CF504448

Overview
NameCF504448
Unique NameCF504448
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length264
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3557 contig Csv1_Contig3557:405..668. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504448 vs. ExPASy Swiss-Prot
Match: PSA7L_MACFA (Proteasome subunit alpha type-7-like OS=Macaca fascicularis GN=PSMA7L PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 9.859e-27
Identity = 57/78 (73.08%), Postives = 67/78 (85.90%), Query Frame = 3
Query:   30 ARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVRLDNHIALACAGLKA 263
            +RYDRAITVFSPDGHLFQVEYA EAV+KG+ AVG+RGT+ +VLGVEKKS  KLQD R+VRKI  LD+H+ +A AGL A
Sbjct:    3 SRYDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGIRGTNIVVLGVEKKSVAKLQDERTVRKICALDDHVCMAFAGLTA 80          
BLAST of CF504448 vs. ExPASy Swiss-Prot
Match: PSA7_CARAU (Proteasome subunit alpha type-7 OS=Carassius auratus GN=psma7 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 2.196e-26
Identity = 57/78 (73.08%), Postives = 65/78 (83.33%), Query Frame = 3
Query:   30 ARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVRLDNHIALACAGLKA 263
            ARYDRAITVFSPDGHLFQVEYA EAV+KG+ AVG+RG D +VLGVEKKS  KLQ+ R+VRKI  LD H+ +A AGL A
Sbjct:    3 ARYDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGIRGKDIVVLGVEKKSVAKLQEERTVRKICALDEHVCMAFAGLTA 80          
BLAST of CF504448 vs. ExPASy Swiss-Prot
Match: PSA7_CAEEL (Proteasome subunit alpha type-7 OS=Caenorhabditis elegans GN=pas-4 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 2.428e-25
Identity = 56/79 (70.89%), Postives = 65/79 (82.28%), Query Frame = 3
Query:   27 MARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVRLDNHIALACAGLKA 263
            M RYDRAIT+FSPDGHLFQVEYA EAV+KG+ AVGVRG D IV+GVEKKS   LQD R++RKI  +D+H+ LA AGL A
Sbjct:    1 MNRYDRAITIFSPDGHLFQVEYAQEAVKKGSTAVGVRGKDCIVIGVEKKSIPALQDDRTIRKIHMIDDHVMLAFAGLSA 79          
BLAST of CF504448 vs. ExPASy Swiss-Prot
Match: PSA7L_HUMAN (Proteasome subunit alpha type-7-like OS=Homo sapiens GN=PSMA8 PE=1 SV=3)

HSP 1 Score: 114.005 bits (284), Expect = 2.428e-25
Identity = 55/76 (72.37%), Postives = 65/76 (85.53%), Query Frame = 3
Query:   30 ARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVRLDNHIALACAGL 257
            +RYDRAITVFSPDGHLFQVEYA EAV+KG+ AVG+RGT+ +VLGVEKKS  KLQD R+VRKI  LD+H+ +A A L
Sbjct:    3 SRYDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGIRGTNIVVLGVEKKSVAKLQDERTVRKICALDDHVCMAFAVL 78          
BLAST of CF504448 vs. ExPASy Swiss-Prot
Match: PSA7_MOUSE (Proteasome subunit alpha type-7 OS=Mus musculus GN=Psma7 PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 3.172e-25
Identity = 56/76 (73.68%), Postives = 64/76 (84.21%), Query Frame = 3
Query:   36 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVRLDNHIALACAGLKA 263
            YDRAITVFSPDGHLFQVEYA EAV+KG+ AVGVRG D +VLGVEKKS  KLQD R+VRKI  LD+++ +A AGL A
Sbjct:    3 YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGKDIVVLGVEKKSVAKLQDERTVRKICALDDNVCMAFAGLTA 78          
BLAST of CF504448 vs. ExPASy Swiss-Prot
Match: PSA7_HUMAN (Proteasome subunit alpha type-7 OS=Homo sapiens GN=PSMA7 PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 3.172e-25
Identity = 56/76 (73.68%), Postives = 64/76 (84.21%), Query Frame = 3
Query:   36 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVRLDNHIALACAGLKA 263
            YDRAITVFSPDGHLFQVEYA EAV+KG+ AVGVRG D +VLGVEKKS  KLQD R+VRKI  LD+++ +A AGL A
Sbjct:    3 YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGRDIVVLGVEKKSVAKLQDERTVRKICALDDNVCMAFAGLTA 78          
BLAST of CF504448 vs. ExPASy Swiss-Prot
