CF504397

Overview
NameCF504397
Unique NameCF504397
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length449
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504397 vs. ExPASy Swiss-Prot
Match: UBE2C_DICDI (Probable ubiquitin-conjugating enzyme E2 C OS=Dictyostelium discoideum GN=ube2c PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.717e-23
Identity = 51/123 (41.46%), Postives = 76/123 (61.79%), Query Frame = 3
Query:  105 PLQEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKT--------DRSKYETTAR 449
            P  +++F+W  TI G  D+ Y    F +++ FP DYP+KPP V F T+ FHPN+++NG+ICLDILK++WSP   +  +L+SI SLL +PN + PL    A ++          D+   E T+R
Sbjct:   30 PDGDNIFNWIGTIQGAKDTVYEQMEFKMSLKFPTDYPYKPPTVKFETQCFHPNVDNNGNICLDILKDKWSPVYNVRSLLISIQSLLGEPNNESPLNSYAASLWSNQDEYKKVLDKRYQEATSR 152          
BLAST of CF504397 vs. ExPASy Swiss-Prot
Match: UB2L3_PONAB (Ubiquitin-conjugating enzyme E2 L3 OS=Pongo abelii GN=UBE2L3 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.717e-23
Identity = 45/109 (41.28%), Postives = 70/109 (64.22%), Query Frame = 3
Query:  111 QEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILK-EQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKY 434
            + ++  WQ  I+ P + PY  G F + I+FP +YPFKPPK+ F+TK++HPNI+  G +CL ++  E W PA    +V+ S+ +L+ DP P+ PL  ++A  Y  DR K+
Sbjct:   29 EANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKF 136          
BLAST of CF504397 vs. ExPASy Swiss-Prot
Match: UB2L3_MOUSE (Ubiquitin-conjugating enzyme E2 L3 OS=Mus musculus GN=Ube2l3 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.717e-23
Identity = 45/109 (41.28%), Postives = 70/109 (64.22%), Query Frame = 3
Query:  111 QEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILK-EQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKY 434
            + ++  WQ  I+ P + PY  G F + I+FP +YPFKPPK+ F+TK++HPNI+  G +CL ++  E W PA    +V+ S+ +L+ DP P+ PL  ++A  Y  DR K+
Sbjct:   29 EANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKF 136          
BLAST of CF504397 vs. ExPASy Swiss-Prot
Match: UB2L3_HUMAN (Ubiquitin-conjugating enzyme E2 L3 OS=Homo sapiens GN=UBE2L3 PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.717e-23
Identity = 45/109 (41.28%), Postives = 70/109 (64.22%), Query Frame = 3
Query:  111 QEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILK-EQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKY 434
            + ++  WQ  I+ P + PY  G F + I+FP +YPFKPPK+ F+TK++HPNI+  G +CL ++  E W PA    +V+ S+ +L+ DP P+ PL  ++A  Y  DR K+
Sbjct:   29 EANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKF 136          
BLAST of CF504397 vs. ExPASy Swiss-Prot
Match: UB2L3_BOVIN (Ubiquitin-conjugating enzyme E2 L3 OS=Bos taurus GN=UBE2L3 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.717e-23
Identity = 45/109 (41.28%), Postives = 70/109 (64.22%), Query Frame = 3
Query:  111 QEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILK-EQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKY 434
            + ++  WQ  I+ P + PY  G F + I+FP +YPFKPPK+ F+TK++HPNI+  G +CL ++  E W PA    +V+ S+ +L+ DP P+ PL  ++A  Y  DR K+
Sbjct:   29 EANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKF 136          
BLAST of CF504397 vs. ExPASy Swiss-Prot
Match: UB2G1_RAT (Ubiquitin-conjugating enzyme E2 G1 OS=Rattus norvegicus GN=Ube2g1 PE=2 SV=3)

HSP 1 Score: 107.457 bits (267), Expect = 2.717e-23
Identity = 45/117 (38.46%), Postives = 72/117 (61.54%), Query Frame = 3
Query:  117 DMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL-------------KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRS 428
            D++ W+  I+GPPD+ Y GGVF   + FP DYP +PPK+ F T+++HPN++ NG +C+ IL             +E+W P  T+  +++S+ S+L DPN D P   + A  ++ DR+
Sbjct:   34 DLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPANVDAAKEWREDRN 150          
BLAST of CF504397 vs. ExPASy Swiss-Prot
Match: UB2G1_MOUSE (Ubiquitin-conjugating enzyme E2 G1 OS=Mus musculus GN=Ube2g1 PE=2 SV=3)

HSP 1 Score: 107.457 bits (267), Expect = 2.717e-23
Identity = 45/117 (38.46%), Postives = 72/117 (61.54%), Query Frame = 3
Query:  117 DMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL-------------KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRS 428
            D++ W+  I+GPPD+ Y GGVF   + FP DYP +PPK+ F T+++HPN++ NG +C+ IL             +E+W P  T+  +++S+ S+L DPN D P   + A  ++ DR+
Sbjct:   34 DLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPANVDAAKEWREDRN 150          
BLAST of CF504397 vs. ExPASy Swiss-Prot
Match: UB2G1_HUMAN (Ubiquitin-conjugating enzyme E2 G1 OS=Homo sapiens GN=UBE2G1 PE=1 SV=3)

