CF504388

Overview
NameCF504388
Unique NameCF504388
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length245
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_UREPA (Valyl-tRNA synthetase OS=Ureaplasma parvum GN=valS PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.403e-17
Identity = 39/78 (50.00%), Postives = 53/78 (67.95%), Query Frame = 2
Query:   11 WWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            +W+ +  F A   S+K  F IVLPPPNVTG LHIGHA    + D ++R++++ GY++  +PG DHAGIATQ   EK L
Sbjct:   21 FWQENNLFKAQINSTKKPFTIVLPPPNVTGHLHIGHAYDFTLSDILMRYKKLKGYDSFIIPGTDHAGIATQTKFEKNL 98          
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_RHOPA (Valyl-tRNA synthetase OS=Rhodopseudomonas palustris GN=valS PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.403e-17
Identity = 41/79 (51.90%), Postives = 56/79 (70.89%), Query Frame = 2
Query:   14 WENSGYFIADNKSSKPS--FVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            WE++  F A     + +  + IV+PPPNVTG+LH+GHAL   +QD + R+ RM G + LW PG DHAGIATQ+VVE++L
Sbjct:   19 WEDAEAFKAGRPERRDAVPYSIVIPPPNVTGSLHMGHALNNTLQDILCRFERMRGRDVLWQPGTDHAGIATQMVVERQL 97          
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_BACTN (Valyl-tRNA synthetase OS=Bacteroides thetaiotaomicron GN=valS PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.403e-17
Identity = 41/81 (50.62%), Postives = 50/81 (61.73%), Query Frame = 2
Query:    2 WYSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            WY +W     F +     +P + IV+PPPNVTG LH+GH L   IQD ++R  RM G NA WVPG DHA IAT+  V  KL
Sbjct:   16 WYQYWLEHRLFSSKPDGREP-YTIVIPPPNVTGVLHMGHMLNNTIQDILVRRARMEGKNACWVPGTDHASIATEAKVVNKL 95          
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_DESVH (Valyl-tRNA synthetase OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=valS PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.832e-17
Identity = 42/81 (51.85%), Postives = 51/81 (62.96%), Query Frame = 2
Query:    2 WYSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            W   WE++  F  D  +    + IV+PPPNVTGALHIGHAL   + D + R  R  G   LW+PG DHAGIATQ VVE+ L
Sbjct:   19 WRRHWEDNRTFTPDMDAPGEPYSIVIPPPNVTGALHIGHALNHVLIDVLCRNARQQGKKVLWLPGTDHAGIATQNVVERAL 99          
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_BORBU (Valyl-tRNA synthetase OS=Borrelia burgdorferi GN=valS PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.832e-17
Identity = 41/80 (51.25%), Postives = 54/80 (67.50%), Query Frame = 2
Query:    5 YSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            Y+ W  +  F+ DN S    F +V PPPNVTG LH+GHAL   +QD ++R++RM  +N LW+ G DHAGIATQ V E+ L
Sbjct:   19 YTKWLKNNVFLPDN-SLFEKFSMVAPPPNVTGVLHMGHALNFVLQDVLVRYKRMKRHNTLWLFGTDHAGIATQAVFERHL 97          
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_STRMK (Valyl-tRNA synthetase OS=Stenotrophomonas maltophilia (strain K279a) GN=valS PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.081e-17
Identity = 41/85 (48.24%), Postives = 54/85 (63.53%), Query Frame = 2
Query:    5 YSWWENSGYFIADNKSSKPS-----FVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            Y  WE +G+F       KPS     + I+LPPPNVTG LH+GHA    + D ++R+ RM GY+ LW  G DHAGIAT++VV + L
Sbjct:   18 YEAWEKAGHF-------KPSGTGEPYTILLPPPNVTGTLHMGHAFQQTLMDALVRYHRMRGYDTLWQVGTDHAGIATEMVVSRNL 95          
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_STRM5 (Valyl-tRNA synthetase OS=Stenotrophomonas maltophilia (strain R551-3) GN=valS PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.081e-17
