CF504388

Overview
NameCF504388
Unique NameCF504388
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length245
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_ACTPJ (Valyl-tRNA synthetase OS=Actinobacillus pleuropneumoniae serotype 3 (strain JL03) GN=valS PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 7.188e-22
Identity = 45/80 (56.25%), Postives = 55/80 (68.75%), Query Frame = 2
Query:    5 YSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            Y  WE  GYF      S PS+ I +PPPNVTG+LH+GHA    + DT+IR+ RM G N LW  G DHAGIATQ+VVE+K+
Sbjct:   21 YKHWEEQGYFKPTENPSLPSYCIAIPPPNVTGSLHMGHAFQQTLMDTLIRFNRMEGNNTLWQTGTDHAGIATQMVVERKI 100          
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_ACTP7 (Valyl-tRNA synthetase OS=Actinobacillus pleuropneumoniae serotype 7 (strain AP76) GN=valS PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 7.188e-22
Identity = 45/80 (56.25%), Postives = 55/80 (68.75%), Query Frame = 2
Query:    5 YSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            Y  WE  GYF      S PS+ I +PPPNVTG+LH+GHA    + DT+IR+ RM G N LW  G DHAGIATQ+VVE+K+
Sbjct:   21 YKHWEEQGYFKPTENPSLPSYCIAIPPPNVTGSLHMGHAFQQTLMDTLIRFNRMEGNNTLWQTGTDHAGIATQMVVERKI 100          
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_ACTP2 (Valyl-tRNA synthetase OS=Actinobacillus pleuropneumoniae serotype 5b (strain L20) GN=valS PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 7.188e-22
Identity = 45/80 (56.25%), Postives = 55/80 (68.75%), Query Frame = 2
Query:    5 YSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            Y  WE  GYF      S PS+ I +PPPNVTG+LH+GHA    + DT+IR+ RM G N LW  G DHAGIATQ+VVE+K+
Sbjct:   21 YKHWEEQGYFKPTENPSLPSYCIAIPPPNVTGSLHMGHAFQQTLMDTLIRFNRMEGNNTLWQTGTDHAGIATQMVVERKI 100          
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_STAES (Valyl-tRNA synthetase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=valS PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 9.387e-22
Identity = 46/80 (57.50%), Postives = 57/80 (71.25%), Query Frame = 2
Query:    5 YSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            Y  W ++GYF      SK ++ IV+PPPNVTG LH+GHA  T +QD I R +RM GY+ L++PGMDHAGIATQ  VE KL
Sbjct:   17 YEEWVSNGYFKPSEDKSKEAYTIVIPPPNVTGKLHLGHAWDTTLQDIITRMKRMQGYDTLYLPGMDHAGIATQAKVEAKL 96          
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_STAEQ (Valyl-tRNA synthetase OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=valS PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 9.387e-22
Identity = 46/80 (57.50%), Postives = 57/80 (71.25%), Query Frame = 2
Query:    5 YSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            Y  W ++GYF      SK ++ IV+PPPNVTG LH+GHA  T +QD I R +RM GY+ L++PGMDHAGIATQ  VE KL
Sbjct:   17 YEEWVSNGYFKPSEDKSKEAYTIVIPPPNVTGKLHLGHAWDTTLQDIITRMKRMQGYDTLYLPGMDHAGIATQAKVEAKL 96          
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_BUCAP (Valyl-tRNA synthetase OS=Buchnera aphidicola subsp. Schizaphis graminum GN=valS PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 9.387e-22
Identity = 41/80 (51.25%), Postives = 60/80 (75.00%), Query Frame = 2
Query:    5 YSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            Y++WE +G+F  +N  +KP+F I++PPPN+TG LH+GHA    I D +IR+ RM G N LW  G DHAGIATQ+++E+++
Sbjct:   15 YNFWEKNGFFKPNNNLNKPAFCIMMPPPNITGNLHMGHAFQQTIMDILIRYNRMQGKNTLWQVGTDHAGIATQILIERQI 94          
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_AQUAE (Valyl-tRNA synthetase OS=Aquifex aeolicus GN=valS PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 9.387e-22
