CF504397

Overview
NameCF504397
Unique NameCF504397
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length449
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8980 contig Csv1_Contig8980:131..577. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504397 vs. ExPASy Swiss-Prot
Match: UBC2_CANAL (Ubiquitin-conjugating enzyme E2 2 OS=Candida albicans GN=UBC2 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.738e-27
Identity = 50/116 (43.10%), Postives = 74/116 (63.79%), Query Frame = 3
Query:  102 APLQEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYETTAR 449
            +PL +++  W A I+GP D+P+  G F + + F   YP KPP+V F +++FHPN+ ++G +CLDIL+ +WSP   +S +L S+ SLL DPN   P   E A++YK  RS Y    R
Sbjct:   27 SPLPDNVMKWNAVIIGPSDTPFEDGTFRLLLSFDEQYPNKPPQVKFISEMFHPNVYASGELCLDILQNRWSPTYDVSSILTSVQSLLNDPNISSPANVEAANLYKDHRSLYVKRVR 142          

HSP 2 Score: 27.7202 bits (60), Expect = 1.738e-27
Identity = 9/24 (37.50%), Postives = 18/24 (75.00%), Query Frame = 1
Query:   34 ASKRILKELKDLQKDPPTSCSSRP 105
            A +R++++ K +Q+DPP+  S+ P
Sbjct:    5 ARRRLMRDFKRMQQDPPSGVSASP 28          
BLAST of CF504397 vs. ExPASy Swiss-Prot
Match: UBE2N_RAT (Ubiquitin-conjugating enzyme E2 N OS=Rattus norvegicus GN=Ube2n PE=1 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.818e-27
Identity = 55/115 (47.83%), Postives = 78/115 (67.83%), Query Frame = 3
Query:  105 PLQEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYETTAR 449
            P + +  ++   I GP DSP+ GG F + +  P +YP   PKV F TK++HPN++  G ICLDILK++WSPAL I  VLLSI +LL+ PNPDDPL  ++A  +K++ ++   TAR
Sbjct:   27 PDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKSNEAQAIETAR 141          
BLAST of CF504397 vs. ExPASy Swiss-Prot
Match: UBE2N_DICDI (Probable ubiquitin-conjugating enzyme E2 N OS=Dictyostelium discoideum GN=ube2n PE=3 SV=2)

HSP 1 Score: 121.324 bits (303), Expect = 1.818e-27
Identity = 60/127 (47.24%), Postives = 82/127 (64.57%), Query Frame = 3
Query:   87 LLQQPAP------LQEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYETTAR 449
            L+ +PAP        ++  +++  I GP DSP+ GGVF + +    DYP   PKV F TK++HPNI+  G ICLDILK++WSPAL I  VLLSI +LL+ PNPDDPL  ++A  +KT+  +    AR
Sbjct:   15 LMTEPAPGISATPATDNFRYFKVAISGPLDSPFEGGVFNLELFLTDDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEHWKTNEKEAMARAR 141          
BLAST of CF504397 vs. ExPASy Swiss-Prot
Match: UBC1_SCHPO (Ubiquitin-conjugating enzyme E2 1 OS=Schizosaccharomyces pombe GN=ubc1 PE=2 SV=2)

HSP 1 Score: 116.701 bits (291), Expect = 1.427e-26
Identity = 52/115 (45.22%), Postives = 76/115 (66.09%), Query Frame = 3
Query:  108 LQEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINS-NGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYETTAR 449
            + +D+ H +    GP  +PY GG F+V I  P DYPF+PPK+ F TK++HPN++S  G+ICLDILK+QWSP  T+   L+S+ SLL  P P +P   ++A +Y  +  ++  TAR
Sbjct:   29 INDDISHLKGMFRGPEGTPYEGGYFVVDIEIPIDYPFRPPKMNFDTKIYHPNVSSQTGAICLDILKDQWSPVYTMKSALISLQSLLCTPEPSNPQDAQVAQVYLQNYQQFVRTAR 143          

