CF504397
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Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF504397 vs. ExPASy Swiss-Prot
Match: UB2E3_MOUSE (Ubiquitin-conjugating enzyme E2 E3 OS=Mus musculus GN=Ube2e3 PE=1 SV=2) HSP 1 Score: 157.147 bits (396), Expect = 2.925e-41 Identity = 73/115 (63.48%), Postives = 90/115 (78.26%), Query Frame = 3
Query: 105 PLQEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYETTAR 449
P ++++ W++TI+GPP S Y GGVF + I F DYPFKPPKV FRT+++H NINS G ICLDILK+ WSPALTISKVLLSICSLLTD NP DPLV IA Y T+R++++ AR
Sbjct: 85 PKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSSDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYLTNRAEHDRIAR 199 HSP 2 Score: 31.187 bits (69), Expect = 2.925e-41 Identity = 12/25 (48.00%), Postives = 19/25 (76.00%), Query Frame = 1
Query: 34 ASKRILKELKDLQKDPPTSCSSRPR 108
++KRI KEL ++ DPP +CS+ P+
Sbjct: 62 SAKRIQKELAEITLDPPPNCSAGPK 86
BLAST of CF504397 vs. ExPASy Swiss-Prot
Match: UB2E3_HUMAN (Ubiquitin-conjugating enzyme E2 E3 OS=Homo sapiens GN=UBE2E3 PE=1 SV=1) HSP 1 Score: 157.147 bits (396), Expect = 2.925e-41 Identity = 73/115 (63.48%), Postives = 90/115 (78.26%), Query Frame = 3
Query: 105 PLQEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYETTAR 449
P ++++ W++TI+GPP S Y GGVF + I F DYPFKPPKV FRT+++H NINS G ICLDILK+ WSPALTISKVLLSICSLLTD NP DPLV IA Y T+R++++ AR
Sbjct: 85 PKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSSDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYLTNRAEHDRIAR 199 HSP 2 Score: 31.187 bits (69), Expect = 2.925e-41 Identity = 12/25 (48.00%), Postives = 19/25 (76.00%), Query Frame = 1
Query: 34 ASKRILKELKDLQKDPPTSCSSRPR 108
++KRI KEL ++ DPP +CS+ P+
Sbjct: 62 SAKRIQKELAEITLDPPPNCSAGPK 86
BLAST of CF504397 vs. ExPASy Swiss-Prot
Match: UB2E3_BOVIN (Ubiquitin-conjugating enzyme E2 E3 OS=Bos taurus GN=UBE2E3 PE=2 SV=1) HSP 1 Score: 157.147 bits (396), Expect = 2.925e-41 Identity = 73/115 (63.48%), Postives = 90/115 (78.26%), Query Frame = 3
Query: 105 PLQEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYETTAR 449
P ++++ W++TI+GPP S Y GGVF + I F DYPFKPPKV FRT+++H NINS G ICLDILK+ WSPALTISKVLLSICSLLTD NP DPLV IA Y T+R++++ AR
Sbjct: 85 PKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSSDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYLTNRAEHDRIAR 199 HSP 2 Score: 31.187 bits (69), Expect = 2.925e-41 Identity = 12/25 (48.00%), Postives = 19/25 (76.00%), Query Frame = 1
Query: 34 ASKRILKELKDLQKDPPTSCSSRPR 108
++KRI KEL ++ DPP +CS+ P+
Sbjct: 62 SAKRIQKELAEITLDPPPNCSAGPK 86
BLAST of CF504397 vs. ExPASy Swiss-Prot
Match: UBC31_ARATH (Probable ubiquitin carrier protein E2 31 OS=Arabidopsis thaliana GN=UBC31 PE=2 SV=1) HSP 1 Score: 145.976 bits (367), Expect = 6.892e-35 Identity = 62/111 (55.86%), Postives = 84/111 (75.68%), Query Frame = 3
