CF504388

Overview
NameCF504388
Unique NameCF504388
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length245
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_BUCBP (Valyl-tRNA synthetase OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=valS PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.234e-23
Identity = 47/80 (58.75%), Postives = 56/80 (70.00%), Query Frame = 2
Query:    5 YSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            Y +WE +GYF   N   KP+F IV+PPPN+TG LHIGHA    I D +IR+ RM G N  W  G DHAGIATQ+VVEKK+
Sbjct:   16 YEFWEKNGYFKPQNNKGKPNFCIVMPPPNITGNLHIGHAFQQTIMDILIRYNRMIGKNTFWQVGTDHAGIATQIVVEKKI 95          
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_THETH (Valyl-tRNA synthetase OS=Thermus thermophilus GN=valS PE=1 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 2.918e-23
Identity = 48/81 (59.26%), Postives = 63/81 (77.78%), Query Frame = 2
Query:    2 WYSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            W   W  +  F+A+ KS KP FVI +PPPNVTG+LH+GHAL  ++QD +IR++RM G+ A+W+PG DHAGIATQVVVE+ L
Sbjct:   16 WAEKWAKNP-FVANPKSGKPPFVIFMPPPNVTGSLHMGHALDNSLQDALIRYKRMRGFEAVWLPGTDHAGIATQVVVERLL 95          
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_THET8 (Valyl-tRNA synthetase OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=valS PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 2.918e-23
Identity = 48/81 (59.26%), Postives = 63/81 (77.78%), Query Frame = 2
Query:    2 WYSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            W   W  +  F+A+ KS KP FVI +PPPNVTG+LH+GHAL  ++QD +IR++RM G+ A+W+PG DHAGIATQVVVE+ L
Sbjct:   16 WAEKWAKNP-FVANPKSGKPPFVIFMPPPNVTGSLHMGHALDNSLQDALIRYKRMRGFEAVWLPGTDHAGIATQVVVERLL 95          
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_THET2 (Valyl-tRNA synthetase OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=valS PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 2.918e-23
Identity = 48/81 (59.26%), Postives = 63/81 (77.78%), Query Frame = 2
Query:    2 WYSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            W   W  +  F+A+ KS KP FVI +PPPNVTG+LH+GHAL  ++QD +IR++RM G+ A+W+PG DHAGIATQVVVE+ L
Sbjct:   16 WAEKWAKNP-FVANPKSGKPPFVIFMPPPNVTGSLHMGHALDNSLQDALIRYKRMRGFEAVWLPGTDHAGIATQVVVERLL 95          
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_STRAW (Valyl-tRNA synthetase OS=Streptomyces avermitilis GN=valS PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 2.918e-23
Identity = 48/80 (60.00%), Postives = 57/80 (71.25%), Query Frame = 2
Query:    5 YSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            Y  W   GYF AD KS KP F +V+PPPNVTG+LH+GHA    + D + R +RM GY  LW PGMDHAGIATQ VVE++L
Sbjct:   30 YERWVERGYFEADAKSDKPPFTVVIPPPNVTGSLHLGHAFEHTLIDALTRRKRMQGYETLWQPGMDHAGIATQNVVEREL 109          
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_ANOFW (Valyl-tRNA synthetase OS=Anoxybacillus flavithermus (strain DSM 21510 / WK1) GN=valS PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 2.918e-23
Identity = 47/80 (58.75%), Postives = 57/80 (71.25%), Query Frame = 2
Query:    5 YSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            Y WW    +F A +  +K  F IV+PPPNVTG LH+GHA  T +QD I R +RM GY+ LW+PGMDHAGIATQ  VE+KL
Sbjct:   17 YEWWLKGKFFEATSDETKKPFTIVIPPPNVTGKLHLGHAWDTTLQDIITRMKRMQGYDVLWLPGMDHAGIATQAKVEEKL 96          
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_STAS1 (Valyl-tRNA synthetase OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=valS PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 3.811e-23
