CF504406

Overview
NameCF504406
Unique NameCF504406
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length489
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504406 vs. ExPASy Swiss-Prot
Match: RS4_METST (30S ribosomal protein S4P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rps4p PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 3.277e-18
Identity = 51/149 (34.23%), Postives = 85/149 (57.05%), Query Frame = 3
Query:   27 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRGDSQKHIEF 473
            K +  P  P+  +R+  E RL  +YGL+ K+E+W+ +  + R R  AR +L +D     R  + + LL  + R GF+  +  KL+ VL L VE+ L RRLQ+LVFK G++ +   AR+ +   HI +  + +N P  +V    +++I+F
Sbjct:    9 KQYDTPSHPWNADRIKEENRLANKYGLKNKKEIWKAESRVKRYRRDARIILGMDIDE--RADKEKELLDHLVRAGFISPNA-KLEEVLDLNVEDILRRRLQSLVFKRGLSHTAKEARLFVVHGHITLNGKKINAPGHLVEKADEENIDF 154          
BLAST of CF504406 vs. ExPASy Swiss-Prot
Match: RS4_METS3 (30S ribosomal protein S4P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rps4p PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 3.277e-18
Identity = 57/158 (36.08%), Postives = 85/158 (53.80%), Query Frame = 3
Query:   15 RNYGKTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRGDSQKHIEFSLTSP 488
            R   K +  P  P+  ER+  E +L+ +YGL+ K+E+W+    + R    AR LL  D    +   E   LL  + R G L E    L+ VL LTVE+ L RRLQT+V+K G+A++   AR+ +   HI +  + +N PS+VV    +  I F  +SP
Sbjct:    5 RKSRKKYNTPPHPWNAERIKNENKLMTKYGLKNKKEIWKADTLVRRYSREARYLLGFDMDQMQD--EKLELLGHLARTGVLPEGA-ALEEVLNLTVEDILRRRLQTIVYKKGLARTPKEARMFVVHGHITLNGKKINSPSYVVLKGQEDEIGFYPSSP 159          
BLAST of CF504406 vs. ExPASy Swiss-Prot
Match: RS4_NATPD (30S ribosomal protein S4P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rps4p PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 5.590e-18
Identity = 56/155 (36.13%), Postives = 82/155 (52.90%), Query Frame = 3
Query:   27 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFE-GEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRGDSQKHIEFSLTSP 488
            K ++ P  P++ ER+  E  L+  YGL  K ELWR Q  L   R  AR L+   + +     E G   L R+ R G L++ ++ LD +L+L V + LERRLQT+ ++ G+  +   AR  I   H+ V    V+ PS+ V    +  IEF  TSP
Sbjct:    8 KFYETPNHPFQGERIAEEGDLLSRYGLVNKEELWRAQSELRDYRREARRLIGEAQGDTVAAAEAGSEFLARLKRIGVLDD-EDSLDDILSLDVTDILERRLQTVAYRKGLGNTPQQARQFIAHGHVTVNGARVSAPSYKVDVAEEGEIEFDETSP 161          
BLAST of CF504406 vs. ExPASy Swiss-Prot
Match: RS9_TOBAC (40S ribosomal protein S9 (Fragment) OS=Nicotiana tabacum GN=RPS9 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.988e-15
Identity = 38/45 (84.44%), Postives = 43/45 (95.56%), Query Frame = 3
Query:  354 AKSIHHARVLIRQRHIRVGRQLVNIPSFVVRGDSQKHIEFSLTSP 488
            AKS+HHARVLIRQRHIRVGRQ+VN+PSF+VR DSQKHI+FSL SP
Sbjct:    1 AKSVHHARVLIRQRHIRVGRQVVNVPSFMVRLDSQKHIDFSLISP 45          
BLAST of CF504406 vs. ExPASy Swiss-Prot
Match: IMP3_MOUSE (U3 small nucleolar ribonucleoprotein protein IMP3 OS=Mus musculus GN=Imp3 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 6.619e-11
Identity = 40/122 (32.79%), Postives = 66/122 (54.10%), Query Frame = 3
Query:   78 ELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVV 443
            ELR++  Y L+ + E  R       +R  AR L  L E++P R+    ALL +++  G L  ++  L+   +++  +F  RRL TL+ K  MA+ +  A   + Q H+RVG  +V  P+F+V
Sbjct:   30 ELRVLRRYRLQRREEYTRYNQLSRAVRELARRLRDLPERDPFRVRASAALLDKLYAMG-LVPTRGSLELCDSVSASSFCRRRLPTLLLKLRMAQHLQAAVAFVEQGHVRVGPDVVTDPAFLV 150          
The following BLAST results are available for this feature:
BLAST of CF504406 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
RS4_METST3.277e-1834.2330S ribosomal protein S4P OS=Methanosphaera stadtm... [more]
RS4_METS33.277e-1836.0830S ribosomal protein S4P OS=Methanobrevibacter sm... [more]
RS4_NATPD5.590e-1836.1330S ribosomal protein S4P OS=Natronomonas pharaoni... [more]
RS9_TOBAC1.988e-1584.4440S ribosomal protein S9 (Fragment) OS=Nicotiana t... [more]
IMP3_MOUSE6.619e-1132.79U3 small nucleolar ribonucleoprotein protein IMP3 ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-895 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-18_A01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504406 ID=CF504406; Name=CF504406; organism=Citrus sinensis; type=EST; length=489bp
ACGTTTCATTCTACCGCAACTATGGGAAAACCTTCAAGAAGCCAAGACGT
CCCTATGAGAAGGAGCGATTGGATGCTGAGTTGAGACTTGTGGGAGAGTA
TGGGCTTCGCTGCAAGAGGGAACTCTGGAGGGTTCAATACGCACTGAGCC
GCATCCGAAATGCTGCGAGGGATCTTCTCACTCTCGATGAGAAGAACCCA
CGACGTATTTTTGAGGGTGAGGCCCTTCTCAGGAGGATGCACAGGTATGG
CTTCTTGGAAGAGAGCCAGAACAAGCTTGATTATGTGTTGGCCCTCACTG
TGGAGAACTTTCTTGAGCGTCGTCTTCAGACCCTTGTGTTCAAGAGTGGC
ATGGCTAAGTCAATTCACCATGCTCGAGTGCTCATCAGGCAGAGGCACAT
TAGGGTTGGAAGGCAGCTTGTCAACATTCCCTCATTTGTAGTGAGGGGTG
ATTCCCAGAAGCACATTGAATTCTCACTCACAAGTCCAT
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