CF504397

Overview
NameCF504397
Unique NameCF504397
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length449
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504397 vs. ExPASy Swiss-Prot
Match: UBE2B_RABIT (Ubiquitin-conjugating enzyme E2 B OS=Oryctolagus cuniculus GN=UBE2B PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 2.753e-28
Identity = 50/112 (44.64%), Postives = 74/112 (66.07%), Query Frame = 3
Query:  102 APLQEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYE 437
            AP + ++  W A I GP  +P+  G F + I F  +YP KPP V F +K+FHPN+ ++GSICLDIL+ +WSP   +S +L SI SLL +PNP+ P   + A +Y+ ++ +YE
Sbjct:   27 APSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYE 138          

HSP 2 Score: 27.7202 bits (60), Expect = 2.753e-28
Identity = 10/24 (41.67%), Postives = 16/24 (66.67%), Query Frame = 1
Query:   34 ASKRILKELKDLQKDPPTSCSSRP 105
            A +R++++ K LQ+DPP   S  P
Sbjct:    5 ARRRLMRDFKRLQEDPPVGVSGAP 28          
BLAST of CF504397 vs. ExPASy Swiss-Prot
Match: UBE2B_MOUSE (Ubiquitin-conjugating enzyme E2 B OS=Mus musculus GN=Ube2b PE=1 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 2.753e-28
Identity = 50/112 (44.64%), Postives = 74/112 (66.07%), Query Frame = 3
Query:  102 APLQEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYE 437
            AP + ++  W A I GP  +P+  G F + I F  +YP KPP V F +K+FHPN+ ++GSICLDIL+ +WSP   +S +L SI SLL +PNP+ P   + A +Y+ ++ +YE
Sbjct:   27 APSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYE 138          

HSP 2 Score: 27.7202 bits (60), Expect = 2.753e-28
Identity = 10/24 (41.67%), Postives = 16/24 (66.67%), Query Frame = 1
Query:   34 ASKRILKELKDLQKDPPTSCSSRP 105
            A +R++++ K LQ+DPP   S  P
Sbjct:    5 ARRRLMRDFKRLQEDPPVGVSGAP 28          
BLAST of CF504397 vs. ExPASy Swiss-Prot
Match: UBE2B_HUMAN (Ubiquitin-conjugating enzyme E2 B OS=Homo sapiens GN=UBE2B PE=1 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 2.753e-28
Identity = 50/112 (44.64%), Postives = 74/112 (66.07%), Query Frame = 3
Query:  102 APLQEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYE 437
            AP + ++  W A I GP  +P+  G F + I F  +YP KPP V F +K+FHPN+ ++GSICLDIL+ +WSP   +S +L SI SLL +PNP+ P   + A +Y+ ++ +YE
Sbjct:   27 APSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYE 138          

HSP 2 Score: 27.7202 bits (60), Expect = 2.753e-28
Identity = 10/24 (41.67%), Postives = 16/24 (66.67%), Query Frame = 1
Query:   34 ASKRILKELKDLQKDPPTSCSSRP 105
            A +R++++ K LQ+DPP   S  P
Sbjct:    5 ARRRLMRDFKRLQEDPPVGVSGAP 28          
BLAST of CF504397 vs. ExPASy Swiss-Prot
Match: UBE2B_BOVIN (Ubiquitin-conjugating enzyme E2 B OS=Bos taurus GN=UBE2B PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 2.753e-28
Identity = 50/112 (44.64%), Postives = 74/112 (66.07%), Query Frame = 3
Query:  102 APLQEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYE 437
            AP + ++  W A I GP  +P+  G F + I F  +YP KPP V F +K+FHPN+ ++GSICLDIL+ +WSP   +S +L SI SLL +PNP+ P   + A +Y+ ++ +YE
Sbjct:   27 APSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYE 138          

HSP 2 Score: 27.7202 bits (60), Expect = 2.753e-28
Identity = 10/24 (41.67%), Postives = 16/24 (66.67%), Query Frame = 1
Query:   34 ASKRILKELKDLQKDPPTSCSSRP 105
            A +R++++ K LQ+DPP   S  P
Sbjct:    5 ARRRLMRDFKRLQEDPPVGVSGAP 28          
BLAST of CF504397 vs. ExPASy Swiss-Prot
Match: UBE2N_PONAB (Ubiquitin-conjugating enzyme E2 N OS=Pongo abelii GN=UBE2N PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 6.248e-28
Identity = 56/115 (48.70%), Postives = 78/115 (67.83%), Query Frame = 3
Query:  105 PLQEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYETTAR 449
            P + +  ++   I GP DSP+ GG F + +  P +YP   PKV F TK++HPN++  G ICLDILK++WSPAL I  VLLSI +LL+ PNPDDPL  ++A  +KT+ ++   TAR
Sbjct:   27 PDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETAR 141          
BLAST of CF504397 vs. ExPASy Swiss-Prot
Match: UBE2N_MOUSE (Ubiquitin-conjugating enzyme E2 N OS=Mus musculus GN=Ube2n PE=1 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 6.248e-28
Identity = 56/115 (48.70%), Postives = 78/115 (67.83%), Query Frame = 3
Query:  105 PLQEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYETTAR 449
            P + +  ++   I GP DSP+ GG F + +  P +YP   PKV F TK++HPN++  G ICLDILK++WSPAL I  VLLSI +LL+ PNPDDPL  ++A  +KT+ ++   TAR
Sbjct:   27 PDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETAR 141          
BLAST of CF504397 vs. ExPASy Swiss-Prot
Match: UBE2N_HUMAN (Ubiquitin-conjugating enzyme E2 N OS=Homo sapiens GN=UBE2N PE=1 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 6.248e-28
Identity = 56/115 (48.70%), Postives = 78/115 (67.83%), Query Frame = 3
Query:  105 PLQEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYETTAR 449
            P + +  ++   I GP DSP+ GG F + +  P +YP   PKV F TK++HPN++  G ICLDILK++WSPAL I  VLLSI +LL+ PNPDDPL  ++A  +KT+ ++   TAR
Sbjct:   27 PDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETAR 141          
BLAST of CF504397 vs. ExPASy Swiss-Prot
Match: UBE2N_BOVIN (Ubiquitin-conjugating enzyme E2 N OS=Bos taurus GN=UBE2N PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 6.248e-28
Identity = 56/115 (48.70%), Postives = 78/115 (67.83%), Query Frame = 3
Query:  105 PLQEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYETTAR 449
            P + +  ++   I GP DSP+ GG F + +  P +YP   PKV F TK++HPN++  G ICLDILK++WSPAL I  VLLSI +LL+ PNPDDPL  ++A  +KT+ ++   TAR
Sbjct:   27 PDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETAR 141          
BLAST of CF504397 vs. ExPASy Swiss-Prot
Match: UBC1_CAEEL (Ubiquitin-conjugating enzyme E2 1 OS=Caenorhabditis elegans GN=ubc-1 PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.024e-27
Identity = 49/112 (43.75%), Postives = 77/112 (68.75%), Query Frame = 3
Query:  102 APLQEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYE 437
            AP ++++  W+A I GP ++P+  G F +++ F  +YP KPP V F +K+FHPN+ ++GSICLDIL+ +WSP   ++ +L SI SLL +PNP+ P     A +Y+ +R +YE
Sbjct:   27 APTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKPPTVKFISKMFHPNVYADGSICLDILQNRWSPTYDVAAILTSIQSLLDEPNPNSPANSLAAQLYQENRREYE 138          

