CF504388

Overview
NameCF504388
Unique NameCF504388
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length245
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_PHOPR (Valyl-tRNA synthetase OS=Photobacterium profundum GN=valS PE=3 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 3.567e-21
Identity = 45/80 (56.25%), Postives = 57/80 (71.25%), Query Frame = 2
Query:    5 YSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            Y  WE +GYF     +SK ++ I++PPPNVTG+LH+GHA    I DT+IR  RM G N LW  G DHAGIATQ+VVE+K+
Sbjct:   15 YQRWEEAGYFKPHGDTSKDAYSIMIPPPNVTGSLHMGHAFQDTIMDTLIRAERMKGKNTLWQVGTDHAGIATQMVVERKI 94          
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_BARQU (Valyl-tRNA synthetase OS=Bartonella quintana GN=valS PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 3.567e-21
Identity = 48/79 (60.76%), Postives = 57/79 (72.15%), Query Frame = 2
Query:   14 WENSGYFIADN--KSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            WE  G F A    KS    F ++LPPPNVTG+LH+GHAL T IQD ++R+ RM G N LW PGMDHAGIATQ VVE++L
Sbjct:   19 WEARGAFKAGMGAKSGTEPFCVMLPPPNVTGSLHMGHALNTTIQDIVVRFERMRGKNVLWQPGMDHAGIATQTVVERQL 97          
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_SHEON (Valyl-tRNA synthetase OS=Shewanella oneidensis GN=valS PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 4.659e-21
Identity = 44/80 (55.00%), Postives = 58/80 (72.50%), Query Frame = 2
Query:    5 YSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            Y  WE  GYF     +S+ ++ I++PPPNVTG+LH+GHA    I DT+IR++RM G N LW  G DHAGIATQ++VE+KL
Sbjct:   15 YQNWEEKGYFKPHGDASQGNYCIMIPPPNVTGSLHMGHAFQDTIMDTLIRYQRMKGKNTLWQVGTDHAGIATQMLVERKL 94          
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_BACSU (Valyl-tRNA synthetase OS=Bacillus subtilis GN=valS PE=1 SV=3)

HSP 1 Score: 99.7525 bits (247), Expect = 4.659e-21
Identity = 43/80 (53.75%), Postives = 56/80 (70.00%), Query Frame = 2
Query:    5 YSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            Y +W    +F A +  +K  + +V+PPPNVTG LH+GHA  T +QD + R +RM GY+ LW+PGMDHAGIATQ  VE KL
Sbjct:   22 YDFWLKGKFFEAGSDQTKEPYSVVIPPPNVTGRLHLGHAWDTTLQDIVTRMKRMQGYDVLWLPGMDHAGIATQAKVEAKL 101          
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_ALCBS (Valyl-tRNA synthetase OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=valS PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 4.659e-21
Identity = 45/81 (55.56%), Postives = 57/81 (70.37%), Query Frame = 2
Query:    2 WYSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            WY  WE +G+F    +     F I++PPPNVTG+LH+GHA    I DT++R+RRM G N LW  G DHAGIATQ+VVE+KL
Sbjct:   16 WYENWEQAGHFKPSGQGDP--FCIMIPPPNVTGSLHMGHAFQDTIMDTLVRYRRMQGRNTLWQVGTDHAGIATQMVVERKL 94          
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_PSEPK (Valyl-tRNA synthetase OS=Pseudomonas putida (strain KT2440) GN=valS PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 6.085e-21
Identity = 43/81 (53.09%), Postives = 57/81 (70.37%), Query Frame = 2
Query:    2 WYSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            WY+ WE+  YF         S+ I++PPPNVTG+LH+GH    AI D +IR+RRM G + LW PG DHAGIATQ++VE++L
Sbjct:   14 WYNTWESENYFAPQGAGE--SYTIMIPPPNVTGSLHMGHGFNNAIMDALIRFRRMQGRDTLWQPGTDHAGIATQMLVERQL 92          
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_NITMU (Valyl-tRNA synthetase OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=valS PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 7.947e-21
Identity = 45/85 (52.94%), Postives = 55/85 (64.71%), Query Frame = 2