Identity = 41/85 (48.24%), Postives = 54/85 (63.53%), Query Frame = 2
Query:    5 YSWWENSGYFIADNKSSKPS-----FVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            Y  WE +G+F       KPS     + I+LPPPNVTG LH+GHA    + D ++R+ RM GY+ LW  G DHAGIAT++VV + L
Sbjct:   18 YEAWEKAGHF-------KPSGTGEPYTILLPPPNVTGTLHMGHAFQQTLMDALVRYHRMRGYDTLWQVGTDHAGIATEMVVSRNL 95          
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_PROMP (Valyl-tRNA synthetase OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=valS PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.330e-17
Identity = 39/81 (48.15%), Postives = 54/81 (66.67%), Query Frame = 2
Query:    2 WYSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            W   W++   F  +   +   F IV+PPPNVTG+LH+GHA  TA+ D IIR++R+ G N L +PG DHA IA Q ++EK+L
Sbjct:   22 WQKRWDSLRAFSPNPSDNGDPFCIVIPPPNVTGSLHMGHAFNTALIDVIIRFQRLLGKNVLCLPGTDHASIAVQTILEKQL 102          
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_MYCPN (Valyl-tRNA synthetase OS=Mycoplasma pneumoniae GN=valS PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.330e-17
Identity = 38/78 (48.72%), Postives = 51/78 (65.38%), Query Frame = 2
Query:    5 YSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEK 238
            Y  W ++ +F    + +K  F  +LPPPN+TG LHIGHA   +I D I+R++R+ GY   W+PG DHAGIATQ   EK
Sbjct:   21 YDSWSSASFF--KPQKNKVPFTAILPPPNLTGTLHIGHAFEVSITDQIMRFKRLRGYGVNWIPGFDHAGIATQTKYEK 96          
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_BORGA (Valyl-tRNA synthetase OS=Borrelia garinii GN=valS PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 6.962e-17
Identity = 40/80 (50.00%), Postives = 54/80 (67.50%), Query Frame = 2
Query:    5 YSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            Y+ W  +  F+ +N S    F +V PPPNVTG LH+GHAL   +QD ++R++RM  +N LW+ G DHAGIATQ V E+ L
Sbjct:   19 YNKWLKNNVFLPNN-SLFEKFSMVAPPPNVTGVLHMGHALNFVLQDILVRYKRMKKHNTLWLFGTDHAGIATQTVFERNL 97          
The following BLAST results are available for this feature:
BLAST of CF504388 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 294
Match NameE-valueIdentityDescription
SYV_UREPA1.403e-1750.00Valyl-tRNA synthetase OS=Ureaplasma parvum GN=valS... [more]
SYV_RHOPA1.403e-1751.90Valyl-tRNA synthetase OS=Rhodopseudomonas palustri... [more]
SYV_BACTN1.403e-1750.62Valyl-tRNA synthetase OS=Bacteroides thetaiotaomic... [more]
SYV_DESVH1.832e-1751.85Valyl-tRNA synthetase OS=Desulfovibrio vulgaris (s... [more]
SYV_BORBU1.832e-1751.25Valyl-tRNA synthetase OS=Borrelia burgdorferi GN=v... [more]
SYV_STRMK4.081e-1748.24Valyl-tRNA synthetase OS=Stenotrophomonas maltophi... [more]
SYV_STRM54.081e-1748.24Valyl-tRNA synthetase OS=Stenotrophomonas maltophi... [more]
SYV_PROMP5.330e-1748.15Valyl-tRNA synthetase OS=Prochlorococcus marinus s... [more]
SYV_MYCPN5.330e-1748.72Valyl-tRNA synthetase OS=Mycoplasma pneumoniae GN=... [more]
SYV_BORGA6.962e-1750.00Valyl-tRNA synthetase OS=Borrelia garinii GN=valS ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-877 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-17_G07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504388 ID=CF504388; Name=CF504388; organism=Citrus sinensis; type=EST; length=245bp
GTGGTATTCGTGGTGGGAGAACTCTGGATATTTCATTGCAGATAACAAGA
GCTCGAAGCCATCCTTTGTGATTGTTCTACCCCCACCAAATGTGACTGGT
GCCCTACATATAGGACATGCCCTCACAACAGCCATACAGGATACAATTAT
ACGTTGGAGGAGAATGTCTGGATATAATGCCTTGTGGGTACCTGGCATGG
ACCATGCTGGGATTGCAACACAGGTGGTTGTAGAGAAGAAGCTAA
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