CF504404

Overview
NameCF504404
Unique NameCF504404
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length522
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF504404_ssr34 microsatellite CF504404_ssr34:34..45. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig11278 contig Csv1_Contig11278:237..757. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504404 vs. ExPASy Swiss-Prot
Match: KCC1A_RAT (Calcium/calmodulin-dependent protein kinase type 1 OS=Rattus norvegicus GN=Camk1 PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 4.207e-12
Identity = 43/114 (37.72%), Postives = 59/114 (51.75%), Query Frame = 1
Query:  163 KPLEDIRQFYTLGKELGRGQFGITYLCTENSTGNSYACKSILKRKLVNKQDREDIKREIQIMQHLAGQQNIVEFRGAYEDRQSVHLVMELCSGGELFDKIIAQGHYTEKAAAAL 504
            K  EDIR  Y     LG G F    L  +  T    A K I K+ L  K+    ++ EI ++ H     NIV     YE    ++L+M+L SGGELFD+I+ +G YTE+ A+ L
Sbjct:   11 KQAEDIRDIYDFRDVLGTGAFSEVILAEDKRTQKLVAIKCIAKKALEGKEG--SMENEIAVL-HKIKHPNIVALDDIYESGGHLYLIMQLVSGGELFDRIVEKGFYTERDASRL 121          
BLAST of CF504404 vs. ExPASy Swiss-Prot
Match: KCC1A_MOUSE (Calcium/calmodulin-dependent protein kinase type 1 OS=Mus musculus GN=Camk1 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.207e-12
Identity = 43/114 (37.72%), Postives = 59/114 (51.75%), Query Frame = 1
Query:  163 KPLEDIRQFYTLGKELGRGQFGITYLCTENSTGNSYACKSILKRKLVNKQDREDIKREIQIMQHLAGQQNIVEFRGAYEDRQSVHLVMELCSGGELFDKIIAQGHYTEKAAAAL 504
            K  EDIR  Y     LG G F    L  +  T    A K I K+ L  K+    ++ EI ++ H     NIV     YE    ++L+M+L SGGELFD+I+ +G YTE+ A+ L
Sbjct:   11 KQAEDIRDIYDFRDVLGTGAFSEVILAEDKRTQKLVAIKCIAKKALEGKEG--SMENEIAVL-HKIKHPNIVALDDIYESGGHLYLIMQLVSGGELFDRIVEKGFYTERDASRL 121          
BLAST of CF504404 vs. ExPASy Swiss-Prot
Match: FHKC_DICDI (Probable serine/threonine-protein kinase fhkC OS=Dictyostelium discoideum GN=fhkC PE=3 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 4.207e-12
Identity = 41/114 (35.96%), Postives = 66/114 (57.89%), Query Frame = 1
Query:  181 RQFYTLGKELGRGQFGITYLCTENSTGNSYACKSILKRKLVNKQDRED-IKREIQIMQHLAGQQNIVEFRGAYEDRQSVHLVMELCSGGELFDKIIAQGHYTEKAAAALCRAIV 519
            +Q Y L + LG G F    L  E  TGN YA K I K+K+     R+D +  E+ ++  +   QNI+  +  +E +++++LV+EL +GGELFDKI+++  + E      CR I+
Sbjct:  215 QQKYDLREVLGTGNFASVRLGVEKETGNKYAIKIIDKKKMSMTSKRKDSLMDEVNVLTKVK-HQNIISIKEVFETQKNLYLVLELVTGGELFDKIVSERKFQEDT----CRYIL 323          
BLAST of CF504404 vs. ExPASy Swiss-Prot
Match: CDPK4_PLAYO (Calcium-dependent protein kinase 4 OS=Plasmodium yoelii yoelii GN=CPK4 PE=3 SV=3)

HSP 1 Score: 70.8626 bits (172), Expect = 4.207e-12
Identity = 37/107 (34.58%), Postives = 65/107 (60.75%), Query Frame = 1
Query:  202 KELGRGQFGITYLCTENSTGNSYACKSILKRKLVNKQDREDIKREIQIMQHLAGQQNIVEFRGAYEDRQSVHLVMELCSGGELFDKIIAQGHYTEKAAAALCRAIVN 522
            K LG+G FG   L  +  TG+ YA K I K+ +  K D++ + RE+++++ L    NI++    +ED    +LV ++ SGGELFD+II++  + E  AA + + +++
Sbjct:   74 KILGKGSFGEVILSKDKHTGHEYAIKVISKKHVKRKTDKQSLLREVELLKML-DHINIMKLYEFFEDNNYYYLVSDVYSGGELFDEIISRKRFYEVDAARIIKQVLS 179          