Query:    2 WYSWWENSGYF----IADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            WYS WE  GYF            P++ I+LPPPNVTG LH+GHA    + D + R+ RM G N LW PG DHAGIATQ+VVE++L
Sbjct:   16 WYSRWEGEGYFRPGPAGTAGDQAPAYCIMLPPPNVTGTLHMGHAFQHTLMDALTRYHRMRGDNTLWQPGTDHAGIATQIVVERQL 100          
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_WOLSU (Valyl-tRNA synthetase OS=Wolinella succinogenes GN=valS PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.038e-20
Identity = 47/85 (55.29%), Postives = 59/85 (69.41%), Query Frame = 2
Query:    2 WYSWWENSGYFIADNKSS--KPS--FVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            +Y  WE  GYF  +  +   KP+  F ++LPPPNVTG+LHIGHAL   + D + R++RM GY  LW PG DHAGIATQ VVEK+L
Sbjct:   37 YYKIWETRGYFEVEGNAQIQKPNQNFAVMLPPPNVTGSLHIGHALNHTLIDIMTRYKRMDGYKTLWQPGTDHAGIATQNVVEKRL 121          
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_BRUME (Valyl-tRNA synthetase OS=Brucella melitensis GN=valS PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.038e-20
Identity = 47/80 (58.75%), Postives = 59/80 (73.75%), Query Frame = 2
Query:   14 WENSGYFIADNKSSKPS---FVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            WE +G F A    +KP    F +V+PPPNVTG+LH+GHAL   IQD ++R+ RM G N LW PGMDHAGIATQ+VVE++L
Sbjct:   19 WEEAGAFKA-GAGAKPGADPFAVVIPPPNVTGSLHMGHALNNTIQDIMVRFERMRGKNVLWQPGMDHAGIATQMVVERQL 97          
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_AZOSB (Valyl-tRNA synthetase OS=Azoarcus sp. (strain BH72) GN=valS PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.356e-20
Identity = 46/81 (56.79%), Postives = 56/81 (69.14%), Query Frame = 2
Query:    5 YSWWENSGYFIADNKSSKPS-FVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            Y  WE+ GYF A   +S P+ F I+LPPPNVTG LH+GH     I D + R+ RM G N LW PG DHAGIATQ+VVE++L
Sbjct:   17 YPEWESRGYFDAGLDTSNPNAFCILLPPPNVTGTLHMGHGFNQTIMDALTRYHRMRGDNTLWQPGTDHAGIATQIVVERQL 97          
The following BLAST results are available for this feature:
BLAST of CF504388 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 294
Match NameE-valueIdentityDescription
SYV_PHOPR3.567e-2156.25Valyl-tRNA synthetase OS=Photobacterium profundum ... [more]
SYV_BARQU3.567e-2160.76Valyl-tRNA synthetase OS=Bartonella quintana GN=va... [more]
SYV_SHEON4.659e-2155.00Valyl-tRNA synthetase OS=Shewanella oneidensis GN=... [more]
SYV_BACSU4.659e-2153.75Valyl-tRNA synthetase OS=Bacillus subtilis GN=valS... [more]
SYV_ALCBS4.659e-2155.56Valyl-tRNA synthetase OS=Alcanivorax borkumensis (... [more]
SYV_PSEPK6.085e-2153.09Valyl-tRNA synthetase OS=Pseudomonas putida (strai... [more]
SYV_NITMU7.947e-2152.94Valyl-tRNA synthetase OS=Nitrosospira multiformis ... [more]
SYV_WOLSU1.038e-2055.29Valyl-tRNA synthetase OS=Wolinella succinogenes GN... [more]
SYV_BRUME1.038e-2058.75Valyl-tRNA synthetase OS=Brucella melitensis GN=va... [more]
SYV_AZOSB1.356e-2056.79Valyl-tRNA synthetase OS=Azoarcus sp. (strain BH72... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-877 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-17_G07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504388 ID=CF504388; Name=CF504388; organism=Citrus sinensis; type=EST; length=245bp
GTGGTATTCGTGGTGGGAGAACTCTGGATATTTCATTGCAGATAACAAGA
GCTCGAAGCCATCCTTTGTGATTGTTCTACCCCCACCAAATGTGACTGGT
GCCCTACATATAGGACATGCCCTCACAACAGCCATACAGGATACAATTAT
ACGTTGGAGGAGAATGTCTGGATATAATGCCTTGTGGGTACCTGGCATGG
ACCATGCTGGGATTGCAACACAGGTGGTTGTAGAGAAGAAGCTAA
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