CF504397

Overview
NameCF504397
Unique NameCF504397
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length449
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8980 contig Csv1_Contig8980:131..577. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504397 vs. ExPASy Swiss-Prot
Match: UBC2_ARATH (Ubiquitin-conjugating enzyme E2 2 OS=Arabidopsis thaliana GN=UBC2 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.160e-29
Identity = 54/116 (46.55%), Postives = 74/116 (63.79%), Query Frame = 3
Query:  102 APLQEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYETTAR 449
            AP   ++  W A I GP D+P+ GG F +++ F  DYP KPP V F +++FHPNI ++GSICLDIL+ QWSP   ++ +L SI SLL DPNP+ P   E A M+   + +Y    R
Sbjct:   27 APQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSESKREYNRRVR 142          

HSP 2 Score: 29.261 bits (64), Expect = 1.160e-29
Identity = 11/25 (44.00%), Postives = 17/25 (68.00%), Query Frame = 1
Query:   34 ASKRILKELKDLQKDPPTSCSSRPR 108
            A KR++++ K LQ+DPP   S  P+
Sbjct:    5 ARKRLMRDFKRLQQDPPAGISGAPQ 29          
BLAST of CF504397 vs. ExPASy Swiss-Prot
Match: UBC2_MEDSA (Ubiquitin-conjugating enzyme E2 2 OS=Medicago sativa GN=UBC2 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.510e-29
Identity = 54/116 (46.55%), Postives = 75/116 (64.66%), Query Frame = 3
Query:  102 APLQEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYETTAR 449
            AP   ++  W A I GP D+P+ GG F +++ F  DYP KPP V F +++FHPNI ++GSICLDIL+ QWSP   ++ +L SI SLL DPNP+ P   E A M+  ++ +Y    R
Sbjct:   27 APQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVR 142          

HSP 2 Score: 28.4906 bits (62), Expect = 1.510e-29
Identity = 11/25 (44.00%), Postives = 16/25 (64.00%), Query Frame = 1
Query:   34 ASKRILKELKDLQKDPPTSCSSRPR 108
            A KR++++ K LQ DPP   S  P+
Sbjct:    5 ARKRLMRDFKRLQHDPPAGISGAPQ 29          
BLAST of CF504397 vs. ExPASy Swiss-Prot
Match: UBC14_SCHPO (Ubiquitin-conjugating enzyme E2 14 OS=Schizosaccharomyces pombe GN=ubc14 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 1.942e-29
Identity = 59/130 (45.38%), Postives = 84/130 (64.62%), Query Frame = 3
Query:   81 SYLLQQPAP------LQEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQ-WSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYETTAR 449
            S L + P P      + +++FHW  T +GP DS YAGG F  ++ FP DYPF+PP + F T+++HPN +S G++CL ILK+Q + P++ +  VL  I  LL +PNPDDPLV  IA  Y+ DR  ++  AR
Sbjct:   17 SDLREHPIPDIRVNLVDDNLFHWACTALGPSDSVYAGGKFHFSLKFPLDYPFQPPTIEFTTRIYHPNFDSEGNVCLAILKQQVFKPSIKLRSVLEQILQLLREPNPDDPLVASIAEQYRNDRPSFDKIAR 146          
BLAST of CF504397 vs. ExPASy Swiss-Prot
Match: UBC36_ARATH (Ubiquitin carrier protein E2 36 OS=Arabidopsis thaliana GN=UBC36 PE=1 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 4.327e-29
Identity = 63/127 (49.61%), Postives = 85/127 (66.93%), Query Frame = 3
Query:   87 LLQQPAP------LQEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYETTAR 449
            LL +PAP       +E+M ++   I+GP  SPY GGVF + +  P +YP   PKV F TK++HPNI+  G ICLDILK++WSPAL I  VLLSI +LL+ PNPDDPL   IA  +K++ ++   TA+
Sbjct:   17 LLSEPAPGISASPSEENMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKSNEAEAVETAK 143          
BLAST of CF504397 vs. ExPASy Swiss-Prot
Match: UBC1_YEAST (Ubiquitin-conjugating enzyme E2-24 kDa OS=Saccharomyces cerevisiae GN=UBC1 PE=1 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 5.608e-29
Identity = 57/113 (50.44%), Postives = 76/113 (67.26%), Query Frame = 3
Query:  111 QEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINS-NGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYETTA 446
            + D+ H + T +GPP +PY GG F+V I  P +YPFKPPK+ F TKV+HPNI+S  G+ICLDILK  WSP +T+   L+S+ +LL  P P+DP   E+A  Y  DR  +  TA
Sbjct:   29 ESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVTGAICLDILKNAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHYLRDRESFNKTA 141          

