CF504388

Overview
NameCF504388
Unique NameCF504388
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length245
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_STAAT (Valyl-tRNA synthetase OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=valS PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.226e-21
Identity = 46/80 (57.50%), Postives = 56/80 (70.00%), Query Frame = 2 
Query:    5 YSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            Y  W  +GYF      SK ++ IV+PPPNVTG LH+GHA  T +QD I R +RM GY+ L++PGMDHAGIATQ  VE KL
Sbjct:   17 YEEWVKNGYFKPSEDKSKETYTIVIPPPNVTGKLHLGHAWDTTLQDIITRMKRMQGYDTLYLPGMDHAGIATQAKVEAKL 96
[Close]
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_STAAS (Valyl-tRNA synthetase OS=Staphylococcus aureus (strain MSSA476) GN=valS PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.226e-21
Identity = 46/80 (57.50%), Postives = 56/80 (70.00%), Query Frame = 2 
Query:    5 YSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            Y  W  +GYF      SK ++ IV+PPPNVTG LH+GHA  T +QD I R +RM GY+ L++PGMDHAGIATQ  VE KL
Sbjct:   17 YEEWVKNGYFKPSEDKSKETYTIVIPPPNVTGKLHLGHAWDTTLQDIITRMKRMQGYDTLYLPGMDHAGIATQAKVEAKL 96
[Close]
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_STAAR (Valyl-tRNA synthetase OS=Staphylococcus aureus (strain MRSA252) GN=valS PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.226e-21
Identity = 46/80 (57.50%), Postives = 56/80 (70.00%), Query Frame = 2 
Query:    5 YSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            Y  W  +GYF      SK ++ IV+PPPNVTG LH+GHA  T +QD I R +RM GY+ L++PGMDHAGIATQ  VE KL
Sbjct:   17 YEEWVKNGYFKPSEDKSKETYTIVIPPPNVTGKLHLGHAWDTTLQDIITRMKRMQGYDTLYLPGMDHAGIATQAKVEAKL 96
[Close]
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_STAAN (Valyl-tRNA synthetase OS=Staphylococcus aureus (strain N315) GN=valS PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.226e-21
Identity = 46/80 (57.50%), Postives = 56/80 (70.00%), Query Frame = 2 
Query:    5 YSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            Y  W  +GYF      SK ++ IV+PPPNVTG LH+GHA  T +QD I R +RM GY+ L++PGMDHAGIATQ  VE KL
Sbjct:   17 YEEWVKNGYFKPSEDKSKETYTIVIPPPNVTGKLHLGHAWDTTLQDIITRMKRMQGYDTLYLPGMDHAGIATQAKVEAKL 96
[Close]
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_STAAM (Valyl-tRNA synthetase OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=valS PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.226e-21
Identity = 46/80 (57.50%), Postives = 56/80 (70.00%), Query Frame = 2 
Query:    5 YSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            Y  W  +GYF      SK ++ IV+PPPNVTG LH+GHA  T +QD I R +RM GY+ L++PGMDHAGIATQ  VE KL
Sbjct:   17 YEEWVKNGYFKPSEDKSKETYTIVIPPPNVTGKLHLGHAWDTTLQDIITRMKRMQGYDTLYLPGMDHAGIATQAKVEAKL 96
[Close]
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_STAAE (Valyl-tRNA synthetase OS=Staphylococcus aureus (strain Newman) GN=valS PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.226e-21
Identity = 46/80 (57.50%), Postives = 56/80 (70.00%), Query Frame = 2 
Query:    5 YSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            Y  W  +GYF      SK ++ IV+PPPNVTG LH+GHA  T +QD I R +RM GY+ L++PGMDHAGIATQ  VE KL
Sbjct:   17 YEEWVKNGYFKPSEDKSKETYTIVIPPPNVTGKLHLGHAWDTTLQDIITRMKRMQGYDTLYLPGMDHAGIATQAKVEAKL 96
[Close]
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_STAAC (Valyl-tRNA synthetase OS=Staphylococcus aureus (strain COL) GN=valS PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.226e-21
