CF504388

Overview
NameCF504388
Unique NameCF504388
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length245
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_SHIBS (Valyl-tRNA synthetase OS=Shigella boydii serotype 4 (strain Sb227) GN=valS PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 3.226e-22
Identity = 46/80 (57.50%), Postives = 58/80 (72.50%), Query Frame = 2
Query:    5 YSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            Y  WE  GYF  +   S+ SF I++PPPNVTG+LH+GHA    I DT+IR++RM G N LW  G DHAGIATQ+VVE+K+
Sbjct:   15 YEHWEKQGYFKPNGDESQESFCIMIPPPNVTGSLHMGHAFQQTIMDTMIRYQRMQGKNTLWQVGTDHAGIATQMVVERKI 94          
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_ECOLI (Valyl-tRNA synthetase OS=Escherichia coli (strain K12) GN=valS PE=1 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 3.226e-22
Identity = 46/80 (57.50%), Postives = 58/80 (72.50%), Query Frame = 2
Query:    5 YSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            Y  WE  GYF  +   S+ SF I++PPPNVTG+LH+GHA    I DT+IR++RM G N LW  G DHAGIATQ+VVE+K+
Sbjct:   15 YEHWEKQGYFKPNGDESQESFCIMIPPPNVTGSLHMGHAFQQTIMDTMIRYQRMQGKNTLWQVGTDHAGIATQMVVERKI 94          
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_ECOL6 (Valyl-tRNA synthetase OS=Escherichia coli O6 GN=valS PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 3.226e-22
Identity = 46/80 (57.50%), Postives = 58/80 (72.50%), Query Frame = 2
Query:    5 YSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            Y  WE  GYF  +   S+ SF I++PPPNVTG+LH+GHA    I DT+IR++RM G N LW  G DHAGIATQ+VVE+K+
Sbjct:   15 YEHWEKQGYFKPNGDESQESFCIMIPPPNVTGSLHMGHAFQQTIMDTMIRYQRMQGKNTLWQVGTDHAGIATQMVVERKI 94          
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_ECO57 (Valyl-tRNA synthetase OS=Escherichia coli O157:H7 GN=valS PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 3.226e-22
Identity = 46/80 (57.50%), Postives = 58/80 (72.50%), Query Frame = 2
Query:    5 YSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            Y  WE  GYF  +   S+ SF I++PPPNVTG+LH+GHA    I DT+IR++RM G N LW  G DHAGIATQ+VVE+K+
Sbjct:   15 YEHWEKQGYFKPNGDESQESFCIMIPPPNVTGSLHMGHAFQQTIMDTMIRYQRMQGKNTLWQVGTDHAGIATQMVVERKI 94          
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_NITSB (Valyl-tRNA synthetase OS=Nitratiruptor sp. (strain SB155-2) GN=valS PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 4.214e-22
Identity = 48/84 (57.14%), Postives = 59/84 (70.24%), Query Frame = 2
Query:    2 WYSWWENSGYFIADNKS---SKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            +Y  WE  GYF  D      +  +F I++PPPNVTG LHIGHALT  +QD ++R++RM GY  LW PG DHAGIATQ VVEK+L
Sbjct:   16 FYQIWETRGYFETDGNKKIQNGKTFCIMMPPPNVTGRLHIGHALTFTLQDIMVRYKRMDGYETLWQPGTDHAGIATQNVVEKQL 99          
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_BACLD (Valyl-tRNA synthetase OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=valS PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 4.214e-22
Identity = 44/80 (55.00%), Postives = 56/80 (70.00%), Query Frame = 2
Query:    5 YSWWENSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            Y +W N  +F A N   K  + +V+PPPNVTG LH+GHA  + +QD + R +RM GY+ LW+PGMDHAGIATQ  VE KL
Sbjct:   22 YDYWVNGKFFEAKNDPEKEPYTVVIPPPNVTGKLHLGHAWDSTLQDIVTRMKRMQGYDVLWLPGMDHAGIATQAKVEAKL 101          
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_TREDE (Valyl-tRNA synthetase OS=Treponema denticola GN=valS PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.503e-22
Identity = 47/81 (58.02%), Postives = 59/81 (72.84%), Query Frame = 2
