CF504397
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF504397 vs. ExPASy Swiss-Prot
Match: UBC2_ARATH (Ubiquitin-conjugating enzyme E2 2 OS=Arabidopsis thaliana GN=UBC2 PE=2 SV=1) HSP 1 Score: 120.168 bits (300), Expect = 1.160e-29 Identity = 54/116 (46.55%), Postives = 74/116 (63.79%), Query Frame = 3 Query: 102 APLQEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYETTAR 449 AP ++ W A I GP D+P+ GG F +++ F DYP KPP V F +++FHPNI ++GSICLDIL+ QWSP ++ +L SI SLL DPNP+ P E A M+ + +Y R Sbjct: 27 APQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSESKREYNRRVR 142 HSP 2 Score: 29.261 bits (64), Expect = 1.160e-29 Identity = 11/25 (44.00%), Postives = 17/25 (68.00%), Query Frame = 1 Query: 34 ASKRILKELKDLQKDPPTSCSSRPR 108 A KR++++ K LQ+DPP S P+ Sbjct: 5 ARKRLMRDFKRLQQDPPAGISGAPQ 29
BLAST of CF504397 vs. ExPASy Swiss-Prot
Match: UBC2_MEDSA (Ubiquitin-conjugating enzyme E2 2 OS=Medicago sativa GN=UBC2 PE=2 SV=1) HSP 1 Score: 120.553 bits (301), Expect = 1.510e-29 Identity = 54/116 (46.55%), Postives = 75/116 (64.66%), Query Frame = 3 Query: 102 APLQEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYETTAR 449 AP ++ W A I GP D+P+ GG F +++ F DYP KPP V F +++FHPNI ++GSICLDIL+ QWSP ++ +L SI SLL DPNP+ P E A M+ ++ +Y R Sbjct: 27 APQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVR 142 HSP 2 Score: 28.4906 bits (62), Expect = 1.510e-29 Identity = 11/25 (44.00%), Postives = 16/25 (64.00%), Query Frame = 1 Query: 34 ASKRILKELKDLQKDPPTSCSSRPR 108 A KR++++ K LQ DPP S P+ Sbjct: 5 ARKRLMRDFKRLQHDPPAGISGAPQ 29
BLAST of CF504397 vs. ExPASy Swiss-Prot
Match: UBC14_SCHPO (Ubiquitin-conjugating enzyme E2 14 OS=Schizosaccharomyces pombe GN=ubc14 PE=2 SV=1) HSP 1 Score: 127.872 bits (320), Expect = 1.942e-29 Identity = 59/130 (45.38%), Postives = 84/130 (64.62%), Query Frame = 3 Query: 81 SYLLQQPAP------LQEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQ-WSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYETTAR 449 S L + P P + +++FHW T +GP DS YAGG F ++ FP DYPF+PP + F T+++HPN +S G++CL ILK+Q + P++ + VL I LL +PNPDDPLV IA Y+ DR ++ AR Sbjct: 17 SDLREHPIPDIRVNLVDDNLFHWACTALGPSDSVYAGGKFHFSLKFPLDYPFQPPTIEFTTRIYHPNFDSEGNVCLAILKQQVFKPSIKLRSVLEQILQLLREPNPDDPLVASIAEQYRNDRPSFDKIAR 146
BLAST of CF504397 vs. ExPASy Swiss-Prot
Match: UBC36_ARATH (Ubiquitin carrier protein E2 36 OS=Arabidopsis thaliana GN=UBC36 PE=1 SV=1) HSP 1 Score: 126.716 bits (317), Expect = 4.327e-29 Identity = 63/127 (49.61%), Postives = 85/127 (66.93%), Query Frame = 3 Query: 87 LLQQPAP------LQEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYETTAR 449 LL +PAP +E+M ++ I+GP SPY GGVF + + P +YP PKV F TK++HPNI+ G ICLDILK++WSPAL I VLLSI +LL+ PNPDDPL IA +K++ ++ TA+ Sbjct: 17 LLSEPAPGISASPSEENMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKSNEAEAVETAK 143
BLAST of CF504397 vs. ExPASy Swiss-Prot
Match: UBC1_YEAST (Ubiquitin-conjugating enzyme E2-24 kDa OS=Saccharomyces cerevisiae GN=UBC1 PE=1 SV=1) HSP 1 Score: 126.331 bits (316), Expect = 5.608e-29 Identity = 57/113 (50.44%), Postives = 76/113 (67.26%), Query Frame = 3 Query: 111 QEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINS-NGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYETTA 446 + D+ H + T +GPP +PY GG F+V I P +YPFKPPK+ F TKV+HPNI+S G+ICLDILK WSP +T+ L+S+ +LL P P+DP E+A Y DR + TA Sbjct: 29 ESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVTGAICLDILKNAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHYLRDRESFNKTA 141 HSP 2 Score: 20.7866 bits (42), Expect = 5.608e-29 Identity = 7/15 (46.67%), Postives = 13/15 (86.67%), Query Frame = 1 Query: 37 SKRILKELKDLQKDP 81 +KRI+KE++ ++ DP Sbjct: 4 AKRIMKEIQAVKDDP 18
BLAST of CF504397 vs. ExPASy Swiss-Prot
