CF504406
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF504406 vs. ExPASy Swiss-Prot
Match: RS4_METPE (30S ribosomal protein S4P OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=rps4p PE=3 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 5.220e-24 Identity = 64/157 (40.76%), Postives = 95/157 (60.51%), Query Frame = 3 Query: 27 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTL---DEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRGDSQKHIEFSLTSP 488 K ++ P+RP+EK+R++ E R+V EYGLR KRE+WR Q L R R AAR+LL + + E LL ++R G L + D VL+L ++ LERRLQT+V++ G+A+S AR ++ HI + + V+IPS+ V D + I + TSP Sbjct: 9 KGYEAPKRPFEKQRIEDETRIVIEYGLRNKREVWRAQSVLRRYRKAARELLAFMSQSSDEQQIATKKEHLLGHLNRIGLLGPDADIGD-VLSLKIQQPLERRLQTMVYRQGLARSPKQARQMVTHGHIAIAGRRVDIPSYRVPRDQETLISYYGTSP 164
BLAST of CF504406 vs. ExPASy Swiss-Prot
Match: RS4_THEVO (30S ribosomal protein S4P OS=Thermoplasma volcanium GN=rps4p PE=3 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 8.904e-24 Identity = 64/157 (40.76%), Postives = 94/157 (59.87%), Query Frame = 3 Query: 27 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDL---LTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRGDSQKHIEFSLTSP 488 K + PR P+EK+R+D E +++ +YGL+ KRE+WR + LS IR+ AR L L + N ++ + E +++R+ RY L + LD VL+LTVEN L+RRLQT+VFK +A S AR LI HI V + V +P +V + I + SP Sbjct: 9 KKYSTPRHPWEKDRIDEENKILVKYGLKNKREIWRSEAMLSSIRSQARYLRARLRASDANAQK--QLERMIKRLSRYKILSDKAT-LDDVLSLTVENILDRRLQTIVFKKNLALSEKQARQLITHGHITVNGRRVTVPGMLVEAQYEDTIAYYENSP 162
BLAST of CF504406 vs. ExPASy Swiss-Prot
Match: RS4_METHJ (30S ribosomal protein S4P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rps4p PE=3 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 8.904e-24 Identity = 63/157 (40.13%), Postives = 94/157 (59.87%), Query Frame = 3 Query: 27 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDE---KNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRGDSQKHIEFSLTSP 488 K ++ P+RP+E R++ E RLV EYGLR KRE+W + AL + R AAR+++ L + R + + L+ + R G L E+ + +D VLAL VE L+RRLQT V++ G A+S AR I HI +G + V IP + V Q+ I ++ +SP Sbjct: 9 KQYQTPKRPFELSRIEEETRLVIEYGLRNKREVWIAKGALRKYRKAAREIIALQSTGSEQARVERKKDELIGSLQRSGMLSENAD-IDDVLALKVEQQLDRRLQTQVYRRGFARSPKQARQFITHGHIAIGGRRVTIPGYTVSAKEQEEISYAGSSP 164
BLAST of CF504406 vs. ExPASy Swiss-Prot
Match: RS4_METS5 (30S ribosomal protein S4P OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rps4p PE=3 SV=1) HSP 1 Score: 107.457 bits (267), Expect = 3.384e-23 Identity = 56/158 (35.44%), Postives = 95/158 (60.13%), Query Frame = 3 Query: 15 RNYGKTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRGDSQKHIEFSLTSP 488 R + ++ P P+ + L +E +++G+YGLR K+E+W + ++ R+ AR LL L R + LL ++++ G L+ Q+ +D +L L E+ LERRLQT+V + G+A++I+ AR LI HI VG + + P ++V+ D + I+F TSP Sbjct: 5 RKSRRKWEGPGMPWLSQALKSEQKIMGDYGLRNKKEIWLARTIVTGYRHMARSLLALPPAE--RAVREKQLLGKLYKLGLLKSEQSTIDDILGLEEESLLERRLQTIVHRKGLARTIYQARQLIVHGHIAVGGRKITSPGYIVKRDEEDSIDFYPTSP 160
BLAST of CF504406 vs. ExPASy Swiss-Prot
Match: RS4_METBF (30S ribosomal protein S4P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rps4p PE=3 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 4.419e-23 Identity = 59/160 (36.88%), Postives = 92/160 (57.50%), Query Frame = 3 Query: 27 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEG------EALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRGDSQKHIEFSLTSP 488 K+F+ PR P+++ R+ +E++LV YGLR KRE+W+ L R+ AR LL + R EG E +L ++ RYG ++ S +D +L+L EN LERRLQT V + G+A+++ AR I HI + + +P +V + + HI + TSP Sbjct: 9 KSFETPRHPWQEARMASEVQLVKAYGLRNKREVWKAASTLRMYRSEARRLLASAANSQERGLEGHQKTQSEEILAKLIRYGIIK-SDADIDDILSLKTENILERRLQTQVLRLGLARTVVQARQFITHGHIAINGRKATVPGMLVSKEDEMHIGYYATSP 167
BLAST of CF504406 vs. ExPASy Swiss-Prot
