CF504413

Overview
NameCF504413
Unique NameCF504413
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length338
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig540 contig Csv1_Contig540:1..338. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF504413 vs. ExPASy Swiss-Prot
Match: GLR22_ARATH (Glutamate receptor 2.2 OS=Arabidopsis thaliana GN=GLR2.2 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.165e-12
Identity = 31/86 (36.05%), Postives = 52/86 (60.47%), Query Frame = 1 
Query:    1 RGWVFPNNGRQLRIGVPNRVSYRDFV----FKVNGTDIVHGYCIDVFLAAVRLLPYAVPYKFIPYGDGHKNP--TYSELINQITTG 240
            +GW  P NG++LRIGVP R+ + D V      +  + +V G+CID F A ++ +PY V Y+F P+   +  P   +++L++Q+  G
Sbjct:  443 KGWEIPTNGKKLRIGVPKRIGFTDLVKVTRDPITNSTVVKGFCIDFFEAVIQAMPYDVSYEFFPFEKPNGEPAGNHNDLVHQVYLG 528
[Close]
BLAST of CF504413 vs. ExPASy Swiss-Prot
Match: GLR25_ARATH (Glutamate receptor 2.5 OS=Arabidopsis thaliana GN=GLR2.5 PE=1 SV=2)

HSP 1 Score: 65.4698 bits (158), Expect = 9.741e-11
Identity = 33/86 (38.37%), Postives = 51/86 (59.30%), Query Frame = 1 
Query:    1 RGWVFPNNGRQLRIGVPNRVSYRDFV--FKVNGTDI--VHGYCIDVFLAAVRLLPYAVPYKFIPYG--DGHKNPTYSELINQITTG 240
            +GW FP N ++LRI VP +  + +FV   K   T++  V G+CIDVF   +  +PYAV Y++IP+   DG    +Y E++  +  G
Sbjct:  447 KGWEFPTNAKKLRIAVPKKDGFNNFVEVTKDENTNVPTVTGFCIDVFNTVMSQMPYAVSYEYIPFDTPDGKPRGSYDEMVYNVFLG 532
The following BLAST results are available for this feature:
BLAST of CF504413 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
GLR22_ARATH5.165e-1236.05Glutamate receptor 2.2 OS=Arabidopsis thaliana GN=... [more]
GLR25_ARATH9.741e-1138.37Glutamate receptor 2.5 OS=Arabidopsis thaliana GN=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-902 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-18_A09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504413 ID=CF504413; Name=CF504413; organism=Citrus sinensis; type=EST; length=338bp
CGTGGTTGGGTCTTTCCAAATAATGGAAGGCAATTAAGAATTGGAGTCCC
AAATCGAGTTAGCTATCGAGACTTTGTCTTTAAAGTGAATGGTACTGATA
TAGTTCATGGGTATTGCATTGATGTATTCCTTGCAGCTGTACGTTTGCTT
CCATATGCAGTTCCTTATAAATTTATTCCATATGGAGATGGCCACAAGAA
TCCAACCTACAGCGAACTCATTAATCAAATCACAACTGGGGTTAGTAGAA
TCTTAACGAAGAAAGTTGCACAACTTACCAGGGTGAGCCTATAATTCCTA
CCAATCCTGTGAATATTATTTTGTAGGTTTTTGATGCT
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