HSP 2 Score: 22.3274 bits (46), Expect = 1.427e-26
Identity = 9/14 (64.29%), Postives = 12/14 (85.71%), Query Frame = 1
Query:   37 SKRILKELKDLQKD 78
            S+RI KEL D+Q+D
Sbjct:    6 SRRIAKELADVQQD 19          
BLAST of CF504397 vs. ExPASy Swiss-Prot
Match: UBC2_USTMA (Ubiquitin-conjugating enzyme E2 2 OS=Ustilago maydis GN=UBC2 PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.433e-26
Identity = 49/111 (44.14%), Postives = 71/111 (63.96%), Query Frame = 3
Query:  102 APLQEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKY 434
            AP  +++  W A I GP D+P+  G F + + F   YP KPP V F +K+FHPN+ +NG +CLDIL+ +WSP   ++ +L SI SLL DPNP+ P   E A +Y+ +  +Y
Sbjct:   27 APCADNLMIWNAVIFGPADTPFEDGTFKLVLTFDESYPNKPPTVKFLSKMFHPNVYANGELCLDILQNRWSPTYDVAAILTSIQSLLHDPNPNSPANAEAASLYRENMKEY 137          

HSP 2 Score: 24.6386 bits (52), Expect = 1.433e-26
Identity = 9/24 (37.50%), Postives = 14/24 (58.33%), Query Frame = 1
Query:   34 ASKRILKELKDLQKDPPTSCSSRP 105
            + KR++++ K L  DPP   S  P
Sbjct:    5 SKKRLIRDFKRLSTDPPGGISGAP 28          
BLAST of CF504397 vs. ExPASy Swiss-Prot
Match: UBC2_YARLI (Ubiquitin-conjugating enzyme E2 2 OS=Yarrowia lipolytica GN=UBC2 PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.874e-26
Identity = 47/116 (40.52%), Postives = 73/116 (62.93%), Query Frame = 3
Query:  102 APLQEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYETTAR 449
            +P+ +++  W A I+GP ++P+  G F + + F   YP KPP V F +++FHPN+ S+G +CLDIL+ +WSP   ++ +L S+ SLL DPN   P   E + +YK  R +YE   R
Sbjct:   27 SPVADNVLTWNAVIIGPAETPFEDGTFRMVLQFDEQYPNKPPAVKFVSQMFHPNVYSSGELCLDILQNRWSPTYDVAAILTSVQSLLNDPNTSSPANVEASMLYKDHRQQYEKRVR 142          

HSP 2 Score: 26.9498 bits (58), Expect = 1.874e-26
Identity = 9/24 (37.50%), Postives = 17/24 (70.83%), Query Frame = 1
Query:   34 ASKRILKELKDLQKDPPTSCSSRP 105
            A +R++++ K +Q+DPP   S+ P
Sbjct:    5 ARRRLMRDFKRMQQDPPQGVSASP 28          
BLAST of CF504397 vs. ExPASy Swiss-Prot
Match: UBC13_YEAST (Ubiquitin-conjugating enzyme E2 13 OS=Saccharomyces cerevisiae GN=UBC13 PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.440e-26
Identity = 54/115 (46.96%), Postives = 75/115 (65.22%), Query Frame = 3
Query:  105 PLQEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYETTAR 449
            P  +++ ++Q TI GP  SPY  G+F + ++ P DYP + PKV F TK++HPNI+  G ICLD+LK  WSPAL I  VLLSI +LL  PNP+DPL  ++A  +  +    +  AR
Sbjct:   27 PHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDRLGRICLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIKNEQGAKAKAR 141          