Match: PSA7_CHICK (Proteasome subunit alpha type-7 OS=Gallus gallus GN=PSMA7 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 3.172e-25
Identity = 56/76 (73.68%), Postives = 64/76 (84.21%), Query Frame = 3
Query:   36 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVRLDNHIALACAGLKA 263
            YDRAITVFSPDGHLFQVEYA EAV+KG+ AVGVRG D +VLGVEKKS  KLQD R+VRKI  LD+++ +A AGL A
Sbjct:    3 YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGKDIVVLGVEKKSVAKLQDERTVRKICALDDNVCMAFAGLTA 78          
BLAST of CF504448 vs. ExPASy Swiss-Prot
Match: PSA7_BOVIN (Proteasome subunit alpha type-7 OS=Bos taurus GN=PSMA7 PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 3.172e-25
Identity = 56/76 (73.68%), Postives = 64/76 (84.21%), Query Frame = 3
Query:   36 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVRLDNHIALACAGLKA 263
            YDRAITVFSPDGHLFQVEYA EAV+KG+ AVGVRG D +VLGVEKKS  KLQD R+VRKI  LD+++ +A AGL A
Sbjct:    3 YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGKDIVVLGVEKKSVAKLQDERTVRKICALDDNVCMAFAGLTA 78          
BLAST of CF504448 vs. ExPASy Swiss-Prot
Match: PSA71_DROME (Proteasome subunit alpha type-7-1 OS=Drosophila melanogaster GN=Pros28.1 PE=1 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 3.172e-25
Identity = 54/78 (69.23%), Postives = 64/78 (82.05%), Query Frame = 3
Query:   30 ARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVRLDNHIALACAGLKA 263
            +RYDRA+T+FSPDGHL QVEYA EAVRKG+ AVGVRG + +VLGVEKKS  +LQ+ R VRKI  LDNH+ +A AGL A
Sbjct:    3 SRYDRAVTIFSPDGHLLQVEYAQEAVRKGSTAVGVRGANCVVLGVEKKSVAQLQEDRKVRKICMLDNHVVMAFAGLTA 80          
BLAST of CF504448 vs. ExPASy Swiss-Prot
Match: PSA7_PONAB (Proteasome subunit alpha type-7 OS=Pongo abelii GN=PSMA7 PE=2 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 4.142e-25
Identity = 55/76 (72.37%), Postives = 64/76 (84.21%), Query Frame = 3
Query:   36 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVRLDNHIALACAGLKA 263
            YDRAITVFSPDGHLFQVEYA EA++KG+ AVGVRG D +VLGVEKKS  KLQD R+VRKI  LD+++ +A AGL A
Sbjct:    3 YDRAITVFSPDGHLFQVEYAQEAIKKGSTAVGVRGRDIVVLGVEKKSVAKLQDERTVRKICALDDNVCMAFAGLTA 78          
The following BLAST results are available for this feature:
BLAST of CF504448 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 130
Match NameE-valueIdentityDescription
PSA7L_MACFA9.859e-2773.08Proteasome subunit alpha type-7-like OS=Macaca fas... [more]
PSA7_CARAU2.196e-2673.08Proteasome subunit alpha type-7 OS=Carassius aurat... [more]
PSA7_CAEEL2.428e-2570.89Proteasome subunit alpha type-7 OS=Caenorhabditis ... [more]
PSA7L_HUMAN2.428e-2572.37Proteasome subunit alpha type-7-like OS=Homo sapie... [more]
PSA7_MOUSE3.172e-2573.68Proteasome subunit alpha type-7 OS=Mus musculus GN... [more]
PSA7_HUMAN3.172e-2573.68Proteasome subunit alpha type-7 OS=Homo sapiens GN... [more]
PSA7_CHICK3.172e-2573.68Proteasome subunit alpha type-7 OS=Gallus gallus G... [more]
PSA7_BOVIN3.172e-2573.68Proteasome subunit alpha type-7 OS=Bos taurus GN=P... [more]
PSA71_DROME3.172e-2569.23Proteasome subunit alpha type-7-1 OS=Drosophila me... [more]
PSA7_PONAB4.142e-2572.37Proteasome subunit alpha type-7 OS=Pongo abelii GN... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-937 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-18_D11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504448 ID=CF504448; Name=CF504448; organism=Citrus sinensis; type=EST; length=264bp
GAAGAGGAAAATTAGAGAGATTTGACATGGCGAGATACGATCGAGCAATC
ACTGTATTTTCACCGGATGGCCACCTGTTCCAAGTGGAATACGCACTAGA
GGCCGTACGCAAAGGCAACGCCGCCGTCGGCGTGCGCGGCACCGACACCA
TCGTTCTTGGCGTCGAAAAGAAATCCACTGTCAAGCTTCAGGACTCCAGA
TCAGTGAGGAAGATTGTCAGGTTGGATAATCATATTGCATTGGCCTGTGC
TGGACTTAAAGCAG
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