CF504388

Overview
NameCF504388
Unique NameCF504388
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length245
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_SALPA (Valyl-tRNA synthetase OS=Salmonella paratyphi A GN=valS PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.109e-22
Identity = 47/80 (58.75%), Postives = 58/80 (72.50%), Query Frame = 2
Query:    5 YSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            Y  WE  GYF  +   SK SF I++PPPNVTG+LH+GHA    I DT+IR++RM G N LW  G DHAGIATQ+VVE+K+
Sbjct:   15 YEHWEKQGYFKPNGDESKESFCIMIPPPNVTGSLHMGHAFQQTIMDTMIRYQRMQGKNTLWQVGTDHAGIATQMVVERKI 94          
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_SALCH (Valyl-tRNA synthetase OS=Salmonella choleraesuis GN=valS PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.109e-22
Identity = 47/80 (58.75%), Postives = 58/80 (72.50%), Query Frame = 2
Query:    5 YSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            Y  WE  GYF  +   SK SF I++PPPNVTG+LH+GHA    I DT+IR++RM G N LW  G DHAGIATQ+VVE+K+
Sbjct:   15 YEHWEKQGYFKPNGDESKESFCIMIPPPNVTGSLHMGHAFQQTIMDTMIRYQRMQGKNTLWQVGTDHAGIATQMVVERKI 94          
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_HAEIN (Valyl-tRNA synthetase OS=Haemophilus influenzae GN=valS PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.109e-22
Identity = 45/80 (56.25%), Postives = 57/80 (71.25%), Query Frame = 2
Query:    5 YSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            Y  WE SGYF      + PS+ I +PPPNVTG+LH+GHA    + DT+IR+ RM G+N LW  G DHAGIATQ+VVE+K+
Sbjct:   21 YQRWEESGYFKPSENENAPSYCIAIPPPNVTGSLHMGHAFQQTLMDTLIRFNRMEGHNTLWQTGTDHAGIATQMVVERKI 100          
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_CLOAB (Valyl-tRNA synthetase OS=Clostridium acetobutylicum GN=valS PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.109e-22
Identity = 44/80 (55.00%), Postives = 58/80 (72.50%), Query Frame = 2
Query:    5 YSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            Y WWE  G+F      +K  + I++PPPN+TG LH+GHAL  A+QD +IR +RM GY ALW+PG DHA IAT+V VEK++
Sbjct:   21 YKWWEEEGFFTPKVDKNKKPYTIMMPPPNITGKLHLGHALDCALQDFMIRAKRMQGYEALWLPGQDHASIATEVRVEKEI 100          
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_THETN (Valyl-tRNA synthetase OS=Thermoanaerobacter tengcongensis GN=valS PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 1.448e-22
Identity = 45/80 (56.25%), Postives = 56/80 (70.00%), Query Frame = 2
Query:    5 YSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            YS+W   G+F  +    K  F IV+PPPNVTG LH+GHAL   +QD +IRWRRM GY ALW+PG DHA IAT++ V  K+
Sbjct:   18 YSFWMEKGFFTPEIDPEKKPFTIVIPPPNVTGELHMGHALDNTLQDILIRWRRMQGYAALWIPGTDHASIATEIKVLDKI 97          
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_NEIG1 (Valyl-tRNA synthetase OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090) GN=valS PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.892e-22
Identity = 47/80 (58.75%), Postives = 56/80 (70.00%), Query Frame = 2
Query:    5 YSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            Y  WE+ GYF  D   +KPSF I LPPPNVTG LH+GHA    I D + R+ RM G N  W+PG DHAGIATQ+VVE++L
Sbjct:   15 YQNWESQGYFRPDMDLTKPSFSIQLPPPNVTGTLHMGHAFNQTIMDGLTRYYRMKGCNTAWIPGTDHAGIATQIVVERQL 94          
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_BARHE (Valyl-tRNA synthetase OS=Bartonella henselae GN=valS PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.892e-22
Identity = 49/79 (62.03%), Postives = 62/79 (78.48%), Query Frame = 2