BLAST of CF504404 vs. ExPASy Swiss-Prot
Match: CDPK4_PLAF7 (Calcium-dependent protein kinase 4 OS=Plasmodium falciparum (isolate 3D7) GN=CPK4 PE=1 SV=3)

HSP 1 Score: 70.8626 bits (172), Expect = 4.207e-12
Identity = 38/107 (35.51%), Postives = 65/107 (60.75%), Query Frame = 1
Query:  202 KELGRGQFGITYLCTENSTGNSYACKSILKRKLVNKQDREDIKREIQIMQHLAGQQNIVEFRGAYEDRQSVHLVMELCSGGELFDKIIAQGHYTEKAAAALCRAIVN 522
            K LG+G FG   L  +  TG+ YA K I K+ +  K D+E + RE+++++ L    NI++    +ED    +LV ++ +GGELFD+II++  + E  AA + + I++
Sbjct:   74 KILGKGSFGEVILSRDKHTGHEYAIKVISKKHVKRKTDKESLLREVELLKML-DHINIMKLYEFFEDNNYYYLVSDVYTGGELFDEIISRKRFYEIDAARIIKQILS 179          
BLAST of CF504404 vs. ExPASy Swiss-Prot
Match: CDPK4_PLABA (Calcium-dependent protein kinase 4 OS=Plasmodium berghei (strain Anka) GN=CPK4 PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 4.207e-12
Identity = 37/107 (34.58%), Postives = 65/107 (60.75%), Query Frame = 1
Query:  202 KELGRGQFGITYLCTENSTGNSYACKSILKRKLVNKQDREDIKREIQIMQHLAGQQNIVEFRGAYEDRQSVHLVMELCSGGELFDKIIAQGHYTEKAAAALCRAIVN 522
            K LG+G FG   L  +  TG+ YA K I K+ +  K D++ + RE+++++ L    NI++    +ED    +LV ++ SGGELFD+II++  + E  AA + + +++
Sbjct:   74 KILGKGSFGEVILSKDKHTGHEYAIKVISKKHVKRKTDKQSLLREVELLKML-DHINIMKLYEFFEDNNYYYLVSDVYSGGELFDEIISRKRFYEVDAARIIKQVLS 179          
BLAST of CF504404 vs. ExPASy Swiss-Prot
Match: KCC2_YEAST (Calcium/calmodulin-dependent protein kinase II OS=Saccharomyces cerevisiae GN=CMK2 PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 7.177e-12
Identity = 44/137 (32.12%), Postives = 69/137 (50.36%), Query Frame = 1
Query:  136 VQKPETVLGKPLEDI-------------RQFYTLGKELGRGQFGITYLCTENSTGNSYACKSILKRKLV-NKQDREDIKREIQIMQHLAGQQNIVEFRGAYEDRQSVHLVMELCSGGELFDKIIAQGHYTEKAAAAL 504
            VQ PE + G P+                R  Y  G+ LG G FG+     + ST    A K +LK+ L  N    + +  E+ I+Q L+   NIV F+  +E +   ++V +L +GGELFD+I+++G +TE  A  +
Sbjct:   16 VQDPERLNGHPVAKFINKLSGQPESYVNRTNYIFGRTLGAGSFGVVRQARKLSTNEDVAIKILLKKALQGNNVQLQMLYEELSILQKLS-HPNIVSFKDWFESKDKFYIVTQLATGGELFDRILSRGKFTEVDAVEI 151          
BLAST of CF504404 vs. ExPASy Swiss-Prot
Match: KCC1B_HUMAN (Calcium/calmodulin-dependent protein kinase type 1B OS=Homo sapiens GN=PNCK PE=2 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 7.177e-12
Identity = 42/117 (35.90%), Postives = 64/117 (54.70%), Query Frame = 1
Query:  154 VLGKPLEDIRQFYTLGKELGRGQFGITYLCTENSTGNSYACKSILKRKLVNKQDREDIKREIQIMQHLAGQQNIVEFRGAYEDRQSVHLVMELCSGGELFDKIIAQGHYTEKAAAAL 504
            +L K  EDI   Y + + LG G F    L  E  + +  A K I K+ L  K+    ++ EI +++ ++   NIV     +E    ++L MEL +GGELFD+I+ +G YTEK A+ L
Sbjct:    3 LLKKHTEDISSVYEIRERLGSGAFSEVVLAQERGSAHLVALKCIPKKALRGKEAL--VENEIAVLRRIS-HPNIVALEDVHESPSHLYLAMELVTGGELFDRIMERGSYTEKDASHL 116          
BLAST of CF504404 vs. ExPASy Swiss-Prot
Match: KCC1A_HUMAN (Calcium/calmodulin-dependent protein kinase type 1 OS=Homo sapiens GN=CAMK1 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 7.177e-12
Identity = 43/114 (37.72%), Postives = 58/114 (50.88%), Query Frame = 1
