CF504388

Overview
NameCF504388
Unique NameCF504388
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length245
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_XANOR (Valyl-tRNA synthetase OS=Xanthomonas oryzae pv. oryzae GN=valS PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.826e-18
Identity = 38/80 (47.50%), Postives = 54/80 (67.50%), Query Frame = 2
Query:    5 YSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            Y+ WE +GYF+  +      + ++LPPPNVTG LH+GHA    + D ++R+ RM GY+ LW  G DHAGIAT++VV + L
Sbjct:   18 YAQWEAAGYFVPSDTGEP--YTVLLPPPNVTGTLHMGHAFQQTLMDALVRYHRMRGYDTLWQVGTDHAGIATEMVVSRNL 95          
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_XANOP (Valyl-tRNA synthetase OS=Xanthomonas oryzae pv. oryzae (strain PXO99A) GN=valS PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.826e-18
Identity = 38/80 (47.50%), Postives = 54/80 (67.50%), Query Frame = 2
Query:    5 YSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            Y+ WE +GYF+  +      + ++LPPPNVTG LH+GHA    + D ++R+ RM GY+ LW  G DHAGIAT++VV + L
Sbjct:   18 YAQWEAAGYFVPSDTGEP--YTVLLPPPNVTGTLHMGHAFQQTLMDALVRYHRMRGYDTLWQVGTDHAGIATEMVVSRNL 95          
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_XANOM (Valyl-tRNA synthetase OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) GN=valS PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.826e-18
Identity = 38/80 (47.50%), Postives = 54/80 (67.50%), Query Frame = 2
Query:    5 YSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            Y+ WE +GYF+  +      + ++LPPPNVTG LH+GHA    + D ++R+ RM GY+ LW  G DHAGIAT++VV + L
Sbjct:   18 YAQWEAAGYFVPSDTGEP--YTVLLPPPNVTGTLHMGHAFQQTLMDALVRYHRMRGYDTLWQVGTDHAGIATEMVVSRNL 95          
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_STRMU (Valyl-tRNA synthetase OS=Streptococcus mutans GN=valS PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.826e-18
Identity = 41/80 (51.25%), Postives = 52/80 (65.00%), Query Frame = 2
Query:    5 YSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            Y  W ++  F          + IV+PPPNVTG LH+GHA  T + D IIR +RM G++ LW+PGMDHAGIATQ  VE +L
Sbjct:   19 YQKWLDADVFKPSGDQKAKPYSIVIPPPNVTGKLHLGHAWDTTLPDIIIRQKRMQGFDTLWLPGMDHAGIATQAKVEARL 98          
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_HELHP (Valyl-tRNA synthetase OS=Helicobacter hepaticus GN=valS PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.826e-18
Identity = 48/87 (55.17%), Postives = 60/87 (68.97%), Query Frame = 2
Query:    2 WYSWWENSGYF-IADNKS-----SKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            +Y+  E  GYF I  NKS     +   F I++PPPNVTG LHIGHALT  +QD I R++RM G+  L+ PG+DHAGIATQ VV K+L
Sbjct:   24 FYAICEKRGYFEIEGNKSLWQGCAPKCFSIMMPPPNVTGVLHIGHALTFTLQDIITRFKRMEGFKTLYQPGLDHAGIATQNVVLKQL 110          
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_BORPE (Valyl-tRNA synthetase OS=Bordetella pertussis GN=valS PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.826e-18
Identity = 42/85 (49.41%), Postives = 55/85 (64.71%), Query Frame = 2
Query:    2 WYSWWENSGYFIA----DNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            WY  W   GYF A    +  +    +VI  PPPNVTG LH+GHA    I D ++R+ RM G + ++VPG DHAGIATQ+VVE++L
Sbjct:   29 WYDEWAKRGYFDAGRHVETGTDPQPYVIQFPPPNVTGTLHMGHAFNQTIMDGLVRYHRMLGDDTVFVPGTDHAGIATQIVVERQL 113          
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_BORPA (Valyl-tRNA synthetase OS=Bordetella parapertussis GN=valS PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.826e-18
