CF504388

Overview
NameCF504388
Unique NameCF504388
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length245
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_BACC1 (Valyl-tRNA synthetase OS=Bacillus cereus (strain ATCC 10987) GN=valS PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.892e-22
Identity = 46/80 (57.50%), Postives = 54/80 (67.50%), Query Frame = 2
Query:    5 YSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            Y WW    YF A     K  + IV+PPPNVTG LH+GHA  T +QD + R +RM GY+ LW+PGMDHAGIATQ  VE KL
Sbjct:   22 YQWWLEGKYFEATGDEKKQPYTIVIPPPNVTGKLHLGHAWDTTLQDILTRTKRMQGYDVLWLPGMDHAGIATQAKVEGKL 101          
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_BACAN (Valyl-tRNA synthetase OS=Bacillus anthracis GN=valS PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.892e-22
Identity = 46/80 (57.50%), Postives = 54/80 (67.50%), Query Frame = 2
Query:    5 YSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            Y WW    YF A     K  + IV+PPPNVTG LH+GHA  T +QD + R +RM GY+ LW+PGMDHAGIATQ  VE KL
Sbjct:   22 YQWWLEGKYFEATGDEKKQPYTIVIPPPNVTGKLHLGHAWDTTLQDILTRTKRMQGYDVLWLPGMDHAGIATQAKVEGKL 101          
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_NITEU (Valyl-tRNA synthetase OS=Nitrosomonas europaea GN=valS PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.470e-22
Identity = 45/81 (55.56%), Postives = 56/81 (69.14%), Query Frame = 2
Query:    2 WYSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            WYS WE +GYF   +      + I+LPPPNVTG LH+GHA    + D +IR+ RM G N LW PG DHAGIATQ+VVE++L
Sbjct:   16 WYSTWETAGYFSPTDHKGADPYCIMLPPPNVTGTLHMGHAFQHTLMDALIRYHRMLGDNTLWQPGTDHAGIATQIVVERQL 96          
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_NITEC (Valyl-tRNA synthetase OS=Nitrosomonas eutropha (strain C91) GN=valS PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.470e-22
Identity = 45/81 (55.56%), Postives = 57/81 (70.37%), Query Frame = 2
Query:    2 WYSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            WYS WE +GYF    +    ++ I+LPPPNVTG LH+GHA    + D +IR+ RM G N LW PG DHAGIATQ+VVE++L
Sbjct:   16 WYSVWETAGYFSPAKREEVNAYCIMLPPPNVTGTLHMGHAFQHTLMDALIRYHRMLGDNTLWQPGTDHAGIATQIVVERQL 96          
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_NEIMB (Valyl-tRNA synthetase OS=Neisseria meningitidis serogroup B GN=valS PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.470e-22
Identity = 47/80 (58.75%), Postives = 55/80 (68.75%), Query Frame = 2
Query:    5 YSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            Y  WE  GYF  D   +KPSF I LPPPNVTG LH+GHA    I D + R+ RM G N  W+PG DHAGIATQ+VVE++L
Sbjct:   15 YQNWEEQGYFQPDMDLTKPSFSIQLPPPNVTGTLHMGHAFNQTIMDGLTRYYRMKGCNTAWIPGTDHAGIATQIVVERQL 94          
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_NEIMA (Valyl-tRNA synthetase OS=Neisseria meningitidis serogroup A GN=valS PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.470e-22
Identity = 47/80 (58.75%), Postives = 55/80 (68.75%), Query Frame = 2
Query:    5 YSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            Y  WE  GYF  D   +KPSF I LPPPNVTG LH+GHA    I D + R+ RM G N  W+PG DHAGIATQ+VVE++L
Sbjct:   15 YQNWEEQGYFQPDMDLTKPSFSIQLPPPNVTGTLHMGHAFNQTIMDGLTRYYRMKGCNTAWIPGTDHAGIATQIVVERQL 94          
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_CORJK (Valyl-tRNA synthetase OS=Corynebacterium jeikeium (strain K411) GN=valS PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.470e-22