Query:    5 YSWWE-NSGYFIADNKSSKPSFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            YS+WE N  +     K++K +F +V+PPPNVTG LH+GHAL   +QD I+R+ RM G   LW+PG DHAGIATQ VVEKKL
Sbjct:   24 YSFWEANKCFSPIKKKNTKNTFTVVIPPPNVTGVLHVGHALDETLQDVIVRYHRMKGDETLWIPGTDHAGIATQSVVEKKL 104          
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_RHOSK (Valyl-tRNA synthetase OS=Rhodobacter sphaeroides (strain KD131 / KCTC 12085) GN=valS PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.503e-22
Identity = 45/81 (55.56%), Postives = 60/81 (74.07%), Query Frame = 2
Query:    5 YSWWENSGYFIADNKSSKP-SFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            Y  WE +G F A   +S+P +F I++PPPNVTG+LH+GHA    +QD + RW RM G++ LW PG DHAGIATQ+VVE++L
Sbjct:   17 YDAWEKAGAFRAGANASRPETFCIMIPPPNVTGSLHMGHAFNNTLQDILTRWHRMRGFDTLWQPGQDHAGIATQMVVEREL 97          
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_RHOS4 (Valyl-tRNA synthetase OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=valS PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.503e-22
Identity = 45/81 (55.56%), Postives = 60/81 (74.07%), Query Frame = 2
Query:    5 YSWWENSGYFIADNKSSKP-SFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            Y  WE +G F A   +S+P +F I++PPPNVTG+LH+GHA    +QD + RW RM G++ LW PG DHAGIATQ+VVE++L
Sbjct:   17 YDAWEKAGAFRAGANASRPETFCIMIPPPNVTGSLHMGHAFNNTLQDILTRWHRMRGFDTLWQPGQDHAGIATQMVVEREL 97          
BLAST of CF504388 vs. ExPASy Swiss-Prot
Match: SYV_RHOS1 (Valyl-tRNA synthetase OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) GN=valS PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.503e-22
Identity = 45/81 (55.56%), Postives = 60/81 (74.07%), Query Frame = 2
Query:    5 YSWWENSGYFIADNKSSKP-SFVIVLPPPNVTGALHIGHALTTAIQDTIIRWRRMSGYNALWVPGMDHAGIATQVVVEKKL 244
            Y  WE +G F A   +S+P +F I++PPPNVTG+LH+GHA    +QD + RW RM G++ LW PG DHAGIATQ+VVE++L
Sbjct:   17 YDAWEKAGAFRAGANASRPETFCIMIPPPNVTGSLHMGHAFNNTLQDILTRWHRMRGFDTLWQPGQDHAGIATQMVVEREL 97          
The following BLAST results are available for this feature:
BLAST of CF504388 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 294
Match NameE-valueIdentityDescription
SYV_SHIBS3.226e-2257.50Valyl-tRNA synthetase OS=Shigella boydii serotype ... [more]
SYV_ECOLI3.226e-2257.50Valyl-tRNA synthetase OS=Escherichia coli (strain ... [more]
SYV_ECOL63.226e-2257.50Valyl-tRNA synthetase OS=Escherichia coli O6 GN=va... [more]
SYV_ECO573.226e-2257.50Valyl-tRNA synthetase OS=Escherichia coli O157:H7 ... [more]
SYV_NITSB4.214e-2257.14Valyl-tRNA synthetase OS=Nitratiruptor sp. (strain... [more]
SYV_BACLD4.214e-2255.00Valyl-tRNA synthetase OS=Bacillus licheniformis (s... [more]
SYV_TREDE5.503e-2258.02Valyl-tRNA synthetase OS=Treponema denticola GN=va... [more]
SYV_RHOSK5.503e-2255.56Valyl-tRNA synthetase OS=Rhodobacter sphaeroides (... [more]
SYV_RHOS45.503e-2255.56Valyl-tRNA synthetase OS=Rhodobacter sphaeroides (... [more]
SYV_RHOS15.503e-2255.56Valyl-tRNA synthetase OS=Rhodobacter sphaeroides (... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-877 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-17_G07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504388 ID=CF504388; Name=CF504388; organism=Citrus sinensis; type=EST; length=245bp
GTGGTATTCGTGGTGGGAGAACTCTGGATATTTCATTGCAGATAACAAGA
GCTCGAAGCCATCCTTTGTGATTGTTCTACCCCCACCAAATGTGACTGGT
GCCCTACATATAGGACATGCCCTCACAACAGCCATACAGGATACAATTAT
ACGTTGGAGGAGAATGTCTGGATATAATGCCTTGTGGGTACCTGGCATGG
ACCATGCTGGGATTGCAACACAGGTGGTTGTAGAGAAGAAGCTAA
back to top