CF504388

Overview
NameCF504388
Unique NameCF504388
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length245
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_MYCPU (Valyl-tRNA synthetase OS=Mycoplasma pulmonis GN=valS PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.339e-19
Identity = 42/77 (54.55%), Postives = 58/77 (75.32%), Query Frame = 2
Query:   14 WENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            W +  YFI  +   KP F I+LPPPNVTG LH+GHAL   +QD++IR++++ GY+ L++P MDHAGIATQ+ VE+ L
Sbjct:   18 WIDKKYFINHDLDKKP-FSIILPPPNVTGQLHLGHALNGYLQDSVIRYKKLEGYDVLFLPAMDHAGIATQIKVEESL 93          
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_IDILO (Valyl-tRNA synthetase OS=Idiomarina loihiensis GN=valS PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.339e-19
Identity = 44/80 (55.00%), Postives = 55/80 (68.75%), Query Frame = 2
Query:    5 YSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            Y  WE+ GYF    K    S  I++PPPNVTG+LH+GHA    I DT+ R++RM G N LW  G DHAGIATQ+VVE++L
Sbjct:   15 YQQWEDKGYFKPSGKGDPYS--IMIPPPNVTGSLHMGHAFQHTIMDTLTRYQRMDGLNTLWQVGSDHAGIATQMVVERQL 92          
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_LACSS (Valyl-tRNA synthetase OS=Lactobacillus sakei subsp. sakei (strain 23K) GN=valS PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.361e-19
Identity = 43/67 (64.18%), Postives = 52/67 (77.61%), Query Frame = 2
Query:   44 NKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            N  +KP + IV+PPPNVTG LH+GHA  T +QD +IR +RM GY+ LW+PGMDHAGIATQ  VE KL
Sbjct:   35 NPDAKP-YSIVIPPPNVTGKLHLGHAWDTTLQDMLIRQKRMQGYDVLWLPGMDHAGIATQAKVEAKL 100          
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_SYNY3 (Valyl-tRNA synthetase OS=Synechocystis sp. (strain PCC 6803) GN=valS PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.695e-19
Identity = 39/81 (48.15%), Postives = 56/81 (69.14%), Query Frame = 2
Query:    2 WYSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            W + WE S  F AD       + +V+PPPNVTG+LH+GHA  +++ DT++R+ RM G N LW+PG DHA IA Q ++E++L
Sbjct:   18 WQTAWEESHAFKADPDRPGEPYCVVIPPPNVTGSLHMGHAFESSLIDTLVRYHRMRGDNTLWLPGTDHASIAVQTILERQL 98          
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_PROMT (Valyl-tRNA synthetase OS=Prochlorococcus marinus (strain NATL2A) GN=valS PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.695e-19
Identity = 39/81 (48.15%), Postives = 55/81 (67.90%), Query Frame = 2
Query:    2 WYSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            W   WE  G F  D  +    F +V+PPPNVTG+LH+GHA  TA+ DT++R++R+ G N L +PG DHA IA Q ++E++L
Sbjct:   29 WQKAWEEKGAFKPDPSAPGDPFSVVIPPPNVTGSLHMGHAFNTALIDTVVRYKRLKGNNVLCLPGTDHASIAVQTILERQL 109          
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_LACCA (Valyl-tRNA synthetase OS=Lactobacillus casei GN=valS PE=3 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 5.695e-19
Identity = 42/81 (51.85%), Postives = 58/81 (71.60%), Query Frame = 2
Query:    2 WYSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            +  W +   +  + +K +KP + IV+PPPNVTG LH+GHA  T +QD +IR +R+ G++ LW+PGMDHAGIATQ  VE KL
Sbjct:   23 YQEWLDEDVFKPSGDKKAKP-YSIVIPPPNVTGKLHMGHAWDTTLQDIVIRQKRIEGFDTLWLPGMDHAGIATQAKVEAKL 102          
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_GRAFK (Valyl-tRNA synthetase OS=Gramella forsetii (strain KT0803) GN=valS PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.695e-19
Identity = 41/81 (50.62%), Postives = 53/81 (65.43%), Query Frame = 2
