CF504388

Overview
NameCF504388
Unique NameCF504388
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length245
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_DECAR (Valyl-tRNA synthetase OS=Dechloromonas aromatica (strain RCB) GN=valS PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.091e-21
Identity = 46/82 (56.10%), Postives = 56/82 (68.29%), Query Frame = 2
Query:    2 WYSWWENSGYFIADNKSSKP-SFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            WY  WE   YF A   +SK  +F I+LPPPNVTG LH+GH     I D + R+ RM G+N LW PG DHAGIATQ+VVE++L
Sbjct:   16 WYPEWETQNYFAAGVDASKADNFCILLPPPNVTGTLHMGHGFNQTIMDALTRYYRMRGHNTLWQPGTDHAGIATQIVVERQL 97          
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_CAUCR (Valyl-tRNA synthetase OS=Caulobacter crescentus GN=valS PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.091e-21
Identity = 47/80 (58.75%), Postives = 58/80 (72.50%), Query Frame = 2
Query:    5 YSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            Y+ WE SG F      +   FVIV+PPPNVTG+LHIGHAL   +QD + R+ RM G  ALW+PG DHAGIATQ+VVE++L
Sbjct:   16 YAAWEASGAFKPAEDPNAEPFVIVIPPPNVTGSLHIGHALNNTLQDVLTRFHRMRGKAALWLPGTDHAGIATQMVVERQL 95          
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_VIBPA (Valyl-tRNA synthetase OS=Vibrio parahaemolyticus GN=valS PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 2.731e-21
Identity = 45/80 (56.25%), Postives = 56/80 (70.00%), Query Frame = 2
Query:    5 YSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            Y  WE  GYF     ++K S+ I++PPPNVTG+LH+GHA    I DT+IR  RM G N LW  G DHAGIATQ+VVE+K+
Sbjct:   15 YQTWEEKGYFKPHGDTTKESYSIMIPPPNVTGSLHMGHAFQDTIMDTLIRCERMKGKNTLWQVGTDHAGIATQMVVERKI 94          
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_STACT (Valyl-tRNA synthetase OS=Staphylococcus carnosus (strain TM300) GN=valS PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 2.731e-21
Identity = 45/80 (56.25%), Postives = 55/80 (68.75%), Query Frame = 2
Query:    5 YSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            Y  W   GYF      SK ++ IV+PPPNVTG LH+GHA  T +QD + R +RM GY+ L++PGMDHAGIATQ  VE KL
Sbjct:   17 YQEWVEKGYFRPSGDKSKETYTIVIPPPNVTGKLHLGHAWDTTLQDILTRMKRMQGYDTLYLPGMDHAGIATQAKVEAKL 96          
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_LISMO (Valyl-tRNA synthetase OS=Listeria monocytogenes GN=valS PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 2.731e-21
Identity = 44/80 (55.00%), Postives = 56/80 (70.00%), Query Frame = 2
Query:    5 YSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            Y WW    +F A+  + K  + IV+PPPNVTG LH+GHA  T +QD I R +RM G++ L++PGMDHAGIATQ  VE KL
Sbjct:   24 YKWWLEKEFFKAEGNTDKEPYSIVIPPPNVTGKLHLGHAWDTTLQDIITRMKRMQGFDTLYLPGMDHAGIATQAKVEAKL 103          
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_LISMF (Valyl-tRNA synthetase OS=Listeria monocytogenes serotype 4b (strain F2365) GN=valS PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 2.731e-21
Identity = 44/80 (55.00%), Postives = 56/80 (70.00%), Query Frame = 2
Query:    5 YSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            Y WW    +F A+  + K  + IV+PPPNVTG LH+GHA  T +QD I R +RM G++ L++PGMDHAGIATQ  VE KL
Sbjct:   24 YKWWLEKEFFKAEGNTDKKPYSIVIPPPNVTGKLHLGHAWDTTLQDIITRMKRMQGFDTLYLPGMDHAGIATQAKVEAKL 103          
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_ACIAD (Valyl-tRNA synthetase OS=Acinetobacter sp. (strain ADP1) GN=valS PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 2.731e-21
