CF504404

Overview
NameCF504404
Unique NameCF504404
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length522
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF504404_ssr34 microsatellite CF504404_ssr34:34..45. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig11278 contig Csv1_Contig11278:237..757. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504404 vs. ExPASy Swiss-Prot
Match: MYLK3_HUMAN (Putative myosin light chain kinase 3 OS=Homo sapiens GN=MYLK3 PE=2 SV=3)

HSP 1 Score: 73.1738 bits (178), Expect = 8.477e-13
Identity = 45/104 (43.27%), Postives = 59/104 (56.73%), Query Frame = 1
Query:  208 LGRGQFGITYLCTENSTGNSYACKSILKRKLVNKQDREDIKREIQIMQHLAGQQNIVEFRGAYEDRQSVHLVMELCSGGELFDKIIAQG-HYTEKAAAALCRAI 516
            LG G+FG  + CTE STG   A K I   K+ + +DRED+K EI IM  L+   N+++   A+E + S  LVME   GGELFD+I  +  H TE       R I
Sbjct:  521 LGGGRFGQVHRCTEKSTGLPLAAKII---KVKSAKDREDVKNEINIMNQLS-HVNLIQLYDAFESKHSCTLVMEYVDGGELFDRITDEKYHLTELDVVLFTRQI 620          
BLAST of CF504404 vs. ExPASy Swiss-Prot
Match: MARK1_RAT (Serine/threonine-protein kinase MARK1 OS=Rattus norvegicus GN=Mark1 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.446e-12
Identity = 55/157 (35.03%), Postives = 78/157 (49.68%), Query Frame = 1
Query:   52 HVQPPKMSAPQPQPRQQPMKSSATSTRPVQKPETVLGKPLEDIRQFYTLGKELGRGQFGITYLCTENSTGNSYACKSILKRKLVNKQDREDIKREIQIMQHLAGQQNIVEFRGAYEDRQSVHLVMELCSGGELFDKIIAQGHYTEKAAAALCRAIVN 522
            H+ P K S+ Q  PR +   +SAT  +P       +G         Y L K +G+G F    L     TG   A K I K +L N    + + RE++IM+ L    NIV+     E  ++++LVME  SGGE+FD ++A G   EK A A  R IV+
Sbjct:   28 HIPPTKSSSRQNIPRCRNSITSATDEQPH------IGN--------YRLQKTIGKGNFAKVKLARHVLTGREVAVKIIDKTQL-NPTSLQKLFREVRIMKIL-NHPNIVKLFEVIETEKTLYLVMEYASGGEVFDYLVAHGRMKEKEARAKFRQIVS 168          
BLAST of CF504404 vs. ExPASy Swiss-Prot
Match: MARK1_MOUSE (Serine/threonine-protein kinase MARK1 OS=Mus musculus GN=Mark1 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.446e-12
Identity = 55/157 (35.03%), Postives = 78/157 (49.68%), Query Frame = 1
Query:   52 HVQPPKMSAPQPQPRQQPMKSSATSTRPVQKPETVLGKPLEDIRQFYTLGKELGRGQFGITYLCTENSTGNSYACKSILKRKLVNKQDREDIKREIQIMQHLAGQQNIVEFRGAYEDRQSVHLVMELCSGGELFDKIIAQGHYTEKAAAALCRAIVN 522
            H+ P K S+ Q  PR +   +SAT  +P       +G         Y L K +G+G F    L     TG   A K I K +L N    + + RE++IM+ L    NIV+     E  ++++LVME  SGGE+FD ++A G   EK A A  R IV+
Sbjct:   28 HIPPTKSSSRQNIPRCRNSITSATDEQPH------IGN--------YRLQKTIGKGNFAKVKLARHVLTGREVAVKIIDKTQL-NPTSLQKLFREVRIMKIL-NHPNIVKLFEVIETEKTLYLVMEYASGGEVFDYLVAHGRMKEKEARAKFRQIVS 168          
BLAST of CF504404 vs. ExPASy Swiss-Prot
Match: RAD53_YEAST (Serine/threonine-protein kinase RAD53 OS=Saccharomyces cerevisiae GN=RAD53 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.889e-12
Identity = 39/113 (34.51%), Postives = 62/113 (54.87%), Query Frame = 1
Query:  181 RQFYTLGKELGRGQFGITYLCTENSTGNSYACKSILKRKLVNKQDREDIKREIQIMQHLAGQQNIVEFRGAYEDRQSVHLVMELCSGGELFDKIIAQGHYTEKAAAALCRAIV 519
            + F  + + +G+G F       E +TG ++A K I KRK++   D   + RE++++Q L     IV  +G YED +S ++VME  SGG+L D + A G   E A   + R I+