Match: RS4_KORCO (30S ribosomal protein S4P OS=Korarchaeum cryptofilum (strain OPF8) GN=rps4p PE=3 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 4.419e-23 Identity = 58/152 (38.16%), Postives = 92/152 (60.53%), Query Frame = 3 Query: 15 RNYGKTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRGDSQKHIE 470 R + K +++P +P+++ L+ RL G YGLR KRELWR+ + + R AR LL + ++ E +++++ G L + LD +L L+VE FLERRLQT+V++ G AKS + AR LI HIRV + + PS++V+ + + IE Sbjct: 5 RKHRKKYERPYKPWDRRVLEETNRLAGYYGLRNKRELWRMSFLAKKYRRIARQLLAAPKSESWKV---EPIIKKLQALGILSKDAT-LDDLLDLSVEQFLERRLQTIVWRKGFAKSPYMARQLITHGHIRVNGRRIRQPSYLVKIEEEDKIE 152
BLAST of CF504406 vs. ExPASy Swiss-Prot
Match: RS4_SULSO (30S ribosomal protein S4P OS=Sulfolobus solfataricus GN=rps4p PE=3 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 5.772e-23 Identity = 57/153 (37.25%), Postives = 92/153 (60.13%), Query Frame = 3 Query: 27 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRGDSQKHIEFSLTS 485 K ++ P P+ KER+ E L+G+YGLR KRE+W Q + + R+ AR LL L R + L+ ++ + G L++ +D +L+LT ++ LERRLQT+V+K G++ +I+ AR LI HI V + V P ++V D + I++ +TS Sbjct: 9 KKWETPGHPWIKERIGYEQELLGKYGLRNKREIWIAQSIIRKFRHQARSLLALPPAE--RAVREKQLVGKLLKMGLLKKETATVDDILSLTEQDLLERRLQTIVYKKGLSNTIYQARQLITHGHIAVNGKRVTSPGYIVNVDEENLIDYYVTS 159
BLAST of CF504406 vs. ExPASy Swiss-Prot
Match: RS4_PYRAE (30S ribosomal protein S4P OS=Pyrobaculum aerophilum GN=rps4p PE=3 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 7.538e-23 Identity = 59/137 (43.07%), Postives = 86/137 (62.77%), Query Frame = 3 Query: 39 KPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLL--TLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVV 443 KP++ + K+ L EL+L+GEYGLR K+ELW + L I AR LL T +E+ P + ++++ GF+E+ +LD +L+L V LERRLQT+V++ G+AKSIHHAR LI H+ V + V P F+V Sbjct: 15 KPKKIWNKQLLLEELQLMGEYGLRNKKELWLARARLKWITRRARSLLSMTAEERAPLEM----PFKEKLYKMGFIEDPNVQLDRILSLDVRAILERRLQTIVYRMGLAKSIHHARQLIVHGHVAVAGRRVTSPGFLV 147
BLAST of CF504406 vs. ExPASy Swiss-Prot
Match: RS4_PYRCJ (30S ribosomal protein S4P OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rps4p PE=3 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 9.845e-23 Identity = 60/137 (43.80%), Postives = 85/137 (62.04%), Query Frame = 3 Query: 39 KPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLL--TLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVV 443 KP++ + K+ L EL+L+GEYGLR K+ELW + L I AR LL T +E+ P + ++++ GF+E+ LD +L+L V LERRLQTLVF+ G+AKSIHHAR L+ H+ V + V P F+V Sbjct: 15 KPKKIWNKQLLLEELQLMGEYGLRNKKELWLARARLKWIVRRARALLSMTAEERAPLEV----PFKEKLYKMGFIEDPNVPLDRILSLDVRAILERRLQTLVFRMGLAKSIHHARQLVVHGHVLVAGRRVTSPGFLV 147
BLAST of CF504406 vs. ExPASy Swiss-Prot
Match: RS4_CALMQ (30S ribosomal protein S4P OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=rps4p PE=3 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 9.845e-23 Identity = 67/152 (44.08%), Postives = 91/152 (59.87%), Query Frame = 3 Query: 39 KPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLR---RMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRGDSQKHIEFSLTS 485 KP+R + + L +ELRL+GEYGLR K+ELW + L I++ AR++L+ P I GEA R R+ R G + + LD VLAL V LERRLQTLV++ GMA+SIH AR LI HI + V P ++V + + I F+ TS Sbjct: 15 KPKRLWNSDLLMSELRLIGEYGLRNKKELWLARALLRSIKHRAREILSA----PMEI-RGEAEKRLKDRLFRMGLISDINIPLDSVLALDVTAVLERRLQTLVYRKGMARSIHEARQLIVHGHISINGVRVRSPGYLVPRNLEDGIGFAPTS 161 The following BLAST results are available for this feature:
BLAST of CF504406 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 85
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Sequences
The
following sequences are available for this feature:
EST sequence >CF504406 ID=CF504406; Name=CF504406; organism=Citrus sinensis; type=EST; length=489bpback to top |