HSP 2 Score: 26.9498 bits (58), Expect = 1.024e-27
Identity = 9/22 (40.91%), Postives = 15/22 (68.18%), Query Frame = 1
Query:   40 KRILKELKDLQKDPPTSCSSRP 105
            +R++++ K LQ+DPP   S  P
Sbjct:    7 RRLMRDFKKLQEDPPAGVSGAP 28          
BLAST of CF504397 vs. ExPASy Swiss-Prot
Match: UBE2N_DROME (Ubiquitin-conjugating enzyme E2 N OS=Drosophila melanogaster GN=ben PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.392e-27
Identity = 57/127 (44.88%), Postives = 83/127 (65.35%), Query Frame = 3
Query:   87 LLQQPAPL------QEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYETTAR 449
            L+Q+P P       + +  ++   + GP DSP+ GGVF + +  P DYP   PKV F TK++HPNI+  G ICLD+LK++WSPAL I  +LLSI +LL+ PNPDDPL  ++A ++K + ++    AR
Sbjct:   15 LMQEPVPGINAIPDENNARYFHVIVTGPNDSPFEGGVFKLELFLPEDYPMSAPKVRFITKIYHPNIDRLGRICLDVLKDKWSPALQIRTILLSIQALLSAPNPDDPLANDVAELWKVNEAEAIRNAR 141          
The following BLAST results are available for this feature:
BLAST of CF504397 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 262
Match NameE-valueIdentityDescription
UBE2B_RABIT2.753e-2844.64Ubiquitin-conjugating enzyme E2 B OS=Oryctolagus c... [more]
UBE2B_MOUSE2.753e-2844.64Ubiquitin-conjugating enzyme E2 B OS=Mus musculus ... [more]
UBE2B_HUMAN2.753e-2844.64Ubiquitin-conjugating enzyme E2 B OS=Homo sapiens ... [more]
UBE2B_BOVIN2.753e-2844.64Ubiquitin-conjugating enzyme E2 B OS=Bos taurus GN... [more]
UBE2N_PONAB6.248e-2848.70Ubiquitin-conjugating enzyme E2 N OS=Pongo abelii ... [more]
UBE2N_MOUSE6.248e-2848.70Ubiquitin-conjugating enzyme E2 N OS=Mus musculus ... [more]
UBE2N_HUMAN6.248e-2848.70Ubiquitin-conjugating enzyme E2 N OS=Homo sapiens ... [more]
UBE2N_BOVIN6.248e-2848.70Ubiquitin-conjugating enzyme E2 N OS=Bos taurus GN... [more]
UBC1_CAEEL1.024e-2743.75Ubiquitin-conjugating enzyme E2 1 OS=Caenorhabditi... [more]
UBE2N_DROME1.392e-2744.88Ubiquitin-conjugating enzyme E2 N OS=Drosophila me... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-886 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-17_H04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504397 ID=CF504397; Name=CF504397; organism=Citrus sinensis; type=EST; length=449bp
CCAGGAGGATCTCTCTCAGAGAATTAGGTTATGGCGTCGAAGCGGATCTT
GAAGGAGCTGAAGGATCTCCAGAAAGATCCTCCTACCTCTTGCAGCAGCC
GGCCCCGTTGCAGGAAGACATGTTTCATTGGCAAGCAACAATCATGGGCC
CTCCTGATAGTCCATATGCAGGCGGAGTGTTTCTAGTTACAATTCATTTT
CCTCCAGACTATCCATTTAAGCCACCTAAGGTTGCATTCAGAACAAAAGT
CTTCCATCCTAACATCAATAGCAACGGTAGCATTTGCCTTGATATATTAA
AAGAACAGTGGAGCCCTGCCCTTACCATATCAAAGGTGCTGCTTTCTATT
TGTTCACTGTTAACGGACCCGAACCCTGATGATCCATTGGTGCCAGAGAT
TGCCCACATGTACAAGACTGACCGGAGCAAGTATGAAACAACTGCGAGG
back to top