Sbjct:  195 KDFSIIDEVVGQGAFATVKKAIERTTGKTFAVKIISKRKVIGNMD--GVTRELEVLQKL-NHPRIVRLKGFYEDTESYYMVMEFVSGGDLMDFVAAHGAVGEDAGREISRQIL 304          
BLAST of CF504404 vs. ExPASy Swiss-Prot
Match: KCC1_YEAST (Calcium/calmodulin-dependent protein kinase I OS=Saccharomyces cerevisiae GN=CMK1 PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 1.889e-12
Identity = 47/145 (32.41%), Postives = 73/145 (50.34%), Query Frame = 1
Query:  109 KSSATSTRPVQKPETVLGK-----PLEDI-RQFYTLGKELGRGQFGITYLCTENSTGNSYACKSILKRKLV-NKQDREDIKREIQIMQHLAGQQNIVEFRGAYEDRQSVHLVMELCSGGELFDKIIAQGHYTEKAAAALCRAIVN 522
            K S   + P Q  E   GK     P   + ++ Y  GK LG G FG+        TG   A K ++K+ L  NK   E +  E+ I+Q L    NIV F+  +E +   +++ +L  GGELFD+I+ +G +TE+ A  +   I++
Sbjct:    4 KVSEKESSPKQTEEDSEGKMAHVQPASYVNKKKYVFGKTLGAGTFGVVRQAKNTETGEDVAVKILIKKALKGNKVQLEALYDELDILQRLH-HPNIVAFKDWFESKDKFYIITQLAKGGELFDRILKKGKFTEEDAVRILVEILS 147          
BLAST of CF504404 vs. ExPASy Swiss-Prot
Match: CDPK2_PLAFK (Calcium-dependent protein kinase 2 OS=Plasmodium falciparum (isolate K1 / Thailand) GN=CPK2 PE=2 SV=3)

HSP 1 Score: 72.0182 bits (175), Expect = 1.889e-12
Identity = 43/109 (39.45%), Postives = 61/109 (55.96%), Query Frame = 1
Query:  190 YTLGKELGRGQFGITYLCTENSTGNSYACKSILKRKLVNKQDREDIKREIQIMQHLAGQQNIVEFRGAYEDRQSVHLVMELCSGGELFDKIIAQGHYTEKAAAALCRAI 516
            Y + ++LG+G +G  Y   +  T   YA K   K +L N        +EI+IM+ L    NIV+    YE+   ++L+MELCSG ELFD II  G +TEK AA + + I
Sbjct:   72 YIIDEKLGQGTYGCVYKGIDKVTNQLYAIKEEKKDRLKNINR---FFQEIEIMKKL-DHPNIVKLYETYENDNYIYLIMELCSGRELFDSIIENGSFTEKNAATIMKQI 176          
BLAST of CF504404 vs. ExPASy Swiss-Prot
Match: CDPK2_PLAF7 (Calcium-dependent protein kinase 2 OS=Plasmodium falciparum (isolate 3D7) GN=CPK2 PE=2 SV=3)

HSP 1 Score: 72.0182 bits (175), Expect = 1.889e-12
Identity = 43/109 (39.45%), Postives = 61/109 (55.96%), Query Frame = 1
Query:  190 YTLGKELGRGQFGITYLCTENSTGNSYACKSILKRKLVNKQDREDIKREIQIMQHLAGQQNIVEFRGAYEDRQSVHLVMELCSGGELFDKIIAQGHYTEKAAAALCRAI 516
            Y + ++LG+G +G  Y   +  T   YA K   K +L N        +EI+IM+ L    NIV+    YE+   ++L+MELCSG ELFD II  G +TEK AA + + I
Sbjct:   72 YIIDEKLGQGTYGCVYKGIDKVTNQLYAIKEEKKDRLKNINR---FFQEIEIMKKL-DHPNIVKLYETYENDNYIYLIMELCSGRELFDSIIENGSFTEKNAATIMKQI 176          
BLAST of CF504404 vs. ExPASy Swiss-Prot
Match: DCLK3_MOUSE (Serine/threonine-protein kinase DCLK3 OS=Mus musculus GN=Dclk3 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.221e-12
Identity = 49/157 (31.21%), Postives = 74/157 (47.13%), Query Frame = 1
Query:   64 PKMSAPQPQPRQQPMKSSATSTRPVQKPETVLGKPLEDIRQFYTLGKELGRGQFGITYLCTENSTGNSYACKSILKRKLVNKQDREDIKREIQIMQHLAGQQNIVEFRGAYEDRQSVHLVMELCSGGELFDKIIAQGHYTEKAAAA----LCRAIVN 522
            P+  + +    ++P + S    RP        G    D+ + Y +G  +G G F     C    T  +YA K I K +L  K+D  D   EI I+Q L+   NIV+    YE    ++L+ME   GG+LFD I+    + E  AA     LC+A+V+
Sbjct:  308 PEKESKRKLEEKRPERPSGRKPRPK-------GIISADVEKHYDIGGVIGDGNFATVKECRHRETKQAYAMKMIDKSQLKGKEDIVD--SEILIIQSLS-HPNIVKLHEVYETEAEIYLIMEYVQGGDLFDAIVENVKFPEPEAAVMITDLCKALVH 454          
BLAST of CF504404 vs. ExPASy Swiss-Prot