Query:   14 WENSGYFIAD--NKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            WE  G F A   +KS+  SF ++LPPPNVTG+LH+GHAL T IQD ++R++RM G N LW PGMDHAGIATQ+VVE++L
Sbjct:   19 WEARGAFKAGMGSKSAAQSFCVMLPPPNVTGSLHMGHALNTTIQDIVVRFQRMRGKNVLWQPGMDHAGIATQMVVERQL 97          
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_BACHK (Valyl-tRNA synthetase OS=Bacillus thuringiensis subsp. konkukian GN=valS PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.892e-22
Identity = 46/80 (57.50%), Postives = 54/80 (67.50%), Query Frame = 2
Query:    5 YSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            Y WW    YF A     K  + IV+PPPNVTG LH+GHA  T +QD + R +RM GY+ LW+PGMDHAGIATQ  VE KL
Sbjct:   22 YQWWLEGKYFEATGDEKKQPYTIVIPPPNVTGKLHLGHAWDTTLQDILTRTKRMQGYDVLWLPGMDHAGIATQAKVEGKL 101          
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_BACCZ (Valyl-tRNA synthetase OS=Bacillus cereus (strain ZK / E33L) GN=valS PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.892e-22
Identity = 46/80 (57.50%), Postives = 54/80 (67.50%), Query Frame = 2
Query:    5 YSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            Y WW    YF A     K  + IV+PPPNVTG LH+GHA  T +QD + R +RM GY+ LW+PGMDHAGIATQ  VE KL
Sbjct:   22 YQWWLEGKYFEATGDEKKQPYTIVIPPPNVTGKLHLGHAWDTTLQDILTRTKRMQGYDVLWLPGMDHAGIATQAKVEGKL 101          
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_BACCR (Valyl-tRNA synthetase OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=valS PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.892e-22
Identity = 46/80 (57.50%), Postives = 54/80 (67.50%), Query Frame = 2
Query:    5 YSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            Y WW    YF A     K  + IV+PPPNVTG LH+GHA  T +QD + R +RM GY+ LW+PGMDHAGIATQ  VE KL
Sbjct:   22 YQWWLEGKYFEATGDEKKQPYTIVIPPPNVTGKLHLGHAWDTTLQDILTRTKRMQGYDVLWLPGMDHAGIATQAKVEGKL 101          
The following BLAST results are available for this feature:
BLAST of CF504388 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 294
Match NameE-valueIdentityDescription
SYV_SALPA1.109e-2258.75Valyl-tRNA synthetase OS=Salmonella paratyphi A GN... [more]
SYV_SALCH1.109e-2258.75Valyl-tRNA synthetase OS=Salmonella choleraesuis G... [more]
SYV_HAEIN1.109e-2256.25Valyl-tRNA synthetase OS=Haemophilus influenzae GN... [more]
SYV_CLOAB1.109e-2255.00Valyl-tRNA synthetase OS=Clostridium acetobutylicu... [more]
SYV_THETN1.448e-2256.25Valyl-tRNA synthetase OS=Thermoanaerobacter tengco... [more]
SYV_NEIG11.892e-2258.75Valyl-tRNA synthetase OS=Neisseria gonorrhoeae (st... [more]
SYV_BARHE1.892e-2262.03Valyl-tRNA synthetase OS=Bartonella henselae GN=va... [more]
SYV_BACHK1.892e-2257.50Valyl-tRNA synthetase OS=Bacillus thuringiensis su... [more]
SYV_BACCZ1.892e-2257.50Valyl-tRNA synthetase OS=Bacillus cereus (strain Z... [more]
SYV_BACCR1.892e-2257.50Valyl-tRNA synthetase OS=Bacillus cereus (strain A... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-877 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-17_G07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504388 ID=CF504388; Name=CF504388; organism=Citrus sinensis; type=EST; length=245bp
GTGGTATTCGTGGTGGGAGAACTCTGGATATTTCATTGCAGATAACAAGA
GCTCGAAGCCATCCTTTGTGATTGTTCTACCCCCACCAAATGTGACTGGT
GCCCTACATATAGGACATGCCCTCACAACAGCCATACAGGATACAATTAT
ACGTTGGAGGAGAATGTCTGGATATAATGCCTTGTGGGTACCTGGCATGG
ACCATGCTGGGATTGCAACACAGGTGGTTGTAGAGAAGAAGCTAA
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