Identity = 42/81 (51.85%), Postives = 55/81 (67.90%), Query Frame = 2
Query:    2 WYSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            W  +W     +  +    +  F +V+PPPNVTG+LH+GHAL   +QD I+RW+RM G   +WVPG DHAGIATQ VVEK+L
Sbjct:   15 WSRYWIEKALYHVEKPDKRKKFSVVIPPPNVTGSLHMGHALNATLQDVIVRWQRMRGRECVWVPGFDHAGIATQYVVEKQL 95          
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_VIBVY (Valyl-tRNA synthetase OS=Vibrio vulnificus (strain YJ016) GN=valS PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.226e-21
Identity = 46/80 (57.50%), Postives = 56/80 (70.00%), Query Frame = 2
Query:    5 YSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            Y  WE  GYF     +SK S+ I++PPPNVTG+LH+GHA    I DT+IR  RM G N LW  G DHAGIATQ+VVE+K+
Sbjct:   15 YKTWEEQGYFKPHGDTSKESYSIMIPPPNVTGSLHMGHAFQDTIMDTLIRCERMKGKNTLWQVGTDHAGIATQMVVERKI 94          
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_VIBVU (Valyl-tRNA synthetase OS=Vibrio vulnificus GN=valS PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.226e-21
Identity = 46/80 (57.50%), Postives = 56/80 (70.00%), Query Frame = 2
Query:    5 YSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            Y  WE  GYF     +SK S+ I++PPPNVTG+LH+GHA    I DT+IR  RM G N LW  G DHAGIATQ+VVE+K+
Sbjct:   15 YKTWEEQGYFKPHGDTSKESYSIMIPPPNVTGSLHMGHAFQDTIMDTLIRCERMKGKNTLWQVGTDHAGIATQMVVERKI 94          
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_STAAW (Valyl-tRNA synthetase OS=Staphylococcus aureus (strain MW2) GN=valS PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.226e-21
Identity = 46/80 (57.50%), Postives = 56/80 (70.00%), Query Frame = 2
Query:    5 YSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            Y  W  +GYF      SK ++ IV+PPPNVTG LH+GHA  T +QD I R +RM GY+ L++PGMDHAGIATQ  VE KL
Sbjct:   17 YEEWVKNGYFKPSEDKSKETYTIVIPPPNVTGKLHLGHAWDTTLQDIITRMKRMQGYDTLYLPGMDHAGIATQAKVEAKL 96          
The following BLAST results are available for this feature:
BLAST of CF504388 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 294
Match NameE-valueIdentityDescription
SYV_ACTPJ7.188e-2256.25Valyl-tRNA synthetase OS=Actinobacillus pleuropneu... [more]
SYV_ACTP77.188e-2256.25Valyl-tRNA synthetase OS=Actinobacillus pleuropneu... [more]
SYV_ACTP27.188e-2256.25Valyl-tRNA synthetase OS=Actinobacillus pleuropneu... [more]
SYV_STAES9.387e-2257.50Valyl-tRNA synthetase OS=Staphylococcus epidermidi... [more]
SYV_STAEQ9.387e-2257.50Valyl-tRNA synthetase OS=Staphylococcus epidermidi... [more]
SYV_BUCAP9.387e-2251.25Valyl-tRNA synthetase OS=Buchnera aphidicola subsp... [more]
SYV_AQUAE9.387e-2251.85Valyl-tRNA synthetase OS=Aquifex aeolicus GN=valS ... [more]
SYV_VIBVY1.226e-2157.50Valyl-tRNA synthetase OS=Vibrio vulnificus (strain... [more]
SYV_VIBVU1.226e-2157.50Valyl-tRNA synthetase OS=Vibrio vulnificus GN=valS... [more]
SYV_STAAW1.226e-2157.50Valyl-tRNA synthetase OS=Staphylococcus aureus (st... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-877 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-17_G07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504388 ID=CF504388; Name=CF504388; organism=Citrus sinensis; type=EST; length=245bp
GTGGTATTCGTGGTGGGAGAACTCTGGATATTTCATTGCAGATAACAAGA
GCTCGAAGCCATCCTTTGTGATTGTTCTACCCCCACCAAATGTGACTGGT
GCCCTACATATAGGACATGCCCTCACAACAGCCATACAGGATACAATTAT
ACGTTGGAGGAGAATGTCTGGATATAATGCCTTGTGGGTACCTGGCATGG
ACCATGCTGGGATTGCAACACAGGTGGTTGTAGAGAAGAAGCTAA
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