CF504406
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF504406 vs. ExPASy Swiss-Prot
Match: RS4_METST (30S ribosomal protein S4P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rps4p PE=3 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 3.277e-18 Identity = 51/149 (34.23%), Postives = 85/149 (57.05%), Query Frame = 3 Query: 27 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRGDSQKHIEF 473 K + P P+ +R+ E RL +YGL+ K+E+W+ + + R R AR +L +D R + + LL + R GF+ + KL+ VL L VE+ L RRLQ+LVFK G++ + AR+ + HI + + +N P +V +++I+F Sbjct: 9 KQYDTPSHPWNADRIKEENRLANKYGLKNKKEIWKAESRVKRYRRDARIILGMDIDE--RADKEKELLDHLVRAGFISPNA-KLEEVLDLNVEDILRRRLQSLVFKRGLSHTAKEARLFVVHGHITLNGKKINAPGHLVEKADEENIDF 154
BLAST of CF504406 vs. ExPASy Swiss-Prot
Match: RS4_METS3 (30S ribosomal protein S4P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rps4p PE=3 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 3.277e-18 Identity = 57/158 (36.08%), Postives = 85/158 (53.80%), Query Frame = 3 Query: 15 RNYGKTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRGDSQKHIEFSLTSP 488 R K + P P+ ER+ E +L+ +YGL+ K+E+W+ + R AR LL D + E LL + R G L E L+ VL LTVE+ L RRLQT+V+K G+A++ AR+ + HI + + +N PS+VV + I F +SP Sbjct: 5 RKSRKKYNTPPHPWNAERIKNENKLMTKYGLKNKKEIWKADTLVRRYSREARYLLGFDMDQMQD--EKLELLGHLARTGVLPEGA-ALEEVLNLTVEDILRRRLQTIVYKKGLARTPKEARMFVVHGHITLNGKKINSPSYVVLKGQEDEIGFYPSSP 159
BLAST of CF504406 vs. ExPASy Swiss-Prot
Match: RS4_NATPD (30S ribosomal protein S4P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rps4p PE=3 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 5.590e-18 Identity = 56/155 (36.13%), Postives = 82/155 (52.90%), Query Frame = 3 Query: 27 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFE-GEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRGDSQKHIEFSLTSP 488 K ++ P P++ ER+ E L+ YGL K ELWR Q L R AR L+ + + E G L R+ R G L++ ++ LD +L+L V + LERRLQT+ ++ G+ + AR I H+ V V+ PS+ V + IEF TSP Sbjct: 8 KFYETPNHPFQGERIAEEGDLLSRYGLVNKEELWRAQSELRDYRREARRLIGEAQGDTVAAAEAGSEFLARLKRIGVLDD-EDSLDDILSLDVTDILERRLQTVAYRKGLGNTPQQARQFIAHGHVTVNGARVSAPSYKVDVAEEGEIEFDETSP 161
BLAST of CF504406 vs. ExPASy Swiss-Prot
Match: RS9_TOBAC (40S ribosomal protein S9 (Fragment) OS=Nicotiana tabacum GN=RPS9 PE=3 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 1.988e-15 Identity = 38/45 (84.44%), Postives = 43/45 (95.56%), Query Frame = 3 Query: 354 AKSIHHARVLIRQRHIRVGRQLVNIPSFVVRGDSQKHIEFSLTSP 488 AKS+HHARVLIRQRHIRVGRQ+VN+PSF+VR DSQKHI+FSL SP Sbjct: 1 AKSVHHARVLIRQRHIRVGRQVVNVPSFMVRLDSQKHIDFSLISP 45
BLAST of CF504406 vs. ExPASy Swiss-Prot
Match: IMP3_MOUSE (U3 small nucleolar ribonucleoprotein protein IMP3 OS=Mus musculus GN=Imp3 PE=2 SV=1) HSP 1 Score: 66.6254 bits (161), Expect = 6.619e-11 Identity = 40/122 (32.79%), Postives = 66/122 (54.10%), Query Frame = 3 Query: 78 ELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVV 443 ELR++ Y L+ + E R +R AR L L E++P R+ ALL +++ G L ++ L+ +++ +F RRL TL+ K MA+ + A + Q H+RVG +V P+F+V Sbjct: 30 ELRVLRRYRLQRREEYTRYNQLSRAVRELARRLRDLPERDPFRVRASAALLDKLYAMG-LVPTRGSLELCDSVSASSFCRRRLPTLLLKLRMAQHLQAAVAFVEQGHVRVGPDVVTDPAFLV 150 The following BLAST results are available for this feature:
BLAST of CF504406 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 85
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Sequences
The
following sequences are available for this feature:
EST sequence >CF504406 ID=CF504406; Name=CF504406; organism=Citrus sinensis; type=EST; length=489bpback to top |