Match: KCC1B_RAT (Calcium/calmodulin-dependent protein kinase type 1B OS=Rattus norvegicus GN=Pnck PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.207e-12
Identity = 42/117 (35.90%), Postives = 65/117 (55.56%), Query Frame = 1
Query:  154 VLGKPLEDIRQFYTLGKELGRGQFGITYLCTENSTGNSYACKSILKRKLVNKQDREDIKREIQIMQHLAGQQNIVEFRGAYEDRQSVHLVMELCSGGELFDKIIAQGHYTEKAAAAL 504
            +L K  EDI   Y + ++LG G F    L  E  + +  A K I K+ L  K+    ++ EI +++ ++   NIV     +E    ++L MEL +GGELFD+I+ +G YTEK A+ L
Sbjct:    3 LLKKQTEDISSVYEIREKLGSGAFSEVMLAQERGSAHLVALKCIPKKALRGKEAL--VENEIAVLRRIS-HPNIVALEDVHESPSHLYLAMELVTGGELFDRIMERGSYTEKDASHL 116          
BLAST of CF504404 vs. ExPASy Swiss-Prot
Match: KCC1B_MOUSE (Calcium/calmodulin-dependent protein kinase type 1B OS=Mus musculus GN=Pnck PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.207e-12
Identity = 42/117 (35.90%), Postives = 65/117 (55.56%), Query Frame = 1
Query:  154 VLGKPLEDIRQFYTLGKELGRGQFGITYLCTENSTGNSYACKSILKRKLVNKQDREDIKREIQIMQHLAGQQNIVEFRGAYEDRQSVHLVMELCSGGELFDKIIAQGHYTEKAAAAL 504
            +L K  EDI   Y + ++LG G F    L  E  + +  A K I K+ L  K+    ++ EI +++ ++   NIV     +E    ++L MEL +GGELFD+I+ +G YTEK A+ L
Sbjct:    3 LLKKQTEDISSVYEIREKLGSGAFSEVMLAQERGSAHLVALKCIPKKALRGKEAL--VENEIAVLRRIS-HPNIVALEDVHESPSHLYLAMELVTGGELFDRIMERGSYTEKDASHL 116          
The following BLAST results are available for this feature:
BLAST of CF504404 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 110
Match NameE-valueIdentityDescription
MYLK3_HUMAN8.477e-1343.27Putative myosin light chain kinase 3 OS=Homo sapie... [more]
MARK1_RAT1.446e-1235.03Serine/threonine-protein kinase MARK1 OS=Rattus no... [more]
MARK1_MOUSE1.446e-1235.03Serine/threonine-protein kinase MARK1 OS=Mus muscu... [more]
RAD53_YEAST1.889e-1234.51Serine/threonine-protein kinase RAD53 OS=Saccharom... [more]
KCC1_YEAST1.889e-1232.41Calcium/calmodulin-dependent protein kinase I OS=S... [more]
CDPK2_PLAFK1.889e-1239.45Calcium-dependent protein kinase 2 OS=Plasmodium f... [more]
CDPK2_PLAF71.889e-1239.45Calcium-dependent protein kinase 2 OS=Plasmodium f... [more]
DCLK3_MOUSE3.221e-1231.21Serine/threonine-protein kinase DCLK3 OS=Mus muscu... [more]
KCC1B_RAT4.207e-1235.90Calcium/calmodulin-dependent protein kinase type 1... [more]
KCC1B_MOUSE4.207e-1235.90Calcium/calmodulin-dependent protein kinase type 1... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-893 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-17_H11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504404 ID=CF504404; Name=CF504404; organism=Citrus sinensis; type=EST; length=522bp
GCAACACAAACCCCTTATCAAACTTATCAACAACAGCAGCAGCAGCAACT
ACACGTGCAGCCTCCTAAAATGTCTGCCCCACAGCCACAACCAAGGCAGC
AACCGATGAAATCTTCTGCAACAAGCACAAGGCCAGTGCAAAAGCCAGAA
ACAGTGCTGGGCAAGCCTCTAGAAGACATTAGACAATTTTACACATTAGG
GAAAGAATTGGGTAGAGGCCAGTTTGGAATCACATATTTGTGCACTGAGA
ATTCAACAGGCAATAGCTATGCATGCAAGTCAATTTTAAAGAGGAAGCTT
GTGAATAAACAAGATAGAGAGGATATAAAGCGAGAGATTCAGATAATGCA
GCACTTGGCTGGTCAACAAAATATTGTTGAATTTAGGGGTGCTTACGAGG
ACAGACAAAGTGTTCATCTTGTGATGGAGTTGTGTTCTGGTGGTGAGCTT
TTTGATAAGATTATTGCTCAGGGGCATTATACCGAGAAAGCTGCTGCCGC
TCTTTGTAGGGCTATTGTTAAT
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