Postives = 60/81 (74.07%), Query Frame = 2
Query:    2 WYSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            W S WE    F A N +++ SF IV+PPPNVTG+LHIGHAL   IQD ++R  R  G + LW+PGMDHAGIATQ+VVE++L
Sbjct:   18 WISLWEKKKSF-APNSNARESFSIVIPPPNVTGSLHIGHALNHTIQDILVRIERKKGKSTLWLPGMDHAGIATQMVVEREL 97          
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_BURPS (Valyl-tRNA synthetase OS=Burkholderia pseudomallei GN=valS PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 7.188e-22
Identity = 46/81 (56.79%), Postives = 55/81 (67.90%), Query Frame = 2
Query:    2 WYSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            W   WE  GY       S+P F I LPPPNVTG LH+GHA    I D ++R+ RM G+N LWVPG DHAGIATQ+VVE++L
Sbjct:   19 WGPEWEKRGYATPALDPSRPDFSIQLPPPNVTGTLHMGHAFNQTIMDGLVRYHRMLGHNTLWVPGTDHAGIATQIVVERQL 99          
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_BURMA (Valyl-tRNA synthetase OS=Burkholderia mallei GN=valS PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 7.188e-22
Identity = 46/81 (56.79%), Postives = 55/81 (67.90%), Query Frame = 2
Query:    2 WYSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            W   WE  GY       S+P F I LPPPNVTG LH+GHA    I D ++R+ RM G+N LWVPG DHAGIATQ+VVE++L
Sbjct:   19 WGPEWEKRGYATPALDPSRPDFSIQLPPPNVTGTLHMGHAFNQTIMDGLVRYHRMLGHNTLWVPGTDHAGIATQIVVERQL 99          
The following BLAST results are available for this feature:
BLAST of CF504388 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 294
Match NameE-valueIdentityDescription
SYV_AZOSE5.503e-2256.10Valyl-tRNA synthetase OS=Azoarcus sp. (strain EbN1... [more]
SYV_YEAST7.188e-2260.92Valyl-tRNA synthetase, mitochondrial OS=Saccharomy... [more]
SYV_SPHWW7.188e-2256.79Valyl-tRNA synthetase OS=Sphingomonas wittichii (s... [more]
SYV_RHOBA7.188e-2257.14Valyl-tRNA synthetase OS=Rhodopirellula baltica GN... [more]
SYV_MYCS57.188e-2262.03Valyl-tRNA synthetase OS=Mycoplasma synoviae (stra... [more]
SYV_MANSM7.188e-2255.00Valyl-tRNA synthetase OS=Mannheimia succiniciprodu... [more]
SYV_LEPIN7.188e-2259.26Valyl-tRNA synthetase OS=Leptospira interrogans GN... [more]
SYV_LEPIC7.188e-2259.26Valyl-tRNA synthetase OS=Leptospira interrogans se... [more]
SYV_BURPS7.188e-2256.79Valyl-tRNA synthetase OS=Burkholderia pseudomallei... [more]
SYV_BURMA7.188e-2256.79Valyl-tRNA synthetase OS=Burkholderia mallei GN=va... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-877 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-17_G07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504388 ID=CF504388; Name=CF504388; organism=Citrus sinensis; type=EST; length=245bp
GTGGTATTCGTGGTGGGAGAACTCTGGATATTTCATTGCAGATAACAAGA
GCTCGAAGCCATCCTTTGTGATTGTTCTACCCCCACCAAATGTGACTGGT
GCCCTACATATAGGACATGCCCTCACAACAGCCATACAGGATACAATTAT
ACGTTGGAGGAGAATGTCTGGATATAATGCCTTGTGGGTACCTGGCATGG
ACCATGCTGGGATTGCAACACAGGTGGTTGTAGAGAAGAAGCTAA
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