HSP 1 Score: 107.457 bits (267), Expect = 2.717e-23
Identity = 45/117 (38.46%), Postives = 72/117 (61.54%), Query Frame = 3
Query:  117 DMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL-------------KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRS 428
            D++ W+  I+GPPD+ Y GGVF   + FP DYP +PPK+ F T+++HPN++ NG +C+ IL             +E+W P  T+  +++S+ S+L DPN D P   + A  ++ DR+
Sbjct:   34 DLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPANVDAAKEWREDRN 150          
BLAST of CF504397 vs. ExPASy Swiss-Prot
Match: UB2G1_MACFA (Ubiquitin-conjugating enzyme E2 G1 OS=Macaca fascicularis GN=UBE2G1 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 4.634e-23
Identity = 45/117 (38.46%), Postives = 71/117 (60.68%), Query Frame = 3
Query:  117 DMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKE-------------QWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRS 428
            D++ W+  I+GPPD+ Y GGVF   + FP DYP +PPK+ F T+++HPN++ NG +C+ IL E             +W P  T+  +++S+ S+L DPN D P   + A  ++ DR+
Sbjct:   34 DLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEGRWLPIHTVETIMISVISMLADPNGDSPANVDAAKEWREDRN 150          
BLAST of CF504397 vs. ExPASy Swiss-Prot
Match: UBC11_YEAST (Ubiquitin-conjugating enzyme E2-18 kDa OS=Saccharomyces cerevisiae GN=UBC11 PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 6.052e-23
Identity = 46/106 (43.40%), Postives = 69/106 (65.09%), Query Frame = 3
Query:  117 DMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKY 434
            D+ +W   I GP D+PY+G  F V++ FP +YPF PP + F + ++HPN++ +G+ICLDILKE+WS    +  +LLS+ SLL +PN   PL    A ++  D  +Y
Sbjct:   37 DLTYWVGYITGPKDTPYSGLKFKVSLKFPQNYPFHPPMIKFLSPMWHPNVDKSGNICLDILKEKWSAVYNVETILLSLQSLLGEPNNRSPLNAVAAELWDADMEEY 142          
The following BLAST results are available for this feature:
BLAST of CF504397 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 262
Match NameE-valueIdentityDescription
UBE2C_DICDI2.717e-2341.46Probable ubiquitin-conjugating enzyme E2 C OS=Dict... [more]
UB2L3_PONAB2.717e-2341.28Ubiquitin-conjugating enzyme E2 L3 OS=Pongo abelii... [more]
UB2L3_MOUSE2.717e-2341.28Ubiquitin-conjugating enzyme E2 L3 OS=Mus musculus... [more]
UB2L3_HUMAN2.717e-2341.28Ubiquitin-conjugating enzyme E2 L3 OS=Homo sapiens... [more]
UB2L3_BOVIN2.717e-2341.28Ubiquitin-conjugating enzyme E2 L3 OS=Bos taurus G... [more]
UB2G1_RAT2.717e-2338.46Ubiquitin-conjugating enzyme E2 G1 OS=Rattus norve... [more]
UB2G1_MOUSE2.717e-2338.46Ubiquitin-conjugating enzyme E2 G1 OS=Mus musculus... [more]
UB2G1_HUMAN2.717e-2338.46Ubiquitin-conjugating enzyme E2 G1 OS=Homo sapiens... [more]
UB2G1_MACFA4.634e-2338.46Ubiquitin-conjugating enzyme E2 G1 OS=Macaca fasci... [more]
UBC11_YEAST6.052e-2343.40Ubiquitin-conjugating enzyme E2-18 kDa OS=Saccharo... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-886 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-17_H04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504397 ID=CF504397; Name=CF504397; organism=Citrus sinensis; type=EST; length=449bp
CCAGGAGGATCTCTCTCAGAGAATTAGGTTATGGCGTCGAAGCGGATCTT
GAAGGAGCTGAAGGATCTCCAGAAAGATCCTCCTACCTCTTGCAGCAGCC
GGCCCCGTTGCAGGAAGACATGTTTCATTGGCAAGCAACAATCATGGGCC
CTCCTGATAGTCCATATGCAGGCGGAGTGTTTCTAGTTACAATTCATTTT
CCTCCAGACTATCCATTTAAGCCACCTAAGGTTGCATTCAGAACAAAAGT
CTTCCATCCTAACATCAATAGCAACGGTAGCATTTGCCTTGATATATTAA
AAGAACAGTGGAGCCCTGCCCTTACCATATCAAAGGTGCTGCTTTCTATT
TGTTCACTGTTAACGGACCCGAACCCTGATGATCCATTGGTGCCAGAGAT
TGCCCACATGTACAAGACTGACCGGAGCAAGTATGAAACAACTGCGAGG
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