Identity = 45/81 (55.56%), Postives = 55/81 (67.90%), Query Frame = 2
Query:    2 WYSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            WY  WE  GYF    +    SF I++PPPNVTG+LH+GH    AI D + R+ RM G N LW PG DHAGIATQ+VVE++L
Sbjct:   29 WYQIWEEKGYFKPSGQGD--SFCIMIPPPNVTGSLHMGHGFNNAIMDALTRYNRMMGKNTLWQPGTDHAGIATQMVVERQL 107          
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_ZYMMO (Valyl-tRNA synthetase OS=Zymomonas mobilis GN=valS PE=3 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 3.567e-21
Identity = 45/81 (55.56%), Postives = 58/81 (71.60%), Query Frame = 2
Query:    2 WYSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            WY+ WE  G F  +   + P F +V+PPPNVTG+LHIGHAL   +QD ++R  R+ G +ALWV G DHAGIATQ+VVE+ L
Sbjct:   16 WYTHWEEEGLFHPERPGADP-FTLVIPPPNVTGSLHIGHALDDTLQDILVRHARLKGKDALWVVGTDHAGIATQMVVERNL 95          
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_VIBF1 (Valyl-tRNA synthetase OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=valS PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 3.567e-21
Identity = 45/80 (56.25%), Postives = 56/80 (70.00%), Query Frame = 2
Query:    5 YSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            Y  WE  GYF     +SK ++ I++PPPNVTG+LH+GHA    I DT+IR  RM G N LW  G DHAGIATQ+VVE+K+
Sbjct:   15 YQTWEEKGYFKPHGDTSKEAYSIMIPPPNVTGSLHMGHAFQDTIMDTLIRAERMKGKNTLWQVGTDHAGIATQMVVERKI 94          
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_PSEF5 (Valyl-tRNA synthetase OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=valS PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 3.567e-21
Identity = 43/81 (53.09%), Postives = 56/81 (69.14%), Query Frame = 2
Query:    2 WYSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            WY  WE+  YF         S+ I++PPPNVTG+LH+GH    AI D +IR+RRM G N LW PG DHAGIATQ++VE+++
Sbjct:   14 WYQTWESENYFAPQGAGD--SYTIMIPPPNVTGSLHMGHGFNNAIMDALIRFRRMQGRNTLWQPGTDHAGIATQMLVERQI 92          
The following BLAST results are available for this feature:
BLAST of CF504388 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 294
Match NameE-valueIdentityDescription
SYV_DECAR2.091e-2156.10Valyl-tRNA synthetase OS=Dechloromonas aromatica (... [more]
SYV_CAUCR2.091e-2158.75Valyl-tRNA synthetase OS=Caulobacter crescentus GN... [more]
SYV_VIBPA2.731e-2156.25Valyl-tRNA synthetase OS=Vibrio parahaemolyticus G... [more]
SYV_STACT2.731e-2156.25Valyl-tRNA synthetase OS=Staphylococcus carnosus (... [more]
SYV_LISMO2.731e-2155.00Valyl-tRNA synthetase OS=Listeria monocytogenes GN... [more]
SYV_LISMF2.731e-2155.00Valyl-tRNA synthetase OS=Listeria monocytogenes se... [more]
SYV_ACIAD2.731e-2155.56Valyl-tRNA synthetase OS=Acinetobacter sp. (strain... [more]
SYV_ZYMMO3.567e-2155.56Valyl-tRNA synthetase OS=Zymomonas mobilis GN=valS... [more]
SYV_VIBF13.567e-2156.25Valyl-tRNA synthetase OS=Vibrio fischeri (strain A... [more]
SYV_PSEF53.567e-2153.09Valyl-tRNA synthetase OS=Pseudomonas fluorescens (... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-877 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-17_G07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504388 ID=CF504388; Name=CF504388; organism=Citrus sinensis; type=EST; length=245bp
GTGGTATTCGTGGTGGGAGAACTCTGGATATTTCATTGCAGATAACAAGA
GCTCGAAGCCATCCTTTGTGATTGTTCTACCCCCACCAAATGTGACTGGT
GCCCTACATATAGGACATGCCCTCACAACAGCCATACAGGATACAATTAT
ACGTTGGAGGAGAATGTCTGGATATAATGCCTTGTGGGTACCTGGCATGG
ACCATGCTGGGATTGCAACACAGGTGGTTGTAGAGAAGAAGCTAA
back to top