CF504428

Overview
NameCF504428
Unique NameCF504428
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length224
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504428 vs. ExPASy Swiss-Prot
Match: UBA3_MOUSE (NEDD8-activating enzyme E1 catalytic subunit OS=Mus musculus GN=Uba3 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.373e-14
Identity = 38/74 (51.35%), Postives = 52/74 (70.27%), Query Frame = 2
Query:    2 ALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFN 223
            ALSGF+ IH+IDMDTI+VSNLNRQFLFR   VG+ KA+VA + +    P  ++  H   ++D  FN  F++QF+
Sbjct:   89 ALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDVGRPKAEVAAEFLNDRVPNCNVVPHFNKIQD--FNDTFYRQFH 160          
BLAST of CF504428 vs. ExPASy Swiss-Prot
Match: UBA3_PONAB (NEDD8-activating enzyme E1 catalytic subunit OS=Pongo abelii GN=UBA3 PE=2 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 9.629e-14
Identity = 37/74 (50.00%), Postives = 52/74 (70.27%), Query Frame = 2
Query:    2 ALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFN 223
            ALSGF+ IH+IDMDTI+VSNLNRQFLFR   +G+ KA+VA + +    P  ++  H   ++D  FN  F++QF+
Sbjct:   89 ALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHFNKIQD--FNDTFYRQFH 160          
BLAST of CF504428 vs. ExPASy Swiss-Prot
Match: UBA3_HUMAN (NEDD8-activating enzyme E1 catalytic subunit OS=Homo sapiens GN=UBA3 PE=1 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 9.629e-14
Identity = 37/74 (50.00%), Postives = 52/74 (70.27%), Query Frame = 2
Query:    2 ALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFN 223
            ALSGF+ IH+IDMDTI+VSNLNRQFLFR   +G+ KA+VA + +    P  ++  H   ++D  FN  F++QF+
Sbjct:   89 ALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHFNKIQD--FNDTFYRQFH 160          
BLAST of CF504428 vs. ExPASy Swiss-Prot
Match: UBA3_DANRE (NEDD8-activating enzyme E1 catalytic subunit OS=Danio rerio GN=uba3 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.642e-13
Identity = 38/74 (51.35%), Postives = 51/74 (68.92%), Query Frame = 2
Query:    2 ALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFN 223
            ALSGF+ IH++DMDTI+VSNLNRQFLFR   VG+ KA+VA D V    P  S+  H   ++D   +  F++QF+
Sbjct:   88 ALSGFRHIHVVDMDTIDVSNLNRQFLFRPKDVGRPKAEVAADFVNDRVPGCSVVPHFKKIQD--LDETFYRQFH 159          
BLAST of CF504428 vs. ExPASy Swiss-Prot
Match: UBA3_CAEEL (NEDD8-activating enzyme E1 catalytic subunit OS=Caenorhabditis elegans GN=uba-3 PE=2 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 1.642e-13
Identity = 39/74 (52.70%), Postives = 54/74 (72.97%), Query Frame = 2
Query:    2 ALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFN 223
            ALSGF+ I +IDMDTI+VSNLNRQFLFR+S VG+SKA+VA   V +      +TAH+  ++D     EF+++F+
Sbjct:   62 ALSGFRTIEVIDMDTIDVSNLNRQFLFRESDVGKSKAEVAAAFVQQRVVGCQVTAHNCRIEDK--GQEFYRKFS 133          
BLAST of CF504428 vs. ExPASy Swiss-Prot
Match: UBA3_SCHPO (NEDD8-activating enzyme E1 catalytic subunit OS=Schizosaccharomyces pombe GN=uba3 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.802e-13
Identity = 33/73 (45.21%), Postives = 52/73 (71.23%), Query Frame = 2
Query:    2 ALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQF 220