Identity = 46/80 (57.50%), Postives = 56/80 (70.00%), Query Frame = 2 
Query:    5 YSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            Y  W  +GYF      SK ++ IV+PPPNVTG LH+GHA  T +QD I R +RM GY+ L++PGMDHAGIATQ  VE KL
Sbjct:   17 YEEWVKNGYFKPSEDKSKETYTIVIPPPNVTGKLHLGHAWDTTLQDIITRMKRMQGYDTLYLPGMDHAGIATQAKVEAKL 96
[Close]
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_STAAB (Valyl-tRNA synthetase OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=valS PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.226e-21
Identity = 46/80 (57.50%), Postives = 56/80 (70.00%), Query Frame = 2 
Query:    5 YSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            Y  W  +GYF      SK ++ IV+PPPNVTG LH+GHA  T +QD I R +RM GY+ L++PGMDHAGIATQ  VE KL
Sbjct:   17 YEEWVKNGYFKPSEDKSKETYTIVIPPPNVTGKLHLGHAWDTTLQDIITRMKRMQGYDTLYLPGMDHAGIATQAKVEAKL 96
[Close]
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_STAA9 (Valyl-tRNA synthetase OS=Staphylococcus aureus (strain JH9) GN=valS PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.226e-21
Identity = 46/80 (57.50%), Postives = 56/80 (70.00%), Query Frame = 2 
Query:    5 YSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            Y  W  +GYF      SK ++ IV+PPPNVTG LH+GHA  T +QD I R +RM GY+ L++PGMDHAGIATQ  VE KL
Sbjct:   17 YEEWVKNGYFKPSEDKSKETYTIVIPPPNVTGKLHLGHAWDTTLQDIITRMKRMQGYDTLYLPGMDHAGIATQAKVEAKL 96
[Close]
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_STAA8 (Valyl-tRNA synthetase OS=Staphylococcus aureus (strain NCTC 8325) GN=valS PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.226e-21
Identity = 46/80 (57.50%), Postives = 56/80 (70.00%), Query Frame = 2 
Query:    5 YSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            Y  W  +GYF      SK ++ IV+PPPNVTG LH+GHA  T +QD I R +RM GY+ L++PGMDHAGIATQ  VE KL
Sbjct:   17 YEEWVKNGYFKPSEDKSKETYTIVIPPPNVTGKLHLGHAWDTTLQDIITRMKRMQGYDTLYLPGMDHAGIATQAKVEAKL 96
The following BLAST results are available for this feature:
BLAST of CF504388 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 294
Match NameE-valueIdentityDescription
SYV_STAAT1.226e-2157.50Valyl-tRNA synthetase OS=Staphylococcus aureus (st... [more]
SYV_STAAS1.226e-2157.50Valyl-tRNA synthetase OS=Staphylococcus aureus (st... [more]
SYV_STAAR1.226e-2157.50Valyl-tRNA synthetase OS=Staphylococcus aureus (st... [more]
SYV_STAAN1.226e-2157.50Valyl-tRNA synthetase OS=Staphylococcus aureus (st... [more]
SYV_STAAM1.226e-2157.50Valyl-tRNA synthetase OS=Staphylococcus aureus (st... [more]
SYV_STAAE1.226e-2157.50Valyl-tRNA synthetase OS=Staphylococcus aureus (st... [more]
SYV_STAAC1.226e-2157.50Valyl-tRNA synthetase OS=Staphylococcus aureus (st... [more]
SYV_STAAB1.226e-2157.50Valyl-tRNA synthetase OS=Staphylococcus aureus (st... [more]
SYV_STAA91.226e-2157.50Valyl-tRNA synthetase OS=Staphylococcus aureus (st... [more]
SYV_STAA81.226e-2157.50Valyl-tRNA synthetase OS=Staphylococcus aureus (st... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-877 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-17_G07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504388 ID=CF504388; Name=CF504388; organism=Citrus sinensis; type=EST; length=245bp
GTGGTATTCGTGGTGGGAGAACTCTGGATATTTCATTGCAGATAACAAGA
GCTCGAAGCCATCCTTTGTGATTGTTCTACCCCCACCAAATGTGACTGGT
GCCCTACATATAGGACATGCCCTCACAACAGCCATACAGGATACAATTAT
ACGTTGGAGGAGAATGTCTGGATATAATGCCTTGTGGGTACCTGGCATGG
ACCATGCTGGGATTGCAACACAGGTGGTTGTAGAGAAGAAGCTAA
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