HSP 2 Score: 20.7866 bits (42), Expect = 5.608e-29
Identity = 7/15 (46.67%), Postives = 13/15 (86.67%), Query Frame = 1
Query:   37 SKRILKELKDLQKDP 81
            +KRI+KE++ ++ DP
Sbjct:    4 AKRIMKEIQAVKDDP 18          
BLAST of CF504397 vs. ExPASy Swiss-Prot
Match: UBC35_ARATH (Ubiquitin carrier protein E2 35 OS=Arabidopsis thaliana GN=UBC35 PE=1 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 9.639e-29
Identity = 62/127 (48.82%), Postives = 85/127 (66.93%), Query Frame = 3
Query:   87 LLQQPAP------LQEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYETTAR 449
            LL +PAP       +++M ++   I+GP  SPY GGVF + +  P +YP   PKV F TK++HPNI+  G ICLDILK++WSPAL I  VLLSI +LL+ PNPDDPL   IA  +K++ ++   TA+
Sbjct:   17 LLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKSNEAEAVDTAK 143          
BLAST of CF504397 vs. ExPASy Swiss-Prot
Match: UBE2A_MOUSE (Ubiquitin-conjugating enzyme E2 A OS=Mus musculus GN=Ube2a PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 2.115e-28
Identity = 51/112 (45.54%), Postives = 75/112 (66.96%), Query Frame = 3
Query:  102 APLQEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYE 437
            AP + ++  W A I GP  +P+  G F +TI F  +YP KPP V F +K+FHPN+ ++GSICLDIL+ +WSP   +S +L SI SLL +PNP+ P   + A +Y+ ++ +YE
Sbjct:   27 APSENNIMVWNAVIFGPEGTPFEDGTFKLTIEFTEEYPNKPPTVRFVSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYE 138          

HSP 2 Score: 27.7202 bits (60), Expect = 2.115e-28
Identity = 10/24 (41.67%), Postives = 16/24 (66.67%), Query Frame = 1
Query:   34 ASKRILKELKDLQKDPPTSCSSRP 105
            A +R++++ K LQ+DPP   S  P
Sbjct:    5 ARRRLMRDFKRLQEDPPAGVSGAP 28          
BLAST of CF504397 vs. ExPASy Swiss-Prot
Match: UBE2A_HUMAN (Ubiquitin-conjugating enzyme E2 A OS=Homo sapiens GN=UBE2A PE=2 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 2.115e-28
Identity = 51/112 (45.54%), Postives = 75/112 (66.96%), Query Frame = 3
Query:  102 APLQEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYE 437
            AP + ++  W A I GP  +P+  G F +TI F  +YP KPP V F +K+FHPN+ ++GSICLDIL+ +WSP   +S +L SI SLL +PNP+ P   + A +Y+ ++ +YE
Sbjct:   27 APSENNIMVWNAVIFGPEGTPFEDGTFKLTIEFTEEYPNKPPTVRFVSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYE 138          