Query: 117 DMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYETTAR 449
+++ W A I GP +PY GG+F ++I FP DYPFKPPK F+T ++HPNIN GSIC++ILK++W+PAL + KVLLSI LL PNPDDPLVPEI ++K +R +++ AR
Sbjct: 35 NIYEWTAVIRGPDGTPYEGGMFNLSIKFPTDYPFKPPKFTFKTPIYHPNINDEGSICMNILKDKWTPALMVEKVLLSILLLLEKPNPDDPLVPEIGQLFKNNRFQFDQRAR 145
BLAST of CF504397 vs. ExPASy Swiss-Prot
Match: COP10_ARATH (Constitutive photomorphogenesis protein 10 OS=Arabidopsis thaliana GN=COP10 PE=1 SV=1) HSP 1 Score: 132.494 bits (332), Expect = 2.467e-33 Identity = 55/115 (47.83%), Postives = 84/115 (73.04%), Query Frame = 3
Query: 105 PLQEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYETTAR 449
P ++++HW ATI+GP +PY GG+F + I FP DYPFKPPK+ F+T+++H N+++ G + ++IL++ WSPALTI+KVL +I S+ P P P +P IA +Y TDR K++ A+
Sbjct: 60 PKGDNLYHWIATIIGPSGTPYEGGIFFLDIIFPSDYPFKPPKLVFKTRIYHCNVDTAGDLSVNILRDSWSPALTITKVLQAIRSIFLKPEPYSPALPVIARLYLTDREKHDEVAK 174 HSP 2 Score: 29.261 bits (64), Expect = 2.467e-33 Identity = 11/25 (44.00%), Postives = 17/25 (68.00%), Query Frame = 1
Query: 34 ASKRILKELKDLQKDPPTSCSSRPR 108
+ KRI +E+ +L DPP CS+ P+
Sbjct: 37 SGKRIQREMAELNIDPPPDCSAGPK 61
BLAST of CF504397 vs. ExPASy Swiss-Prot
Match: UBC3_ARATH (Ubiquitin-conjugating enzyme E2 3 OS=Arabidopsis thaliana GN=UBC3 PE=2 SV=1) HSP 1 Score: 128.257 bits (321), Expect = 4.531e-32 Identity = 57/111 (51.35%), Postives = 76/111 (68.47%), Query Frame = 3
Query: 102 APLQEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKY 434
AP ++ HW A I GP D+P+ GG F +T+HF DYP KPP V F +++FHPNI ++GSICLDIL+ QWSP ++ VL SI SLL DPNPD P E A ++ ++ +Y
Sbjct: 27 APQDNNIMHWNALIFGPEDTPWDGGTFKLTLHFTEDYPNKPPIVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAVLTSIQSLLCDPNPDSPANAEAARLFSENKREY 137 HSP 2 Score: 29.261 bits (64), Expect = 4.531e-32 Identity = 12/25 (48.00%), Postives = 16/25 (64.00%), Query Frame = 1
Query: 34 ASKRILKELKDLQKDPPTSCSSRPR 108
A KR++ + K LQKDPP S P+
Sbjct: 5 AKKRLMWDFKRLQKDPPVGISGAPQ 29
BLAST of CF504397 vs. ExPASy Swiss-Prot
Match: UBCD6_DROME (Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophila melanogaster GN=UbcD6 PE=2 SV=2) HSP 1 Score: 122.479 bits (306), Expect = 1.827e-30 Identity = 55/112 (49.11%), Postives = 74/112 (66.07%), Query Frame = 3
Query: 102 APLQEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYE 437
AP ++ W A I GP D+P+ G F +TI F +YP KPP V F +KVFHPN+ ++G ICLDIL+ +WSP +S +L SI SLL+DPNP+ P A +YK +R +YE
Sbjct: 27 APTDNNIMIWNAVIFGPHDTPFEDGTFKLTIEFTEEYPNKPPTVRFVSKVFHPNVYADGGICLDILQNRWSPTYDVSAILTSIQSLLSDPNPNSPANSTAAQLYKENRREYE 138 HSP 2 Score: 29.6462 bits (65), Expect = 1.827e-30 Identity = 11/24 (45.83%), Postives = 17/24 (70.83%), Query Frame = 1
Query: 34 ASKRILKELKDLQKDPPTSCSSRP 105
A +R++++ K LQ+DPPT S P
