CF504388

Overview
NameCF504388
Unique NameCF504388
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length245
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYVM_MOUSE (Valyl-tRNA synthetase, mitochondrial OS=Mus musculus GN=Vars2 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 9.071e-25
Identity = 49/86 (56.98%), Postives = 61/86 (70.93%), Query Frame = 2
Query:    2 WYSWWENSGYFIADNKSSKP-----SFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            WY WW   G+F  + ++  P     +F + +PPPNVTG+LHIGHALT AIQD ++RW RM G   LW+PG DHAGIATQ VVEK+L
Sbjct:  113 WYQWWVREGFFKPEYQARLPQATGETFSMCIPPPNVTGSLHIGHALTVAIQDALVRWHRMRGDRVLWIPGSDHAGIATQAVVEKQL 198          
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYVM_MACMU (Valyl-tRNA synthetase, mitochondrial OS=Macaca mulatta GN=VARS2 PE=3 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 9.071e-25
Identity = 50/86 (58.14%), Postives = 61/86 (70.93%), Query Frame = 2
Query:    2 WYSWWENSGYFIADNKSSKP-----SFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            WY WW   G+F  + ++  P     +F + +PPPNVTG+LHIGHALT AIQD ++RW RM G   LWVPG DHAGIATQ VVEK+L
Sbjct:  113 WYPWWVREGFFKPEYQARLPQATGETFSMCIPPPNVTGSLHIGHALTVAIQDALVRWHRMRGDQVLWVPGSDHAGIATQAVVEKQL 198          
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYVM_HUMAN (Valyl-tRNA synthetase, mitochondrial OS=Homo sapiens GN=VARS2 PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 9.071e-25
Identity = 50/86 (58.14%), Postives = 61/86 (70.93%), Query Frame = 2
Query:    2 WYSWWENSGYFIADNKSSKP-----SFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            WY WW   G+F  + ++  P     +F + +PPPNVTG+LHIGHALT AIQD ++RW RM G   LWVPG DHAGIATQ VVEK+L
Sbjct:  113 WYPWWVREGFFKPEYQARLPQATGETFSMCIPPPNVTGSLHIGHALTVAIQDALVRWHRMRGDQVLWVPGSDHAGIATQAVVEKQL 198          
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_DEHSC (Valyl-tRNA synthetase OS=Dehalococcoides sp. (strain CBDB1) GN=valS PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.185e-24
Identity = 47/81 (58.02%), Postives = 59/81 (72.84%), Query Frame = 2
Query:    2 WYSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            WY +W    YF  +  S K  FVI++PPPNVTG LH+GHALT  ++D +IRW RM G   LW+PG+DHAGIA QVVVE++L
Sbjct:   23 WYQYWMEKSYFKPNPNSDKKPFVIIMPPPNVTGELHLGHALTATLEDIMIRWHRMQGEPTLWLPGVDHAGIAAQVVVEREL 103          
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYVM_RAT (Valyl-tRNA synthetase, mitochondrial OS=Rattus norvegicus GN=Vars2 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.547e-24
Identity = 49/86 (56.98%), Postives = 60/86 (69.77%), Query Frame = 2
Query:    2 WYSWWENSGYFIADNKSSKP-----SFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            WY WW   G+F  + ++  P     +F + +PPPNVTG+LHIGHALT AIQD  +RW RM G   LW+PG DHAGIATQ VVEK+L
Sbjct:  113 WYQWWVREGFFKPEYQARLPQATGETFSMCIPPPNVTGSLHIGHALTVAIQDAFVRWHRMRGDRVLWIPGSDHAGIATQAVVEKQL 198          
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYVC_RAT (Valyl-tRNA synthetase OS=Rattus norvegicus GN=Vars PE=2 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 2.639e-24
Identity = 51/88 (57.95%), Postives = 60/88 (68.18%), Query Frame = 2
Query:    2 WYSWWENSGYFIADNKSSKPS-------FVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            WY WWE  G+F  +      S       F++ +PPPNVTG+LH+GHALT AIQD++ RW RM G   LW PG DHAGIATQVVVEKKL
Sbjct:  309 WYPWWERQGFFKPEYGRPSVSAPNPRGVFMMCIPPPNVTGSLHLGHALTNAIQDSLTRWHRMRGETTLWNPGCDHAGIATQVVVEKKL 396          
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYVC_MOUSE (Valyl-tRNA synthetase OS=Mus musculus GN=Vars PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 2.639e-24
