CF504397

Overview
NameCF504397
Unique NameCF504397
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length449
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504397 vs. ExPASy Swiss-Prot
Match: UBC_ASFM2 (Ubiquitin-conjugating enzyme E2 OS=African swine fever virus (isolate Tick/Malawi/Lil 20-1/1983) GN=UBC PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.032e-22
Identity = 51/121 (42.15%), Postives = 75/121 (61.98%), Query Frame = 3
Query:  111 QEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL-----KEQ---WSPALTISKVLLSICSLLTDPNPDDPLVPEIA-----HMYKTDRSKY 434
            ++++  W   + GPPD+ Y GG+F   I FPP YP++PP++ F ++++HPNI S+G +C+ IL     +EQ   WSPA  I  VLLS+ SLL +PNPD P   + A     ++YK D   Y
Sbjct:   27 EDNLTEWDVILKGPPDTLYEGGLFKAKIVFPPKYPYEPPRLTFTSEMWHPNIYSDGKLCISILHGDNAEEQGMTWSPAQKIDTVLLSVISLLNEPNPDSPANVDAAKSYRKYLYKEDLESY 147          
BLAST of CF504397 vs. ExPASy Swiss-Prot
Match: UBC_ASFWA (Ubiquitin-conjugating enzyme E2 OS=African swine fever virus (isolate Warthog/Namibia/Wart80/1980) GN=UBC PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 1.761e-22
Identity = 47/110 (42.73%), Postives = 69/110 (62.73%), Query Frame = 3
Query:  111 QEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL-----KEQ---WSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYK 416
            + DM  W   + GPPD+ Y GG+F   + FPP+YP+ PP++ F ++++HPNI  +G +C+ IL     +EQ   WSPA  I  +LLS+ SLL +PNPD P   + A  Y+
Sbjct:   27 ENDMTEWDVILRGPPDTLYEGGLFKAKVAFPPEYPYAPPRLTFTSEMWHPNIYPDGKLCISILHGDNAEEQGMTWSPAQKIDTILLSVISLLNEPNPDSPANVDAAKSYR 136          
BLAST of CF504397 vs. ExPASy Swiss-Prot
Match: UBC9_SCHPO (SUMO-conjugating enzyme ubc9 OS=Schizosaccharomyces pombe GN=hus5 PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 3.003e-22
Identity = 47/113 (41.59%), Postives = 70/113 (61.95%), Query Frame = 3
Query:  117 DMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQ--WSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYETTAR 449
            D+ +W+  I G P + + GG++ +T+ FP +YP +PPK  F   +FHPN+  +G++CL IL E+  W PA+TI ++LL I  LL DPN   P   E   M+K D+ +YE   R
Sbjct:   37 DLMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTPPLFHPNVYPSGTVCLSILNEEEGWKPAITIKQILLGIQDLLDDPNIASPAQTEAYTMFKKDKVEYEKRVR 149          
BLAST of CF504397 vs. ExPASy Swiss-Prot
Match: UBC21_ARATH (Probable ubiquitin carrier protein E2 21 OS=Arabidopsis thaliana GN=UBC21 PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 3.003e-22
Identity = 46/92 (50.00%), Postives = 60/92 (65.22%), Query Frame = 3
Query:  117 DMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNIN-SNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPL 389
            ++F W A I GP ++PY GGVF +    P  YP +PP+V F TK+FHPN++   G ICLDILK  WSPA T+  V  +I +L+  P PD PL
Sbjct:   33 NIFKWTALIKGPSETPYEGGVFQLAFSVPEPYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPL 124          
BLAST of CF504397 vs. ExPASy Swiss-Prot
Match: UBC11_SCHPO (Ubiquitin-conjugating enzyme E2-20 kDa OS=Schizosaccharomyces pombe GN=ubc11 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 3.003e-22
Identity = 43/107 (40.19%), Postives = 70/107 (65.42%), Query Frame = 3
Query:  117 DMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYE 437
            ++ HW  TI GP D+ Y G  F +++ FP +YP+ PP + F + ++HPN++ +G+ICLDILK++WS    +  +LLS+ SLL +PN   PL  + A ++  D  +Y+
Sbjct:   57 NLLHWAGTITGPSDTYYEGLKFKISMSFPANYPYSPPTIIFTSPMWHPNVDMSGNICLDILKDKWSAVYNVQTILLSLQSLLGEPNNASPLNAQAAELWSKDPIEYK 163          
BLAST of CF504397 vs. ExPASy Swiss-Prot
Match: UBE2T_BOVIN (Ubiquitin-conjugating enzyme E2 T OS=Bos taurus GN=UBE2T PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 3.923e-22
Identity = 55/141 (39.01%), Postives = 83/141 (58.87%), Query Frame = 3
Query:   39 EADLEGAEGSPERSSYLLQQPAPLQEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL----KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYETTAR 449
            E  L  AE  P  + +   Q     ED+   +A I+G  ++PY  GVF + +H P  YPF+PP++ F T ++HPNI+S G ICLD+L    K  W P+L I+ +L  I  L+ +PNPDDPL+ +I+  +K ++  +   AR
Sbjct:   10 ELSLLAAEPPPGITCW---QDGDRMEDL---RAQILGGANTPYEKGVFKLEVHIPERYPFEPPQIRFLTPIYHPNIDSAGRICLDVLKLPPKGAWRPSLNIATLLTCIQQLMAEPNPDDPLMADISSEFKYNKPVFFKNAR 144          
BLAST of CF504397 vs. ExPASy Swiss-Prot