Query:    2 WYSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            WY +W  + YF ++    +P + IV+PPPNVTG LH+GH L   IQD ++R  R+ G NA WVPG DHA IAT+  V  KL
Sbjct:   16 WYDYWMKNNYFHSEVDDREP-YTIVIPPPNVTGVLHMGHMLNNTIQDVLVRRARLKGLNACWVPGTDHASIATEAKVVAKL 95          
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_BUCAI (Valyl-tRNA synthetase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=valS PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.695e-19
Identity = 40/80 (50.00%), Postives = 56/80 (70.00%), Query Frame = 2
Query:    5 YSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            Y +WE +G+F   N   K +F I++PPPN+TG+LH+GHA    I D +IR+ RM G N  W  G DHAGIATQ++VE+++
Sbjct:   15 YFFWEKNGFF-KPNHLEKSTFCIMMPPPNITGSLHMGHAFQQTIMDILIRYHRMQGKNTFWQVGTDHAGIATQILVERQI 93          
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_XANC5 (Valyl-tRNA synthetase OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=valS PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.438e-19
Identity = 39/80 (48.75%), Postives = 54/80 (67.50%), Query Frame = 2
Query:    5 YSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            Y+ WE +GYF+   K     + ++LPPPNVTG LH+GHA    + D ++R+ RM GY+ LW  G DHAGIAT++VV + L
Sbjct:   18 YAQWEAAGYFVPSGKGEP--YTVLLPPPNVTGTLHMGHAFQQTLMDALVRYHRMRGYDTLWQVGTDHAGIATEMVVSRNL 95          
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_XANAC (Valyl-tRNA synthetase OS=Xanthomonas axonopodis pv. citri GN=valS PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.438e-19
Identity = 39/80 (48.75%), Postives = 54/80 (67.50%), Query Frame = 2
Query:    5 YSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            Y+ WE +GYF+   K     + ++LPPPNVTG LH+GHA    + D ++R+ RM GY+ LW  G DHAGIAT++VV + L
Sbjct:   18 YAQWEAAGYFVPSGKGEP--YTVLLPPPNVTGTLHMGHAFQQTLMDALVRYHRMRGYDTLWQVGTDHAGIATEMVVSRNL 95          
The following BLAST results are available for this feature:
BLAST of CF504388 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 294
Match NameE-valueIdentityDescription
SYV_MYCPU3.339e-1954.55Valyl-tRNA synthetase OS=Mycoplasma pulmonis GN=va... [more]
SYV_IDILO3.339e-1955.00Valyl-tRNA synthetase OS=Idiomarina loihiensis GN=... [more]
SYV_LACSS4.361e-1964.18Valyl-tRNA synthetase OS=Lactobacillus sakei subsp... [more]
SYV_SYNY35.695e-1948.15Valyl-tRNA synthetase OS=Synechocystis sp. (strain... [more]
SYV_PROMT5.695e-1948.15Valyl-tRNA synthetase OS=Prochlorococcus marinus (... [more]
SYV_LACCA5.695e-1951.85Valyl-tRNA synthetase OS=Lactobacillus casei GN=va... [more]
SYV_GRAFK5.695e-1950.62Valyl-tRNA synthetase OS=Gramella forsetii (strain... [more]
SYV_BUCAI5.695e-1950.00Valyl-tRNA synthetase OS=Buchnera aphidicola subsp... [more]
SYV_XANC57.438e-1948.75Valyl-tRNA synthetase OS=Xanthomonas campestris pv... [more]
SYV_XANAC7.438e-1948.75Valyl-tRNA synthetase OS=Xanthomonas axonopodis pv... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-877 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-17_G07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504388 ID=CF504388; Name=CF504388; organism=Citrus sinensis; type=EST; length=245bp
GTGGTATTCGTGGTGGGAGAACTCTGGATATTTCATTGCAGATAACAAGA
GCTCGAAGCCATCCTTTGTGATTGTTCTACCCCCACCAAATGTGACTGGT
GCCCTACATATAGGACATGCCCTCACAACAGCCATACAGGATACAATTAT
ACGTTGGAGGAGAATGTCTGGATATAATGCCTTGTGGGTACCTGGCATGG
ACCATGCTGGGATTGCAACACAGGTGGTTGTAGAGAAGAAGCTAA
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