CF504388

Overview
NameCF504388
Unique NameCF504388
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length245
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_MYCTU (Valyl-tRNA synthetase OS=Mycobacterium tuberculosis GN=valS PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 4.978e-23
Identity = 48/80 (60.00%), Postives = 60/80 (75.00%), Query Frame = 2
Query:    5 YSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            Y  W ++GYF AD  S+KP++ IVLPPPNVTG+LH+GHAL   + D + R +RM GY  LW PG DHAGIATQ VVE++L
Sbjct:   16 YQKWLDAGYFTADPTSTKPAYSIVLPPPNVTGSLHMGHALEHTMMDALTRRKRMQGYEVLWQPGTDHAGIATQSVVEQQL 95          
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_MYCMS (Valyl-tRNA synthetase OS=Mycoplasma mycoides subsp. mycoides SC GN=valS PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 4.978e-23
Identity = 47/80 (58.75%), Postives = 63/80 (78.75%), Query Frame = 2
Query:    5 YSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            Y +W +   F AD  S+KP F I+LPPPNVTG LHIGHA  T++QD IIR+++++GY+ L++PGMDH+GI+TQV VE KL
Sbjct:   19 YQYWLDKNLFKADINSNKPKFSIILPPPNVTGKLHIGHAWDTSLQDAIIRFKKLTGYDTLFLPGMDHSGISTQVKVEAKL 98          
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_MYCBO (Valyl-tRNA synthetase OS=Mycobacterium bovis GN=valS PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 4.978e-23
Identity = 48/80 (60.00%), Postives = 60/80 (75.00%), Query Frame = 2
Query:    5 YSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            Y  W ++GYF AD  S+KP++ IVLPPPNVTG+LH+GHAL   + D + R +RM GY  LW PG DHAGIATQ VVE++L
Sbjct:   16 YQKWLDAGYFTADPTSTKPAYSIVLPPPNVTGSLHMGHALEHTMMDALTRRKRMQGYEVLWQPGTDHAGIATQSVVEQQL 95          
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_STRCO (Valyl-tRNA synthetase OS=Streptomyces coelicolor GN=valS PE=3 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 6.501e-23
Identity = 47/80 (58.75%), Postives = 57/80 (71.25%), Query Frame = 2
Query:    5 YSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            Y  W   GYF AD KS KP + +V+PPPNVTG+LH+GHA    + D + R +RM GY  LW PGMDHAGIATQ VVE++L
Sbjct:   30 YERWVERGYFEADAKSDKPPYTVVIPPPNVTGSLHLGHAFEHTLIDALTRRKRMQGYETLWQPGMDHAGIATQNVVEREL 109          
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_GEOKA (Valyl-tRNA synthetase OS=Geobacillus kaustophilus GN=valS PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 6.501e-23
Identity = 47/80 (58.75%), Postives = 56/80 (70.00%), Query Frame = 2
Query:    5 YSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            Y WW    +F A    +K  F IV+PPPNVTG LH+GHA  T +QD I R +RM GY+ LW+PGMDHAGIATQ  VE+KL
Sbjct:   22 YEWWLKGKFFEATGDPNKRPFTIVIPPPNVTGKLHLGHAWDTTLQDIITRMKRMQGYDVLWLPGMDHAGIATQAKVEEKL 101          
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_BACST (Valyl-tRNA synthetase OS=Bacillus stearothermophilus GN=valS PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 6.501e-23
Identity = 47/80 (58.75%), Postives = 56/80 (70.00%), Query Frame = 2
Query:    5 YSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            Y WW    +F A    +K  F IV+PPPNVTG LH+GHA  T +QD I R +RM GY+ LW+PGMDHAGIATQ  VE+KL
Sbjct:   22 YEWWLKGKFFEATGDPNKRPFTIVIPPPNVTGKLHLGHAWDTTLQDIITRMKRMQGYDVLWLPGMDHAGIATQAKVEEKL 101          
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_BACHD (Valyl-tRNA synthetase OS=Bacillus halodurans GN=valS PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 6.501e-23
