CF504388

Overview
NameCF504388
Unique NameCF504388
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length245
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_HAEIE (Valyl-tRNA synthetase OS=Haemophilus influenzae (strain PittEE) GN=valS PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 8.491e-23
Identity = 45/80 (56.25%), Postives = 57/80 (71.25%), Query Frame = 2
Query:    5 YSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            Y  WE SGYF      + PS+ I +PPPNVTG+LH+GHA    + DT+IR+ RM G+N LW  G DHAGIATQ+VVE+K+
Sbjct:   21 YQHWEESGYFKPSGNENAPSYCIAIPPPNVTGSLHMGHAFQQTLMDTLIRFNRMEGHNTLWQAGTDHAGIATQMVVERKI 100          
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_HAEI8 (Valyl-tRNA synthetase OS=Haemophilus influenzae (strain 86-028NP) GN=valS PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 8.491e-23
Identity = 45/80 (56.25%), Postives = 57/80 (71.25%), Query Frame = 2
Query:    5 YSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            Y  WE SGYF      + PS+ I +PPPNVTG+LH+GHA    + DT+IR+ RM G+N LW  G DHAGIATQ+VVE+K+
Sbjct:   21 YQHWEESGYFKPSENENAPSYCIAIPPPNVTGSLHMGHAFQQTLMDTLIRFNRMEGHNTLWQAGTDHAGIATQMVVERKI 100          
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_ERWCT (Valyl-tRNA synthetase OS=Erwinia carotovora subsp. atroseptica GN=valS PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 8.491e-23
Identity = 47/80 (58.75%), Postives = 58/80 (72.50%), Query Frame = 2
Query:    5 YSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            Y  WE  GYF     +SK SF I++PPPNVTG+LH+GHA    I DT+IR++RM G N LW  G DHAGIATQ+VVE+K+
Sbjct:   15 YEHWEKQGYFKPHGNTSKESFSIMIPPPNVTGSLHMGHAFQQTIMDTLIRYQRMQGKNTLWQAGTDHAGIATQMVVERKI 94          
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_COREF (Valyl-tRNA synthetase OS=Corynebacterium efficiens GN=valS PE=3 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 8.491e-23
Identity = 47/80 (58.75%), Postives = 57/80 (71.25%), Query Frame = 2
Query:    5 YSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            Y  W ++GYF AD  S KP + IVLPPPNVTG LH+GHAL   + D + R +RM G+  LW+PGMDHAGIATQ  VE+ L
Sbjct:   34 YQGWVDAGYFTADPASEKPGYSIVLPPPNVTGQLHMGHALDHTLMDALARRKRMQGFEVLWLPGMDHAGIATQTKVEEML 113          
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_CARHZ (Valyl-tRNA synthetase OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=valS PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 8.491e-23
Identity = 45/81 (55.56%), Postives = 60/81 (74.07%), Query Frame = 2
Query:    2 WYSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            WY +WE +G+F  +    +P F IV+PPPNVTG LH+GHAL   +QD + R++RM G+N LW+PG DHAGIATQ  VE++L
Sbjct:   18 WYKYWEENGFFHTEPDEREP-FCIVMPPPNVTGQLHMGHALDNTMQDILARYKRMQGFNTLWLPGTDHAGIATQAKVEEEL 97          
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_YERPS (Valyl-tRNA synthetase OS=Yersinia pseudotuberculosis GN=valS PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.109e-22
Identity = 46/80 (57.50%), Postives = 59/80 (73.75%), Query Frame = 2
Query:    5 YSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            Y  WE  GYF  +  +SK S+ I++PPPNVTG+LH+GHA    I DT+IR++RM G N LW  G DHAGIATQ+VVE+K+
Sbjct:   29 YEHWEKQGYFKPNGDTSKESYCIMIPPPNVTGSLHMGHAFQQTIMDTLIRYQRMQGKNTLWQAGTDHAGIATQMVVERKI 108          
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_YERPE (Valyl-tRNA synthetase OS=Yersinia pestis GN=valS PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.109e-22