Identity = 42/85 (49.41%), Postives = 55/85 (64.71%), Query Frame = 2
Query:    2 WYSWWENSGYFIA----DNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            WY  W   GYF A    +  +    +VI  PPPNVTG LH+GHA    I D ++R+ RM G + ++VPG DHAGIATQ+VVE++L
Sbjct:   29 WYDEWAKRGYFDAGRHVETGTDPQPYVIQFPPPNVTGTLHMGHAFNQTIMDGLVRYHRMLGDDTVFVPGTDHAGIATQIVVERQL 113          
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_BORBR (Valyl-tRNA synthetase OS=Bordetella bronchiseptica GN=valS PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.826e-18
Identity = 42/85 (49.41%), Postives = 55/85 (64.71%), Query Frame = 2
Query:    2 WYSWWENSGYFIA----DNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            WY  W   GYF A    +  +    +VI  PPPNVTG LH+GHA    I D ++R+ RM G + ++VPG DHAGIATQ+VVE++L
Sbjct:   29 WYDEWAKRGYFDAGRHVETGTDPQPYVIQFPPPNVTGTLHMGHAFNQTIMDGLVRYHRMLGDDTVFVPGTDHAGIATQIVVERQL 113          
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_MYCHJ (Valyl-tRNA synthetase OS=Mycoplasma hyopneumoniae (strain J / ATCC 25934 / NCTC 10110) GN=valS PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.691e-18
Identity = 39/77 (50.65%), Postives = 57/77 (74.03%), Query Frame = 2
Query:   14 WENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            W+  G+FIA  ++ KP F I+ PPPNVTG LH+GH+    IQD+++R+ ++ G++ L +P +DHAGIATQV VE+ L
Sbjct:   18 WQKKGFFIAPKQTKKP-FSIISPPPNVTGQLHLGHSWNAFIQDSLVRYHKLQGFDVLLLPSVDHAGIATQVKVEEDL 93          
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_MYCH7 (Valyl-tRNA synthetase OS=Mycoplasma hyopneumoniae (strain 7448) GN=valS PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.691e-18
Identity = 39/77 (50.65%), Postives = 57/77 (74.03%), Query Frame = 2
Query:   14 WENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            W+  G+FIA  ++ KP F I+ PPPNVTG LH+GH+    IQD+++R+ ++ G++ L +P +DHAGIATQV VE+ L
Sbjct:   18 WQKKGFFIAPKQTKKP-FSIISPPPNVTGQLHLGHSWNAFIQDSLVRYHKLQGFDVLLLPSVDHAGIATQVKVEEDL 93          
The following BLAST results are available for this feature:
BLAST of CF504388 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 294
Match NameE-valueIdentityDescription
SYV_XANOR2.826e-1847.50Valyl-tRNA synthetase OS=Xanthomonas oryzae pv. or... [more]
SYV_XANOP2.826e-1847.50Valyl-tRNA synthetase OS=Xanthomonas oryzae pv. or... [more]
SYV_XANOM2.826e-1847.50Valyl-tRNA synthetase OS=Xanthomonas oryzae pv. or... [more]
SYV_STRMU2.826e-1851.25Valyl-tRNA synthetase OS=Streptococcus mutans GN=v... [more]
SYV_HELHP2.826e-1855.17Valyl-tRNA synthetase OS=Helicobacter hepaticus GN... [more]
SYV_BORPE2.826e-1849.41Valyl-tRNA synthetase OS=Bordetella pertussis GN=v... [more]
SYV_BORPA2.826e-1849.41Valyl-tRNA synthetase OS=Bordetella parapertussis ... [more]
SYV_BORBR2.826e-1849.41Valyl-tRNA synthetase OS=Bordetella bronchiseptica... [more]
SYV_MYCHJ3.691e-1850.65Valyl-tRNA synthetase OS=Mycoplasma hyopneumoniae ... [more]
SYV_MYCH73.691e-1850.65Valyl-tRNA synthetase OS=Mycoplasma hyopneumoniae ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-877 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-17_G07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504388 ID=CF504388; Name=CF504388; organism=Citrus sinensis; type=EST; length=245bp
GTGGTATTCGTGGTGGGAGAACTCTGGATATTTCATTGCAGATAACAAGA
GCTCGAAGCCATCCTTTGTGATTGTTCTACCCCCACCAAATGTGACTGGT
GCCCTACATATAGGACATGCCCTCACAACAGCCATACAGGATACAATTAT
ACGTTGGAGGAGAATGTCTGGATATAATGCCTTGTGGGTACCTGGCATGG
ACCATGCTGGGATTGCAACACAGGTGGTTGTAGAGAAGAAGCTAA
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