Match: UBC35_ARATH (Ubiquitin carrier protein E2 35 OS=Arabidopsis thaliana GN=UBC35 PE=1 SV=1) HSP 1 Score: 125.561 bits (314), Expect = 9.639e-29 Identity = 62/127 (48.82%), Postives = 85/127 (66.93%), Query Frame = 3 Query: 87 LLQQPAP------LQEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYETTAR 449 LL +PAP +++M ++ I+GP SPY GGVF + + P +YP PKV F TK++HPNI+ G ICLDILK++WSPAL I VLLSI +LL+ PNPDDPL IA +K++ ++ TA+ Sbjct: 17 LLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKSNEAEAVDTAK 143
BLAST of CF504397 vs. ExPASy Swiss-Prot
Match: UBE2A_MOUSE (Ubiquitin-conjugating enzyme E2 A OS=Mus musculus GN=Ube2a PE=2 SV=1) HSP 1 Score: 117.472 bits (293), Expect = 2.115e-28 Identity = 51/112 (45.54%), Postives = 75/112 (66.96%), Query Frame = 3 Query: 102 APLQEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYE 437 AP + ++ W A I GP +P+ G F +TI F +YP KPP V F +K+FHPN+ ++GSICLDIL+ +WSP +S +L SI SLL +PNP+ P + A +Y+ ++ +YE Sbjct: 27 APSENNIMVWNAVIFGPEGTPFEDGTFKLTIEFTEEYPNKPPTVRFVSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYE 138 HSP 2 Score: 27.7202 bits (60), Expect = 2.115e-28 Identity = 10/24 (41.67%), Postives = 16/24 (66.67%), Query Frame = 1 Query: 34 ASKRILKELKDLQKDPPTSCSSRP 105 A +R++++ K LQ+DPP S P Sbjct: 5 ARRRLMRDFKRLQEDPPAGVSGAP 28
BLAST of CF504397 vs. ExPASy Swiss-Prot
Match: UBE2A_HUMAN (Ubiquitin-conjugating enzyme E2 A OS=Homo sapiens GN=UBE2A PE=2 SV=2) HSP 1 Score: 117.472 bits (293), Expect = 2.115e-28 Identity = 51/112 (45.54%), Postives = 75/112 (66.96%), Query Frame = 3 Query: 102 APLQEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYE 437 AP + ++ W A I GP +P+ G F +TI F +YP KPP V F +K+FHPN+ ++GSICLDIL+ +WSP +S +L SI SLL +PNP+ P + A +Y+ ++ +YE Sbjct: 27 APSENNIMVWNAVIFGPEGTPFEDGTFKLTIEFTEEYPNKPPTVRFVSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYE 138 HSP 2 Score: 27.7202 bits (60), Expect = 2.115e-28 Identity = 10/24 (41.67%), Postives = 16/24 (66.67%), Query Frame = 1 Query: 34 ASKRILKELKDLQKDPPTSCSSRP 105 A +R++++ K LQ+DPP S P Sbjct: 5 ARRRLMRDFKRLQEDPPAGVSGAP 28
BLAST of CF504397 vs. ExPASy Swiss-Prot
Match: UBE2N_MACFA (Ubiquitin-conjugating enzyme E2 N OS=Macaca fascicularis GN=UBE2N PE=2 SV=1) HSP 1 Score: 124.405 bits (311), Expect = 2.147e-28 Identity = 56/115 (48.70%), Postives = 79/115 (68.70%), Query Frame = 3 Query: 105 PLQEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYETTAR 449 P + + ++ I GP DSP+ GG F + + P +YP PKV F TK++HPN++ +G ICLDILK++WSPAL I VLLSI +LL+ PNPDDPL ++A +KT+ ++ TAR Sbjct: 27 PDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKSGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETAR 141
BLAST of CF504397 vs. ExPASy Swiss-Prot
Match: UBE2B_RAT (Ubiquitin-conjugating enzyme E2 B OS=Rattus norvegicus GN=Ube2b PE=2 SV=1) HSP 1 Score: 117.087 bits (292), Expect = 2.753e-28 Identity = 50/112 (44.64%), Postives = 74/112 (66.07%), Query Frame = 3 Query: 102 APLQEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYE 437 AP + ++ W A I GP +P+ G F + I F +YP KPP V F +K+FHPN+ ++GSICLDIL+ +WSP +S +L SI SLL +PNP+ P + A +Y+ ++ +YE Sbjct: 27 APSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYE 138 HSP 2 Score: 27.7202 bits (60), Expect = 2.753e-28 Identity = 10/24 (41.67%), Postives = 16/24 (66.67%), Query Frame = 1 Query: 34 ASKRILKELKDLQKDPPTSCSSRP 105 A +R++++ K LQ+DPP S P Sbjct: 5 ARRRLMRDFKRLQEDPPVGVSGAP 28 The following BLAST results are available for this feature:
BLAST of CF504397 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 262
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Sequences
The
following sequences are available for this feature:
EST sequence >CF504397 ID=CF504397; Name=CF504397; organism=Citrus sinensis; type=EST; length=449bpback to top |