HSP 2 Score: 21.9422 bits (45), Expect = 2.440e-26
Identity = 9/22 (40.91%), Postives = 13/22 (59.09%), Query Frame = 1
Query:   40 KRILKELKDLQKDPPTSCSSRP 105
            KRI+KE + L  DP    ++ P
Sbjct:    6 KRIIKETEKLVSDPVPGITAEP 27          
BLAST of CF504397 vs. ExPASy Swiss-Prot
Match: UBC2_CANGA (Ubiquitin-conjugating enzyme E2 2 OS=Candida glabrata GN=UBC2 PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 5.848e-26
Identity = 50/111 (45.05%), Postives = 73/111 (65.77%), Query Frame = 3
Query:  102 APLQEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKY 434
            +PL +++  W A I+GP D+PY  G F + + F  DYP KPP V F +++FHPN+ +NG ICLDIL+ +W+P   ++ +L SI SL  DPNP  P   E A ++K  +S+Y
Sbjct:   27 SPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEDYPNKPPHVKFLSEMFHPNVYANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFKDHKSQY 137          
BLAST of CF504397 vs. ExPASy Swiss-Prot
Match: UBC27_ARATH (Ubiquitin carrier protein E2 27 OS=Arabidopsis thaliana GN=UBC27 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 7.638e-26
Identity = 59/139 (42.45%), Postives = 86/139 (61.87%), Query Frame = 3
Query:   36 VEADLEGAEGSPERSSYLLQQPAPLQEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINS-NGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYETTAR 449
            ++ +L+  E + + S   +    P  +++     TI GP  +PY GG F + I  P  YPF+PPK+ F TKV+HPNI+S +G+ICLDILK+QWSPALT+   L+SI +LL+ P P DP    +A  Y  +   + +TAR
Sbjct:    7 IQKELQDCERNQDSSGIRV---CPKSDNLTRLTGTIPGPIGTPYEGGTFQIDITMPDGYPFEPPKMQFSTKVWHPNISSQSGAICLDILKDQWSPALTLKTALVSIQALLSAPEPKDPQDAVVAEQYMKNYQVFVSTAR 142          
BLAST of CF504397 vs. ExPASy Swiss-Prot
Match: UBC2_DEBHA (Ubiquitin-conjugating enzyme E2 2 OS=Debaryomyces hansenii GN=UBC2 PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 9.975e-26
Identity = 50/111 (45.05%), Postives = 73/111 (65.77%), Query Frame = 3
Query:  102 APLQEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKY 434
            +PL +++  W A I+GP D+P+  G F + + F   YP KPP V F +++FHPN+ ++G +CLDIL+ +WSP   +S +L SI SLL DPN   P   E A++YK  RS+Y
Sbjct:   27 SPLPDNVMSWNAVIIGPADTPFEDGTFRLILQFDEQYPNKPPSVKFISEMFHPNVYASGELCLDILQNRWSPTYDVSSILTSIQSLLNDPNISSPANVEAANLYKDHRSQY 137          
The following BLAST results are available for this feature:
BLAST of CF504397 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 262
Match NameE-valueIdentityDescription
UBC2_CANAL1.738e-2743.10Ubiquitin-conjugating enzyme E2 2 OS=Candida albic... [more]
UBE2N_RAT1.818e-2747.83Ubiquitin-conjugating enzyme E2 N OS=Rattus norveg... [more]
UBE2N_DICDI1.818e-2747.24Probable ubiquitin-conjugating enzyme E2 N OS=Dict... [more]
UBC1_SCHPO1.427e-2645.22Ubiquitin-conjugating enzyme E2 1 OS=Schizosacchar... [more]
UBC2_USTMA1.433e-2644.14Ubiquitin-conjugating enzyme E2 2 OS=Ustilago mayd... [more]
UBC2_YARLI1.874e-2640.52Ubiquitin-conjugating enzyme E2 2 OS=Yarrowia lipo... [more]
UBC13_YEAST2.440e-2646.96Ubiquitin-conjugating enzyme E2 13 OS=Saccharomyce... [more]
UBC2_CANGA5.848e-2645.05Ubiquitin-conjugating enzyme E2 2 OS=Candida glabr... [more]
UBC27_ARATH7.638e-2642.45Ubiquitin carrier protein E2 27 OS=Arabidopsis tha... [more]
UBC2_DEBHA9.975e-2645.05Ubiquitin-conjugating enzyme E2 2 OS=Debaryomyces ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-886 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-17_H04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504397 ID=CF504397; Name=CF504397; organism=Citrus sinensis; type=EST; length=449bp
CCAGGAGGATCTCTCTCAGAGAATTAGGTTATGGCGTCGAAGCGGATCTT
GAAGGAGCTGAAGGATCTCCAGAAAGATCCTCCTACCTCTTGCAGCAGCC
GGCCCCGTTGCAGGAAGACATGTTTCATTGGCAAGCAACAATCATGGGCC
CTCCTGATAGTCCATATGCAGGCGGAGTGTTTCTAGTTACAATTCATTTT
CCTCCAGACTATCCATTTAAGCCACCTAAGGTTGCATTCAGAACAAAAGT
CTTCCATCCTAACATCAATAGCAACGGTAGCATTTGCCTTGATATATTAA
AAGAACAGTGGAGCCCTGCCCTTACCATATCAAAGGTGCTGCTTTCTATT
TGTTCACTGTTAACGGACCCGAACCCTGATGATCCATTGGTGCCAGAGAT
TGCCCACATGTACAAGACTGACCGGAGCAAGTATGAAACAACTGCGAGG
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