Identity = 51/88 (57.95%), Postives = 60/88 (68.18%), Query Frame = 2
Query:    2 WYSWWENSGYFIADNKSSKPS-------FVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            WY WWE  G+F  +      S       F++ +PPPNVTG+LH+GHALT AIQD++ RW RM G   LW PG DHAGIATQVVVEKKL
Sbjct:  308 WYPWWERQGFFKPEYGRPSVSAPNPRGVFMMCIPPPNVTGSLHLGHALTNAIQDSLTRWHRMRGETTLWNPGCDHAGIATQVVVEKKL 395          
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYVC_HUMAN (Valyl-tRNA synthetase OS=Homo sapiens GN=VARS PE=1 SV=4)

HSP 1 Score: 110.538 bits (275), Expect = 2.639e-24
Identity = 51/88 (57.95%), Postives = 60/88 (68.18%), Query Frame = 2
Query:    2 WYSWWENSGYFIADNKSSKPS-------FVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            WY WWE  G+F  +      S       F++ +PPPNVTG+LH+GHALT AIQD++ RW RM G   LW PG DHAGIATQVVVEKKL
Sbjct:  309 WYPWWEQQGFFKPEYGRPNVSAANPRGVFMMCIPPPNVTGSLHLGHALTNAIQDSLTRWHRMRGETTLWNPGCDHAGIATQVVVEKKL 396          
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_THIDA (Valyl-tRNA synthetase OS=Thiobacillus denitrificans (strain ATCC 25259) GN=valS PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 3.447e-24
Identity = 47/81 (58.02%), Postives = 61/81 (75.31%), Query Frame = 2
Query:    2 WYSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            WY+ WE++GYF A +K   P++ I+LPPPNVTG LH+GHA    + D + R+ RMSG N LW PG DHAGIATQ+VVE++L
Sbjct:   16 WYARWESAGYFKARDKPDAPAYCIMLPPPNVTGTLHMGHAFQHTLMDALTRYHRMSGDNTLWQPGTDHAGIATQIVVERQL 96          
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYVC_DICDI (Probable valyl-tRNA synthetase, cytoplasmic OS=Dictyostelium discoideum GN=valS1 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 3.447e-24
Identity = 50/88 (56.82%), Postives = 63/88 (71.59%), Query Frame = 2
Query:    2 WYSWWENSGYFIADNKSS-------KPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            WY +W ++GYF  + +            FVIV+PPPNVTG+LH+GHALT +IQD ++R+ RM G   LWVPG DHAGIATQVVVEKK+
Sbjct:  116 WYDYWLDNGYFSPEKQMEIQPHVVKDKKFVIVIPPPNVTGSLHLGHALTNSIQDAVVRYHRMKGEVCLWVPGTDHAGIATQVVVEKKI 203          
The following BLAST results are available for this feature:
BLAST of CF504388 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 294
Match NameE-valueIdentityDescription
SYVM_MOUSE9.071e-2556.98Valyl-tRNA synthetase, mitochondrial OS=Mus muscul... [more]
SYVM_MACMU9.071e-2558.14Valyl-tRNA synthetase, mitochondrial OS=Macaca mul... [more]
SYVM_HUMAN9.071e-2558.14Valyl-tRNA synthetase, mitochondrial OS=Homo sapie... [more]
SYV_DEHSC1.185e-2458.02Valyl-tRNA synthetase OS=Dehalococcoides sp. (stra... [more]
SYVM_RAT1.547e-2456.98Valyl-tRNA synthetase, mitochondrial OS=Rattus nor... [more]
SYVC_RAT2.639e-2457.95Valyl-tRNA synthetase OS=Rattus norvegicus GN=Vars... [more]
SYVC_MOUSE2.639e-2457.95Valyl-tRNA synthetase OS=Mus musculus GN=Vars PE=2... [more]
SYVC_HUMAN2.639e-2457.95Valyl-tRNA synthetase OS=Homo sapiens GN=VARS PE=1... [more]
SYV_THIDA3.447e-2458.02Valyl-tRNA synthetase OS=Thiobacillus denitrifican... [more]
SYVC_DICDI3.447e-2456.82Probable valyl-tRNA synthetase, cytoplasmic OS=Dic... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-877 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-17_G07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504388 ID=CF504388; Name=CF504388; organism=Citrus sinensis; type=EST; length=245bp
GTGGTATTCGTGGTGGGAGAACTCTGGATATTTCATTGCAGATAACAAGA
GCTCGAAGCCATCCTTTGTGATTGTTCTACCCCCACCAAATGTGACTGGT
GCCCTACATATAGGACATGCCCTCACAACAGCCATACAGGATACAATTAT
ACGTTGGAGGAGAATGTCTGGATATAATGCCTTGTGGGTACCTGGCATGG
ACCATGCTGGGATTGCAACACAGGTGGTTGTAGAGAAGAAGCTAA
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