CF504388

Overview
NameCF504388
Unique NameCF504388
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length245
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_GRABC (Valyl-tRNA synthetase OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GN=valS PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 4.502e-24
Identity = 48/80 (60.00%), Postives = 62/80 (77.50%), Query Frame = 2
Query:    5 YSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            Y+ WE+ G F A+  SS   F I++PPPNVTG+LH+GHALT  +QD+++RWRRM G + LW PG DHAGIATQ+VVE+ L
Sbjct:   21 YAGWEHGGAFAANPASSATPFTIMIPPPNVTGSLHMGHALTFTLQDSLVRWRRMQGRDVLWQPGTDHAGIATQMVVERLL 100          
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_CHLAB (Valyl-tRNA synthetase OS=Chlamydophila abortus GN=valS PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 5.880e-24
Identity = 47/80 (58.75%), Postives = 59/80 (73.75%), Query Frame = 2
Query:    5 YSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            Y++WE S  F A   S KP + I++PPPNVTG LH+GHAL   +QD +IR++RMSG+   WVPG DHAGIATQ VVE+ L
Sbjct:   20 YAFWEESTMFTAQAASDKPPYAIIMPPPNVTGILHMGHALVNTLQDVLIRYKRMSGFEVCWVPGTDHAGIATQTVVERHL 99          
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_CORDI (Valyl-tRNA synthetase OS=Corynebacterium diphtheriae GN=valS PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 7.679e-24
Identity = 51/80 (63.75%), Postives = 56/80 (70.00%), Query Frame = 2
Query:    5 YSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            Y  W   GYF AD  SSKP+F IVLPPPNVTG LH+GHAL   + D I R +RM GY  LW+PGMDHAGIATQ  VE  L
Sbjct:   39 YEGWVEKGYFTADPSSSKPAFSIVLPPPNVTGQLHMGHALDHTLMDGIARRKRMQGYEVLWLPGMDHAGIATQTKVEAML 118          
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_CHLPN (Valyl-tRNA synthetase OS=Chlamydia pneumoniae GN=valS PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 7.679e-24
Identity = 44/80 (55.00%), Postives = 60/80 (75.00%), Query Frame = 2
Query:    5 YSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            Y +WE +G F A+  S KP + +++PPPNVTG LH+GHAL   +QD ++R++RMSG+   W+PG DHAGIATQ VVE+ L
Sbjct:   20 YVFWEKNGMFKAEASSDKPPYSVIMPPPNVTGVLHMGHALVNTLQDVLVRYKRMSGFEVCWIPGTDHAGIATQAVVERHL 99          
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYVM_DICDI (Probable valyl-tRNA synthetase, mitochondrial OS=Dictyostelium discoideum GN=valS2 PE=3 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 7.679e-24
Identity = 48/80 (60.00%), Postives = 62/80 (77.50%), Query Frame = 2
Query:    5 YSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            Y +W++SG F   + +    F +VLPPPNVTG+LHIGH+LTT IQD++IR+ RM G   LWVPG+DH+GIATQV VEK+L
Sbjct:   44 YKYWQDSGLFKPKSNNGGEKFSMVLPPPNVTGSLHIGHSLTTTIQDSLIRYNRMMGKEVLWVPGLDHSGIATQVAVEKEL 123          
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_PHOLL (Valyl-tRNA synthetase OS=Photorhabdus luminescens subsp. laumondii GN=valS PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.711e-23
Identity = 48/80 (60.00%), Postives = 61/80 (76.25%), Query Frame = 2
Query:    5 YSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            Y+ WE SGYF  +  +S+ SF IV+PPPNVTG+LH+GHA    I DT+IR++RM G N LW  G DHAGIATQ+VVE+K+
Sbjct:   29 YNHWEKSGYFKPNGDTSRESFCIVIPPPNVTGSLHMGHAFQQTIMDTMIRYQRMQGKNTLWQSGTDHAGIATQMVVERKI 108          
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_MYCPA (Valyl-tRNA synthetase OS=Mycobacterium paratuberculosis GN=valS PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.711e-23