            ALSGF+D+ +IDMDTI+++NLNRQFLF +S++ + KA VA   ++K  P   +T  +  ++D    +EF+K+F
Sbjct:   64 ALSGFRDLSVIDMDTIDITNLNRQFLFNESNIDEPKANVAASMIMKRIPSTVVTPFYGKIQDK--TIEFYKEF 134          
BLAST of CF504428 vs. ExPASy Swiss-Prot
Match: UBA3_DROME (NEDD8-activating enzyme E1 catalytic subunit OS=Drosophila melanogaster GN=CG13343 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.816e-12
Identity = 35/74 (47.30%), Postives = 51/74 (68.92%), Query Frame = 2
Query:    2 ALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFN 223
            AL GF ++H+IDMDTIE+SNLNRQFLFR++ +G SKA+ A   +    P   +T H   ++D  F+  F++QF+
Sbjct:   68 ALMGFGNLHVIDMDTIELSNLNRQFLFRRTDIGASKAECAARFINARVPTCRVTPHFKKIQD--FDESFYQQFH 139          
BLAST of CF504428 vs. ExPASy Swiss-Prot
Match: UBA3_ARATH (NEDD8-activating enzyme E1 catalytic subunit OS=Arabidopsis thaliana GN=ECR1 PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 5.284e-12
Identity = 35/74 (47.30%), Postives = 51/74 (68.92%), Query Frame = 2
Query:    2 ALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFN 223
            ALSGF+++ +IDMD IEV+NLNRQFLFR   VG+ KA+VA   V++    + I  H + ++D +  +EF+  FN
Sbjct:   66 ALSGFRNLEVIDMDRIEVTNLNRQFLFRIEDVGKPKAEVAAKRVMERVSGVEIVPHFSRIEDKE--IEFYNDFN 137          
BLAST of CF504428 vs. ExPASy Swiss-Prot
Match: UBA3_DICDI (NEDD8-activating enzyme E1 catalytic subunit OS=Dictyostelium discoideum GN=uba3 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 9.012e-12
Identity = 34/73 (46.58%), Postives = 52/73 (71.23%), Query Frame = 2
Query:    2 ALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQF 220
            ALSGF++I +IDMDTI++SNLNRQFLFR+  VG+SKA+VA   +       ++T H   ++D   + ++++QF
Sbjct:   69 ALSGFRNIDVIDMDTIDISNLNRQFLFRRKDVGKSKAEVAAAFINSRITGCNVTPHKCRIQDK--DEDYYRQF 139          
The following BLAST results are available for this feature:
BLAST of CF504428 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
UBA3_MOUSE7.373e-1451.35NEDD8-activating enzyme E1 catalytic subunit OS=Mu... [more]
UBA3_PONAB9.629e-1450.00NEDD8-activating enzyme E1 catalytic subunit OS=Po... [more]
UBA3_HUMAN9.629e-1450.00NEDD8-activating enzyme E1 catalytic subunit OS=Ho... [more]
UBA3_DANRE1.642e-1351.35NEDD8-activating enzyme E1 catalytic subunit OS=Da... [more]
UBA3_CAEEL1.642e-1352.70NEDD8-activating enzyme E1 catalytic subunit OS=Ca... [more]
UBA3_SCHPO2.802e-1345.21NEDD8-activating enzyme E1 catalytic subunit OS=Sc... [more]
UBA3_DROME1.816e-1247.30NEDD8-activating enzyme E1 catalytic subunit OS=Dr... [more]
UBA3_ARATH5.284e-1247.30NEDD8-activating enzyme E1 catalytic subunit OS=Ar... [more]
UBA3_DICDI9.012e-1246.58NEDD8-activating enzyme E1 catalytic subunit OS=Di... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-917 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-18_C03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504428 ID=CF504428; Name=CF504428; organism=Citrus sinensis; type=EST; length=224bp
CGCTCTCTCCGGCTTTCAAGACATTCATATTATTGACATGGACACCATAG
AAGTCAGTAACCTGAATAGACAGTTTTTATTTCGTCAATCACATGTGGGA
CAGTCTAAGGCCAAGGTTGCTCGAGATGCTGTCTTAAAATTTAGGCCTCA
AATGAGCATCACAGCACATCATGCAAACGTCAAGGATCCTAAGTTCAATG
TGGAATTCTTTAAACAATTCAATG
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