CF504388

Overview
NameCF504388
Unique NameCF504388
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length245
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYI_BORPD (Isoleucyl-tRNA synthetase OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) GN=ileS PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.455e-11
Identity = 31/82 (37.80%), Postives = 50/82 (60.98%), Query Frame = 2
Query:    2 WYSWWENSGYFIADNKSSK--PSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKK 241
            W + WE +  + A   +S+  P FV+   PP   G +HIGHA+   ++D I++ R M+GY+A +VPG D  G+  ++ +EKK
Sbjct:   27 WVAQWEENHVYQAIRAASRGRPRFVLHDGPPYANGDIHIGHAVNKVLKDIIVKSRNMAGYDAHYVPGWDCHGMPIEIQIEKK 108          
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_SULSO (Valyl-tRNA synthetase OS=Sulfolobus solfataricus GN=valS PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.737e-11
Identity = 34/86 (39.53%), Postives = 45/86 (52.33%), Query Frame = 2
Query:    2 WYSWWENSGYF-----IADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            W   W +  Y+       D     P FVI  PPP  +G LH+GHA    I DTI R++R+ GYN L   G D  G+ T++ V+ KL
Sbjct:   53 WQKIWLSEEYWRDVFRFRDEDDKAPRFVIDTPPPFTSGELHMGHAYWVTIADTIGRFKRLEGYNVLLPQGWDTQGLPTELKVQYKL 138          
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYI_STRMK (Isoleucyl-tRNA synthetase OS=Stenotrophomonas maltophilia (strain K279a) GN=ileS PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.737e-11
Identity = 29/78 (37.18%), Postives = 49/78 (62.82%), Query Frame = 2
Query:   14 WENSGYF--IADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKK 241
            WE  G +  + DN + +P FV+   PP   G +H+GHA+   ++D I++ R ++G++A +VPG D  G+  ++ VEKK
Sbjct:   33 WEAQGLYQQLRDNAAGRPLFVLHDGPPYANGRIHLGHAVNKILKDIIVKSRYLAGFDAPYVPGWDCHGLPIEIAVEKK 110          
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYI_BORA1 (Isoleucyl-tRNA synthetase OS=Bordetella avium (strain 197N) GN=ileS PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.737e-11
Identity = 32/82 (39.02%), Postives = 49/82 (59.76%), Query Frame = 2
Query:    2 WYSWWENSGYFIADNKSSK--PSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKK 241
            W   WE +  + A   +SK  P F++   PP   G +HIGHA+   ++D I++ R M+GY+A +VPG D  G+  ++ VEKK
Sbjct:   27 WVQQWEENRVYQAIRAASKGRPLFILHDGPPYANGDIHIGHAVNKILKDIIVKSRSMAGYDAPYVPGWDCHGMPIEIQVEKK 108          
The following BLAST results are available for this feature:
BLAST of CF504388 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 294
Match NameE-valueIdentityDescription
SYI_BORPD7.455e-1137.80Isoleucyl-tRNA synthetase OS=Bordetella petrii (st... [more]
SYV_SULSO9.737e-1139.53Valyl-tRNA synthetase OS=Sulfolobus solfataricus G... [more]
SYI_STRMK9.737e-1137.18Isoleucyl-tRNA synthetase OS=Stenotrophomonas malt... [more]
SYI_BORA19.737e-1139.02Isoleucyl-tRNA synthetase OS=Bordetella avium (str... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-877 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-17_G07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504388 ID=CF504388; Name=CF504388; organism=Citrus sinensis; type=EST; length=245bp
GTGGTATTCGTGGTGGGAGAACTCTGGATATTTCATTGCAGATAACAAGA
GCTCGAAGCCATCCTTTGTGATTGTTCTACCCCCACCAAATGTGACTGGT
GCCCTACATATAGGACATGCCCTCACAACAGCCATACAGGATACAATTAT
ACGTTGGAGGAGAATGTCTGGATATAATGCCTTGTGGGTACCTGGCATGG
ACCATGCTGGGATTGCAACACAGGTGGTTGTAGAGAAGAAGCTAA
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