Identity = 48/80 (60.00%), Postives = 59/80 (73.75%), Query Frame = 2
Query:    5 YSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            Y  W NSGYF A +  SK ++ IV+PPPNVTG LH+GHA  T +QD + R +RM GY+ L++PGMDHAGIATQ  VE KL
Sbjct:   17 YDQWVNSGYFKAKDDQSKETYTIVIPPPNVTGKLHLGHAWDTTLQDILTRMKRMQGYDTLYLPGMDHAGIATQAKVEAKL 96          
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_HERAR (Valyl-tRNA synthetase OS=Herminiimonas arsenicoxydans GN=valS PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 3.811e-23
Identity = 45/81 (55.56%), Postives = 56/81 (69.14%), Query Frame = 2
Query:    2 WYSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            W + WE  GY+ A   + KPSF I LPPPNVTG LH+GH     I D + R+ RM G+N  W+PG DHAGIATQ+VVE++L
Sbjct:   16 WRTEWEKRGYYTATTDADKPSFSIQLPPPNVTGTLHLGHGFNQTIMDGLTRYHRMRGFNTAWIPGTDHAGIATQIVVERQL 96          
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_CORGL (Valyl-tRNA synthetase OS=Corynebacterium glutamicum GN=valS PE=3 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 3.811e-23
Identity = 48/80 (60.00%), Postives = 57/80 (71.25%), Query Frame = 2
Query:    5 YSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            Y  W ++GYF AD  S KP F IVLPPPNVTG LH+GHAL   + D + R +RM G+  LW+PGMDHAGIATQ  VE+ L
Sbjct:   34 YQGWVDAGYFTADPASDKPGFSIVLPPPNVTGQLHMGHALDHTLMDALARRKRMQGFEVLWLPGMDHAGIATQTKVEEML 113          
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_PASMU (Valyl-tRNA synthetase OS=Pasteurella multocida GN=valS PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 4.978e-23
Identity = 46/80 (57.50%), Postives = 58/80 (72.50%), Query Frame = 2
Query:    5 YSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            Y  WE SGYF     +SKPS+ I +PPPNVTG+LH+GHA    + D +IR+ RM G+N LW  G DHAGIATQ+VVE+K+
Sbjct:   21 YKHWEESGYFKPSEDTSKPSYSIAIPPPNVTGSLHMGHAFQQTLMDILIRFNRMEGHNTLWQTGTDHAGIATQMVVERKI 100          
The following BLAST results are available for this feature:
BLAST of CF504388 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 294
Match NameE-valueIdentityDescription
SYV_BUCBP2.234e-2358.75Valyl-tRNA synthetase OS=Buchnera aphidicola subsp... [more]
SYV_THETH2.918e-2359.26Valyl-tRNA synthetase OS=Thermus thermophilus GN=v... [more]
SYV_THET82.918e-2359.26Valyl-tRNA synthetase OS=Thermus thermophilus (str... [more]
SYV_THET22.918e-2359.26Valyl-tRNA synthetase OS=Thermus thermophilus (str... [more]
SYV_STRAW2.918e-2360.00Valyl-tRNA synthetase OS=Streptomyces avermitilis ... [more]
SYV_ANOFW2.918e-2358.75Valyl-tRNA synthetase OS=Anoxybacillus flavithermu... [more]
SYV_STAS13.811e-2360.00Valyl-tRNA synthetase OS=Staphylococcus saprophyti... [more]
SYV_HERAR3.811e-2355.56Valyl-tRNA synthetase OS=Herminiimonas arsenicoxyd... [more]
SYV_CORGL3.811e-2360.00Valyl-tRNA synthetase OS=Corynebacterium glutamicu... [more]
SYV_PASMU4.978e-2357.50Valyl-tRNA synthetase OS=Pasteurella multocida GN=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-877 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-17_G07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504388 ID=CF504388; Name=CF504388; organism=Citrus sinensis; type=EST; length=245bp
GTGGTATTCGTGGTGGGAGAACTCTGGATATTTCATTGCAGATAACAAGA
GCTCGAAGCCATCCTTTGTGATTGTTCTACCCCCACCAAATGTGACTGGT
GCCCTACATATAGGACATGCCCTCACAACAGCCATACAGGATACAATTAT
ACGTTGGAGGAGAATGTCTGGATATAATGCCTTGTGGGTACCTGGCATGG
ACCATGCTGGGATTGCAACACAGGTGGTTGTAGAGAAGAAGCTAA
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