Match: UBE2C_SPISO (Ubiquitin-conjugating enzyme E2 C OS=Spisula solidissima GN=UBE2C PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 3.923e-22
Identity = 47/111 (42.34%), Postives = 75/111 (67.57%), Query Frame = 3
Query:  105 PLQEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYE 437
            P  +++F W AT+ GP D+ Y    + +T+ FP DYP+KPP V F T  +HPN++ +G+ICLDILKE W+ +  +  +LLS+ SLL +PN   PL  + A M+ +++++Y+
Sbjct:   54 PDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCWHPNVDQSGNICLDILKENWTASYDVRTILLSLQSLLGEPNNASPLNAQAADMW-SNQTEYK 163          
BLAST of CF504397 vs. ExPASy Swiss-Prot
Match: UBE2T_HUMAN (Ubiquitin-conjugating enzyme E2 T OS=Homo sapiens GN=UBE2T PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 6.691e-22
Identity = 49/117 (41.88%), Postives = 76/117 (64.96%), Query Frame = 3
Query:  111 QEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL----KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYETTAR 449
            ++ M   +A I+G  ++PY  GVF + +  P  YPF+PP++ F T ++HPNI+S G ICLD+L    K  W P+L I+ VL SI  L+++PNPDDPL+ +I+  +K ++  +   AR
Sbjct:   28 KDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNIDSAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPNPDDPLMADISSEFKYNKPAFLKNAR 144          
BLAST of CF504397 vs. ExPASy Swiss-Prot
Match: UBC_ASFB7 (Ubiquitin-conjugating enzyme E2 OS=African swine fever virus (strain Badajoz 1971 Vero-adapted) GN=UBC PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 6.691e-22
Identity = 49/121 (40.50%), Postives = 73/121 (60.33%), Query Frame = 3
Query:  111 QEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL-----KEQ---WSPALTISKVLLSICSLLTDPNPDDPLVPEIA-----HMYKTDRSKY 434
            + ++  W   + GPPD+ Y GG+F   + FPP+YP+ PPK+ F ++++HPNI  +G +C+ IL     +EQ   WSPA  I  +LLS+ SLL +PNPD P   + A     ++YK D   Y
Sbjct:   27 ENNITEWDVILRGPPDTLYEGGLFKAKVAFPPEYPYAPPKLTFTSEMWHPNIYPDGRLCISILHGDNAEEQGMTWSPAQKIDTILLSVISLLNEPNPDSPANVDAAKSYRKYVYKEDLESY 147          
BLAST of CF504397 vs. ExPASy Swiss-Prot
Match: UBE2S_RANCA (Ubiquitin-conjugating enzyme E2 S OS=Rana catesbeiana GN=ube2s PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 8.739e-22
Identity = 49/115 (42.61%), Postives = 70/115 (60.87%), Query Frame = 3
Query:  105 PLQEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYETTAR 449
            P +ED+   Q +I GP  +PYAGG+F + +    D+P  PPK  F TK+FHPN++SNG IC+++LK+ W   L I  VLL+I  LL  PNP+  L  E   +   +  +Y + AR
Sbjct:   35 PNEEDITDVQVSIEGPEGTPYAGGIFRMKLILGKDFPAAPPKGYFLTKIFHPNVSSNGEICVNVLKKDWKAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYASRAR 149          
The following BLAST results are available for this feature:
BLAST of CF504397 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 262
Match NameE-valueIdentityDescription
UBC_ASFM21.032e-2242.15Ubiquitin-conjugating enzyme E2 OS=African swine f... [more]
UBC_ASFWA1.761e-2242.73Ubiquitin-conjugating enzyme E2 OS=African swine f... [more]
UBC9_SCHPO3.003e-2241.59SUMO-conjugating enzyme ubc9 OS=Schizosaccharomyce... [more]
UBC21_ARATH3.003e-2250.00Probable ubiquitin carrier protein E2 21 OS=Arabid... [more]
UBC11_SCHPO3.003e-2240.19Ubiquitin-conjugating enzyme E2-20 kDa OS=Schizosa... [more]
UBE2T_BOVIN3.923e-2239.01Ubiquitin-conjugating enzyme E2 T OS=Bos taurus GN... [more]
UBE2C_SPISO3.923e-2242.34Ubiquitin-conjugating enzyme E2 C OS=Spisula solid... [more]
UBE2T_HUMAN6.691e-2241.88Ubiquitin-conjugating enzyme E2 T OS=Homo sapiens ... [more]
UBC_ASFB76.691e-2240.50Ubiquitin-conjugating enzyme E2 OS=African swine f... [more]
UBE2S_RANCA8.739e-2242.61Ubiquitin-conjugating enzyme E2 S OS=Rana catesbei... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-886 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-17_H04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504397 ID=CF504397; Name=CF504397; organism=Citrus sinensis; type=EST; length=449bp
CCAGGAGGATCTCTCTCAGAGAATTAGGTTATGGCGTCGAAGCGGATCTT
GAAGGAGCTGAAGGATCTCCAGAAAGATCCTCCTACCTCTTGCAGCAGCC
GGCCCCGTTGCAGGAAGACATGTTTCATTGGCAAGCAACAATCATGGGCC
CTCCTGATAGTCCATATGCAGGCGGAGTGTTTCTAGTTACAATTCATTTT
CCTCCAGACTATCCATTTAAGCCACCTAAGGTTGCATTCAGAACAAAAGT
CTTCCATCCTAACATCAATAGCAACGGTAGCATTTGCCTTGATATATTAA
AAGAACAGTGGAGCCCTGCCCTTACCATATCAAAGGTGCTGCTTTCTATT
TGTTCACTGTTAACGGACCCGAACCCTGATGATCCATTGGTGCCAGAGAT
TGCCCACATGTACAAGACTGACCGGAGCAAGTATGAAACAACTGCGAGG
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