Identity = 49/80 (61.25%), Postives = 59/80 (73.75%), Query Frame = 2
Query:    5 YSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            Y  W ++GYF A+  S KP + IVLPPPNVTG+LH+GHAL   + D + R +RM GY  LW PGMDHAGIATQ VVEK+L
Sbjct:   25 YRQWVDAGYFTANPASDKPGYSIVLPPPNVTGSLHMGHALEHTMMDALTRRKRMQGYEVLWQPGMDHAGIATQSVVEKQL 104          
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_LARHH (Valyl-tRNA synthetase OS=Laribacter hongkongensis (strain HLHK9) GN=valS PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.711e-23
Identity = 48/81 (59.26%), Postives = 57/81 (70.37%), Query Frame = 2
Query:    2 WYSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            WY  WE +GYF     + +PSF I LPPPNVTG LH+GHA    I D + R+ RM G N LWVPG DHAGIATQ+VVE++L
Sbjct:   16 WYDRWEAAGYFKPSMDTDRPSFCIQLPPPNVTGTLHMGHAFNQTIMDGLTRYYRMKGDNTLWVPGADHAGIATQIVVERQL 96          
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_MESFL (Valyl-tRNA synthetase OS=Mesoplasma florum GN=valS PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.234e-23
Identity = 48/80 (60.00%), Postives = 62/80 (77.50%), Query Frame = 2
Query:    5 YSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            Y WW  + YF A+  S KP F IVLPPPNVTG LHIGHA   ++QD IIR+++++G++ L++PGMDHAGI+TQV VE KL
Sbjct:   19 YEWWIQNEYFKANPDSKKPKFSIVLPPPNVTGKLHIGHAWDGSLQDAIIRFKKLNGFDVLYLPGMDHAGISTQVKVEAKL 98          
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_CAEEL (Valyl-tRNA synthetase OS=Caenorhabditis elegans GN=vrs-2 PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.234e-23
Identity = 51/88 (57.95%), Postives = 61/88 (69.32%), Query Frame = 2
Query:    2 WYSWWENSGYFIAD-----NKSSKP--SFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            WYSWWE  G+F  +     N  S P  SF + +PPPNVTG LH+GHAL T ++DTI R+ RM G   L+ PG DHAGIATQVVVEK+L
Sbjct:   92 WYSWWEKEGFFKPEYIDKLNPGSNPADSFTVCIPPPNVTGNLHVGHALATTVEDTITRFNRMHGKRTLFNPGCDHAGIATQVVVEKRL 179          
The following BLAST results are available for this feature:
BLAST of CF504388 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 294
Match NameE-valueIdentityDescription
SYV_GRABC4.502e-2460.00Valyl-tRNA synthetase OS=Granulibacter bethesdensi... [more]
SYV_CHLAB5.880e-2458.75Valyl-tRNA synthetase OS=Chlamydophila abortus GN=... [more]
SYV_CORDI7.679e-2463.75Valyl-tRNA synthetase OS=Corynebacterium diphtheri... [more]
SYV_CHLPN7.679e-2455.00Valyl-tRNA synthetase OS=Chlamydia pneumoniae GN=v... [more]
SYVM_DICDI7.679e-2460.00Probable valyl-tRNA synthetase, mitochondrial OS=D... [more]
SYV_PHOLL1.711e-2360.00Valyl-tRNA synthetase OS=Photorhabdus luminescens ... [more]
SYV_MYCPA1.711e-2361.25Valyl-tRNA synthetase OS=Mycobacterium paratubercu... [more]
SYV_LARHH1.711e-2359.26Valyl-tRNA synthetase OS=Laribacter hongkongensis ... [more]
SYV_MESFL2.234e-2360.00Valyl-tRNA synthetase OS=Mesoplasma florum GN=valS... [more]
SYV_CAEEL2.234e-2357.95Valyl-tRNA synthetase OS=Caenorhabditis elegans GN... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-877 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-17_G07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504388 ID=CF504388; Name=CF504388; organism=Citrus sinensis; type=EST; length=245bp
GTGGTATTCGTGGTGGGAGAACTCTGGATATTTCATTGCAGATAACAAGA
GCTCGAAGCCATCCTTTGTGATTGTTCTACCCCCACCAAATGTGACTGGT
GCCCTACATATAGGACATGCCCTCACAACAGCCATACAGGATACAATTAT
ACGTTGGAGGAGAATGTCTGGATATAATGCCTTGTGGGTACCTGGCATGG
ACCATGCTGGGATTGCAACACAGGTGGTTGTAGAGAAGAAGCTAA
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