Identity = 48/80 (60.00%), Postives = 55/80 (68.75%), Query Frame = 2
Query:    5 YSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            Y  W +SGYF AD  S KP F IVLPPPNVTG LH+GHAL   + D + R +RM G+  LW+PG DHAGIATQ  VE  L
Sbjct:   48 YQGWVDSGYFKADPSSDKPPFSIVLPPPNVTGQLHMGHALDHTLMDAMARRKRMQGFEVLWLPGSDHAGIATQTKVEANL 127          
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_SHISS (Valyl-tRNA synthetase OS=Shigella sonnei (strain Ss046) GN=valS PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 3.226e-22
Identity = 46/80 (57.50%), Postives = 58/80 (72.50%), Query Frame = 2
Query:    5 YSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            Y  WE  GYF  +   S+ SF I++PPPNVTG+LH+GHA    I DT+IR++RM G N LW  G DHAGIATQ+VVE+K+
Sbjct:   15 YEHWEKQGYFKPNGDESQESFCIMIPPPNVTGSLHMGHAFQQTIMDTMIRYQRMQGKNTLWQVGTDHAGIATQMVVERKI 94          
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_SHIFL (Valyl-tRNA synthetase OS=Shigella flexneri GN=valS PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 3.226e-22
Identity = 46/80 (57.50%), Postives = 58/80 (72.50%), Query Frame = 2
Query:    5 YSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            Y  WE  GYF  +   S+ SF I++PPPNVTG+LH+GHA    I DT+IR++RM G N LW  G DHAGIATQ+VVE+K+
Sbjct:   15 YEHWEKQGYFKPNGDESQESFCIMIPPPNVTGSLHMGHAFQQTIMDTMIRYQRMQGKNTLWQVGTDHAGIATQMVVERKI 94          
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_SHIDS (Valyl-tRNA synthetase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=valS PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 3.226e-22
Identity = 46/80 (57.50%), Postives = 58/80 (72.50%), Query Frame = 2
Query:    5 YSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            Y  WE  GYF  +   S+ SF I++PPPNVTG+LH+GHA    I DT+IR++RM G N LW  G DHAGIATQ+VVE+K+
Sbjct:   15 YEHWEKQGYFKPNGDESQESFCIMIPPPNVTGSLHMGHAFQQTIMDTMIRYQRMQGKNTLWQVGTDHAGIATQMVVERKI 94          
The following BLAST results are available for this feature:
BLAST of CF504388 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 294
Match NameE-valueIdentityDescription
SYV_BACC11.892e-2257.50Valyl-tRNA synthetase OS=Bacillus cereus (strain A... [more]
SYV_BACAN1.892e-2257.50Valyl-tRNA synthetase OS=Bacillus anthracis GN=val... [more]
SYV_NITEU2.470e-2255.56Valyl-tRNA synthetase OS=Nitrosomonas europaea GN=... [more]
SYV_NITEC2.470e-2255.56Valyl-tRNA synthetase OS=Nitrosomonas eutropha (st... [more]
SYV_NEIMB2.470e-2258.75Valyl-tRNA synthetase OS=Neisseria meningitidis se... [more]
SYV_NEIMA2.470e-2258.75Valyl-tRNA synthetase OS=Neisseria meningitidis se... [more]
SYV_CORJK2.470e-2260.00Valyl-tRNA synthetase OS=Corynebacterium jeikeium ... [more]
SYV_SHISS3.226e-2257.50Valyl-tRNA synthetase OS=Shigella sonnei (strain S... [more]
SYV_SHIFL3.226e-2257.50Valyl-tRNA synthetase OS=Shigella flexneri GN=valS... [more]
SYV_SHIDS3.226e-2257.50Valyl-tRNA synthetase OS=Shigella dysenteriae sero... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-877 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-17_G07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504388 ID=CF504388; Name=CF504388; organism=Citrus sinensis; type=EST; length=245bp
GTGGTATTCGTGGTGGGAGAACTCTGGATATTTCATTGCAGATAACAAGA
GCTCGAAGCCATCCTTTGTGATTGTTCTACCCCCACCAAATGTGACTGGT
GCCCTACATATAGGACATGCCCTCACAACAGCCATACAGGATACAATTAT
ACGTTGGAGGAGAATGTCTGGATATAATGCCTTGTGGGTACCTGGCATGG
ACCATGCTGGGATTGCAACACAGGTGGTTGTAGAGAAGAAGCTAA
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