Identity = 46/80 (57.50%), Postives = 59/80 (73.75%), Query Frame = 2
Query:    5 YSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            Y  WE  GYF  +  +SK S+ I++PPPNVTG+LH+GHA    I DT+IR++RM G N LW  G DHAGIATQ+VVE+K+
Sbjct:   29 YEHWEKQGYFKPNGDTSKESYCIMIPPPNVTGSLHMGHAFQQTIMDTLIRYQRMQGKNTLWQAGTDHAGIATQMVVERKI 108          
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_SCHPO (Valyl-tRNA synthetase OS=Schizosaccharomyces pombe GN=vas2 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.109e-22
Identity = 52/86 (60.47%), Postives = 59/86 (68.60%), Query Frame = 2
Query:    2 WYSWWENSGYFIA----DNKSSKPS-FVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            WY WW  SG+F      D K  K   FVI  PPPNVTGALHIGHALT AIQD++ RW RM G   L++ G DHAG++TQ VVEKKL
Sbjct:  106 WYDWWVKSGFFEPEFGPDGKPKKEGVFVITSPPPNVTGALHIGHALTIAIQDSLARWNRMLGKTVLFLGGFDHAGLSTQSVVEKKL 191          
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_SALTY (Valyl-tRNA synthetase OS=Salmonella typhimurium GN=valS PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.109e-22
Identity = 47/80 (58.75%), Postives = 58/80 (72.50%), Query Frame = 2
Query:    5 YSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            Y  WE  GYF  +   SK SF I++PPPNVTG+LH+GHA    I DT+IR++RM G N LW  G DHAGIATQ+VVE+K+
Sbjct:   15 YEHWEKQGYFKPNGDESKESFCIMIPPPNVTGSLHMGHAFQQTIMDTMIRYQRMQGKNTLWQVGTDHAGIATQMVVERKI 94          
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_SALTI (Valyl-tRNA synthetase OS=Salmonella typhi GN=valS PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.109e-22
Identity = 47/80 (58.75%), Postives = 58/80 (72.50%), Query Frame = 2
Query:    5 YSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            Y  WE  GYF  +   SK SF I++PPPNVTG+LH+GHA    I DT+IR++RM G N LW  G DHAGIATQ+VVE+K+
Sbjct:   15 YEHWEKQGYFKPNGDESKESFCIMIPPPNVTGSLHMGHAFQQTIMDTMIRYQRMQGKNTLWQVGTDHAGIATQMVVERKI 94          
The following BLAST results are available for this feature:
BLAST of CF504388 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 294
Match NameE-valueIdentityDescription
SYV_HAEIE8.491e-2356.25Valyl-tRNA synthetase OS=Haemophilus influenzae (s... [more]
SYV_HAEI88.491e-2356.25Valyl-tRNA synthetase OS=Haemophilus influenzae (s... [more]
SYV_ERWCT8.491e-2358.75Valyl-tRNA synthetase OS=Erwinia carotovora subsp.... [more]
SYV_COREF8.491e-2358.75Valyl-tRNA synthetase OS=Corynebacterium efficiens... [more]
SYV_CARHZ8.491e-2355.56Valyl-tRNA synthetase OS=Carboxydothermus hydrogen... [more]
SYV_YERPS1.109e-2257.50Valyl-tRNA synthetase OS=Yersinia pseudotuberculos... [more]
SYV_YERPE1.109e-2257.50Valyl-tRNA synthetase OS=Yersinia pestis GN=valS P... [more]
SYV_SCHPO1.109e-2260.47Valyl-tRNA synthetase OS=Schizosaccharomyces pombe... [more]
SYV_SALTY1.109e-2258.75Valyl-tRNA synthetase OS=Salmonella typhimurium GN... [more]
SYV_SALTI1.109e-2258.75Valyl-tRNA synthetase OS=Salmonella typhi GN=valS ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-877 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-17_G07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504388 ID=CF504388; Name=CF504388; organism=Citrus sinensis; type=EST; length=245bp
GTGGTATTCGTGGTGGGAGAACTCTGGATATTTCATTGCAGATAACAAGA
GCTCGAAGCCATCCTTTGTGATTGTTCTACCCCCACCAAATGTGACTGGT
GCCCTACATATAGGACATGCCCTCACAACAGCCATACAGGATACAATTAT
ACGTTGGAGGAGAATGTCTGGATATAATGCCTTGTGGGTACCTGGCATGG
ACCATGCTGGGATTGCAACACAGGTGGTTGTAGAGAAGAAGCTAA
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