HSP 2 Score: 27.7202 bits (60), Expect = 2.115e-28
Identity = 10/24 (41.67%), Postives = 16/24 (66.67%), Query Frame = 1
Query:   34 ASKRILKELKDLQKDPPTSCSSRP 105
            A +R++++ K LQ+DPP   S  P
Sbjct:    5 ARRRLMRDFKRLQEDPPAGVSGAP 28          
BLAST of CF504397 vs. ExPASy Swiss-Prot
Match: UBE2N_MACFA (Ubiquitin-conjugating enzyme E2 N OS=Macaca fascicularis GN=UBE2N PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 2.147e-28
Identity = 56/115 (48.70%), Postives = 79/115 (68.70%), Query Frame = 3
Query:  105 PLQEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYETTAR 449
            P + +  ++   I GP DSP+ GG F + +  P +YP   PKV F TK++HPN++ +G ICLDILK++WSPAL I  VLLSI +LL+ PNPDDPL  ++A  +KT+ ++   TAR
Sbjct:   27 PDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKSGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETAR 141          
BLAST of CF504397 vs. ExPASy Swiss-Prot
Match: UBE2B_RAT (Ubiquitin-conjugating enzyme E2 B OS=Rattus norvegicus GN=Ube2b PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 2.753e-28
Identity = 50/112 (44.64%), Postives = 74/112 (66.07%), Query Frame = 3
Query:  102 APLQEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYE 437
            AP + ++  W A I GP  +P+  G F + I F  +YP KPP V F +K+FHPN+ ++GSICLDIL+ +WSP   +S +L SI SLL +PNP+ P   + A +Y+ ++ +YE
Sbjct:   27 APSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYE 138          

HSP 2 Score: 27.7202 bits (60), Expect = 2.753e-28
Identity = 10/24 (41.67%), Postives = 16/24 (66.67%), Query Frame = 1
Query:   34 ASKRILKELKDLQKDPPTSCSSRP 105
            A +R++++ K LQ+DPP   S  P
Sbjct:    5 ARRRLMRDFKRLQEDPPVGVSGAP 28          
The following BLAST results are available for this feature:
BLAST of CF504397 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 262
Match NameE-valueIdentityDescription
UBC2_ARATH1.160e-2946.55Ubiquitin-conjugating enzyme E2 2 OS=Arabidopsis t... [more]
UBC2_MEDSA1.510e-2946.55Ubiquitin-conjugating enzyme E2 2 OS=Medicago sati... [more]
UBC14_SCHPO1.942e-2945.38Ubiquitin-conjugating enzyme E2 14 OS=Schizosaccha... [more]
UBC36_ARATH4.327e-2949.61Ubiquitin carrier protein E2 36 OS=Arabidopsis tha... [more]
UBC1_YEAST5.608e-2950.44Ubiquitin-conjugating enzyme E2-24 kDa OS=Saccharo... [more]
UBC35_ARATH9.639e-2948.82Ubiquitin carrier protein E2 35 OS=Arabidopsis tha... [more]
UBE2A_MOUSE2.115e-2845.54Ubiquitin-conjugating enzyme E2 A OS=Mus musculus ... [more]
UBE2A_HUMAN2.115e-2845.54Ubiquitin-conjugating enzyme E2 A OS=Homo sapiens ... [more]
UBE2N_MACFA2.147e-2848.70Ubiquitin-conjugating enzyme E2 N OS=Macaca fascic... [more]
UBE2B_RAT2.753e-2844.64Ubiquitin-conjugating enzyme E2 B OS=Rattus norveg... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-886 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-17_H04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504397 ID=CF504397; Name=CF504397; organism=Citrus sinensis; type=EST; length=449bp
CCAGGAGGATCTCTCTCAGAGAATTAGGTTATGGCGTCGAAGCGGATCTT
GAAGGAGCTGAAGGATCTCCAGAAAGATCCTCCTACCTCTTGCAGCAGCC
GGCCCCGTTGCAGGAAGACATGTTTCATTGGCAAGCAACAATCATGGGCC
CTCCTGATAGTCCATATGCAGGCGGAGTGTTTCTAGTTACAATTCATTTT
CCTCCAGACTATCCATTTAAGCCACCTAAGGTTGCATTCAGAACAAAAGT
CTTCCATCCTAACATCAATAGCAACGGTAGCATTTGCCTTGATATATTAA
AAGAACAGTGGAGCCCTGCCCTTACCATATCAAAGGTGCTGCTTTCTATT
TGTTCACTGTTAACGGACCCGAACCCTGATGATCCATTGGTGCCAGAGAT
TGCCCACATGTACAAGACTGACCGGAGCAAGTATGAAACAACTGCGAGG
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