Sbjct: 5 ARRRLMRDFKRLQEDPPTGVSGAP 28
BLAST of CF504397 vs. ExPASy Swiss-Prot
Match: UBC2_WHEAT (Ubiquitin-conjugating enzyme E2 2 OS=Triticum aestivum GN=UBC2 PE=1 SV=1) HSP 1 Score: 122.479 bits (306), Expect = 3.098e-30 Identity = 56/116 (48.28%), Postives = 75/116 (64.66%), Query Frame = 3
Query: 102 APLQEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYETTAR 449
AP ++ W A I GP D+P+ GG F +T+ F DYP KPP V F +++FHPNI ++GSICLDIL+ QWSP ++ +L SI SLL DPNP+ P E A MY ++ +Y R
Sbjct: 27 APHDNNITLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMYSENKREYNRKVR 142 HSP 2 Score: 28.8758 bits (63), Expect = 3.098e-30 Identity = 11/24 (45.83%), Postives = 16/24 (66.67%), Query Frame = 1
Query: 34 ASKRILKELKDLQKDPPTSCSSRP 105
A KR++++ K LQ+DPP S P
Sbjct: 5 ARKRLMRDFKRLQQDPPAGISGAP 28
BLAST of CF504397 vs. ExPASy Swiss-Prot
Match: UBC1_ARATH (Ubiquitin-conjugating enzyme E2 1 OS=Arabidopsis thaliana GN=UBC1 PE=1 SV=1) HSP 1 Score: 121.709 bits (304), Expect = 4.034e-30 Identity = 55/116 (47.41%), Postives = 74/116 (63.79%), Query Frame = 3
Query: 102 APLQEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYETTAR 449
AP ++ W A I GP D+P+ GG F +++ F DYP KPP V F +++FHPNI ++GSICLDIL+ QWSP ++ +L SI SLL DPNP+ P E A MY + +Y R
Sbjct: 27 APQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMYSESKREYNRRVR 142 HSP 2 Score: 29.261 bits (64), Expect = 4.034e-30 Identity = 11/25 (44.00%), Postives = 17/25 (68.00%), Query Frame = 1
Query: 34 ASKRILKELKDLQKDPPTSCSSRPR 108
A KR++++ K LQ+DPP S P+
Sbjct: 5 ARKRLMRDFKRLQQDPPAGISGAPQ 29
BLAST of CF504397 vs. ExPASy Swiss-Prot
Match: UBCB_DICDI (Ubiquitin conjugating enzyme E2 B OS=Dictyostelium discoideum GN=ubcB PE=1 SV=1) HSP 1 Score: 122.094 bits (305), Expect = 8.912e-30 Identity = 57/115 (49.57%), Postives = 79/115 (68.70%), Query Frame = 3
Query: 108 LQEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNIN-SNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYETTAR 449
+ +++ W+AT+ GP SP+ GVF + I P DYPFKPP + F TK++HPNI S+G+IC ++ WSP L I VL +I S+LTDPNPD+PL EIA +KTDR+ + TA+
Sbjct: 27 VDDNLQKWKATVQGPEGSPFEKGVFSMDIDIPADYPFKPPTLKFTTKIYHPNIKTSDGAICAEVFST-WSPQLKILDVLTTIRSILTDPNPDNPLETEIAQQFKTDRNAFNKTAK 140 HSP 2 Score: 27.7202 bits (60), Expect = 8.912e-30 Identity = 11/22 (50.00%), Postives = 16/22 (72.73%), Query Frame = 1
Query: 34 ASKRILKELKDLQKDPPTSCSS 99
A KR+ KE+ D+ K PP+ CS+
Sbjct: 3 AHKRLQKEITDMLKTPPSWCSA 24 The following BLAST results are available for this feature:
BLAST of CF504397 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 262
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Sequences
The
following sequences are available for this feature:
EST sequence >CF504397 ID=CF504397; Name=CF504397; organism=Citrus sinensis; type=EST; length=449bpback to top |