Identity = 46/81 (56.79%), Postives = 58/81 (71.60%), Query Frame = 2
Query:    2 WYSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            WY +W    +F A +  +K  + IV+PPPNVTG LH+GHA  TA+QD + R +RM GY+ LW+PGMDHAGIATQ  VE KL
Sbjct:   21 WYEYWIEGKFFEATSDETKKPYTIVIPPPNVTGKLHLGHAWDTALQDILSRLKRMQGYDTLWLPGMDHAGIATQAKVEAKL 101          
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_THEMA (Valyl-tRNA synthetase OS=Thermotoga maritima GN=valS PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 8.491e-23
Identity = 46/81 (56.79%), Postives = 57/81 (70.37%), Query Frame = 2
Query:    2 WYSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            WY +WE  GYF       K  F IV+PPPN+TG +H+GHAL   +QD ++R++RM GY+ LWVPG DHAGIATQ  VEK L
Sbjct:   17 WYRYWEEKGYFTPKGVGEK--FSIVIPPPNITGRIHMGHALNITLQDIVVRYKRMKGYDVLWVPGEDHAGIATQNAVEKFL 95          
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_JANMA (Valyl-tRNA synthetase OS=Janthinobacterium sp. (strain Marseille) GN=valS PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 8.491e-23
Identity = 44/81 (54.32%), Postives = 56/81 (69.14%), Query Frame = 2
Query:    2 WYSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            W + WE  GY+ A   + KP+F I LPPPNVTG LH+GH     I D + R+ RM G+N  W+PG DHAGIATQ+VVE++L
Sbjct:   16 WRTEWEKRGYYTATTDADKPAFSIQLPPPNVTGTLHLGHGFNQTIMDGLTRYHRMRGFNTAWIPGTDHAGIATQIVVERQL 96          
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_HAEIG (Valyl-tRNA synthetase OS=Haemophilus influenzae (strain PittGG) GN=valS PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 8.491e-23
Identity = 45/80 (56.25%), Postives = 57/80 (71.25%), Query Frame = 2
Query:    5 YSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            Y  WE SGYF      + PS+ I +PPPNVTG+LH+GHA    + DT+IR+ RM G+N LW  G DHAGIATQ+VVE+K+
Sbjct:   21 YQHWEESGYFKPSENENAPSYCIAIPPPNVTGSLHMGHAFQQTLMDTLIRFNRMEGHNTLWQAGTDHAGIATQMVVERKI 100          
The following BLAST results are available for this feature:
BLAST of CF504388 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 294
Match NameE-valueIdentityDescription
SYV_MYCTU4.978e-2360.00Valyl-tRNA synthetase OS=Mycobacterium tuberculosi... [more]
SYV_MYCMS4.978e-2358.75Valyl-tRNA synthetase OS=Mycoplasma mycoides subsp... [more]
SYV_MYCBO4.978e-2360.00Valyl-tRNA synthetase OS=Mycobacterium bovis GN=va... [more]
SYV_STRCO6.501e-2358.75Valyl-tRNA synthetase OS=Streptomyces coelicolor G... [more]
SYV_GEOKA6.501e-2358.75Valyl-tRNA synthetase OS=Geobacillus kaustophilus ... [more]
SYV_BACST6.501e-2358.75Valyl-tRNA synthetase OS=Bacillus stearothermophil... [more]
SYV_BACHD6.501e-2356.79Valyl-tRNA synthetase OS=Bacillus halodurans GN=va... [more]
SYV_THEMA8.491e-2356.79Valyl-tRNA synthetase OS=Thermotoga maritima GN=va... [more]
SYV_JANMA8.491e-2354.32Valyl-tRNA synthetase OS=Janthinobacterium sp. (st... [more]
SYV_HAEIG8.491e-2356.25Valyl-tRNA synthetase OS=Haemophilus influenzae (s... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-877 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-17_G07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504388 ID=CF504388; Name=CF504388; organism=Citrus sinensis; type=EST; length=245bp
GTGGTATTCGTGGTGGGAGAACTCTGGATATTTCATTGCAGATAACAAGA
GCTCGAAGCCATCCTTTGTGATTGTTCTACCCCCACCAAATGTGACTGGT
GCCCTACATATAGGACATGCCCTCACAACAGCCATACAGGATACAATTAT
ACGTTGGAGGAGAATGTCTGGATATAATGCCTTGTGGGTACCTGGCATGG
ACCATGCTGGGATTGCAACACAGGTGGTTGTAGAGAAGAAGCTAA
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