Query:  163 KPLEDIRQFYTLGKELGRGQFGITYLCTENSTGNSYACKSILKRKLVNKQDREDIKREIQIMQHLAGQQNIVEFRGAYEDRQSVHLVMELCSGGELFDKIIAQGHYTEKAAAAL 504
            K  EDIR  Y     LG G F    L  +  T    A K I K  L  K+    ++ EI ++ H     NIV     YE    ++L+M+L SGGELFD+I+ +G YTE+ A+ L
Sbjct:   11 KQAEDIRDIYDFRDVLGTGAFSEVILAEDKRTQKLVAIKCIAKEALEGKEG--SMENEIAVL-HKIKHPNIVALDDIYESGGHLYLIMQLVSGGELFDRIVEKGFYTERDASRL 121          
BLAST of CF504404 vs. ExPASy Swiss-Prot
Match: CIPK7_ARATH (CBL-interacting serine/threonine-protein kinase 7 OS=Arabidopsis thaliana GN=CIPK7 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 7.177e-12
Identity = 46/141 (32.62%), Postives = 64/141 (45.39%), Query Frame = 1
Query:   73 SAPQPQPRQQPMKSSATSTRPVQKPETVLGKPLEDIRQFYTLGKELGRGQFGITYLCTENSTGNSYACKSILKRKLVNKQDREDIKREIQIMQHLAGQQNIVEFRGAYEDRQSVHLVMELCSGGELFDKIIAQGHYTEKAA 495
            S PQPQ +  P  + A         + +LGK        Y LG+ LG G F   +L     +    A K I K+K +       I REI  M+ L    NI++       +  ++LVMEL SGGELF K++ +G   E  A
Sbjct:    3 SLPQPQNQSSPATTPA---------KILLGK--------YELGRRLGSGSFAKVHLARSIESDELVAVKIIEKKKTIESGMEPRIIREIDAMRRLRHHPNILKIHEVMATKSKIYLVMELASGGELFSKVLRRGRLPESTA 126          
The following BLAST results are available for this feature:
BLAST of CF504404 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 110
Match NameE-valueIdentityDescription
KCC1A_RAT4.207e-1237.72Calcium/calmodulin-dependent protein kinase type 1... [more]
KCC1A_MOUSE4.207e-1237.72Calcium/calmodulin-dependent protein kinase type 1... [more]
FHKC_DICDI4.207e-1235.96Probable serine/threonine-protein kinase fhkC OS=D... [more]
CDPK4_PLAYO4.207e-1234.58Calcium-dependent protein kinase 4 OS=Plasmodium y... [more]
CDPK4_PLAF74.207e-1235.51Calcium-dependent protein kinase 4 OS=Plasmodium f... [more]
CDPK4_PLABA4.207e-1234.58Calcium-dependent protein kinase 4 OS=Plasmodium b... [more]
KCC2_YEAST7.177e-1232.12Calcium/calmodulin-dependent protein kinase II OS=... [more]
KCC1B_HUMAN7.177e-1235.90Calcium/calmodulin-dependent protein kinase type 1... [more]
KCC1A_HUMAN7.177e-1237.72Calcium/calmodulin-dependent protein kinase type 1... [more]
CIPK7_ARATH7.177e-1232.62CBL-interacting serine/threonine-protein kinase 7 ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-893 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-17_H11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504404 ID=CF504404; Name=CF504404; organism=Citrus sinensis; type=EST; length=522bp
GCAACACAAACCCCTTATCAAACTTATCAACAACAGCAGCAGCAGCAACT
ACACGTGCAGCCTCCTAAAATGTCTGCCCCACAGCCACAACCAAGGCAGC
AACCGATGAAATCTTCTGCAACAAGCACAAGGCCAGTGCAAAAGCCAGAA
ACAGTGCTGGGCAAGCCTCTAGAAGACATTAGACAATTTTACACATTAGG
GAAAGAATTGGGTAGAGGCCAGTTTGGAATCACATATTTGTGCACTGAGA
ATTCAACAGGCAATAGCTATGCATGCAAGTCAATTTTAAAGAGGAAGCTT
GTGAATAAACAAGATAGAGAGGATATAAAGCGAGAGATTCAGATAATGCA
GCACTTGGCTGGTCAACAAAATATTGTTGAATTTAGGGGTGCTTACGAGG
ACAGACAAAGTGTTCATCTTGTGATGGAGTTGTGTTCTGGTGGTGAGCTT
TTTGATAAGATTATTGCTCAGGGGCATTATACCGAGAAAGCTGCTGCCGC
TCTTTGTAGGGCTATTGTTAAT
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