CF504448

Overview
NameCF504448
Unique NameCF504448
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length264
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504448 vs. ExPASy Swiss-Prot
Match: PSA3_HUMAN (Proteasome subunit alpha type-3 OS=Homo sapiens GN=PSMA3 PE=1 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 3.637e-13
Identity = 34/76 (44.74%), Postives = 50/76 (65.79%), Query Frame = 3
Query:   36 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVRLDNHIALACAGLKA 263
            YD + + FSPDG +FQVEYA++AV   + A+G+R  D +V GVEK    KL +  S +++  +D H+ +A AGL A
Sbjct:    8 YDLSASTFSPDGRVFQVEYAMKAVENSSTAIGIRCKDGVVFGVEKLVLSKLYEEGSNKRLFNVDRHVGMAVAGLLA 83          
BLAST of CF504448 vs. ExPASy Swiss-Prot
Match: PSA3_BOVIN (Proteasome subunit alpha type-3 OS=Bos taurus GN=PSMA3 PE=1 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 3.637e-13
Identity = 34/76 (44.74%), Postives = 50/76 (65.79%), Query Frame = 3
Query:   36 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVRLDNHIALACAGLKA 263
            YD + + FSPDG +FQVEYA++AV   + A+G+R  D +V GVEK    KL +  S +++  +D H+ +A AGL A
Sbjct:    8 YDLSASTFSPDGRVFQVEYAMKAVENSSTAIGIRCKDGVVFGVEKLVLSKLYEEGSNKRLFNVDRHVGMAVAGLLA 83          
BLAST of CF504448 vs. ExPASy Swiss-Prot
Match: PSMA_AERPE (Proteasome subunit alpha OS=Aeropyrum pernix GN=psmA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.750e-13
Identity = 33/74 (44.59%), Postives = 51/74 (68.92%), Query Frame = 3
Query:   36 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVRLDNHIALACAGL 257
            YDRA T+FSP+G L+QV YA EAV+KG  ++G++  + +V+  EK+    L D   + KI ++D+HI +A AG+
Sbjct:   12 YDRAATIFSPEGDLYQVRYAFEAVKKGWTSLGIKTNEGVVIAAEKRFIGPLVDIDDIDKIYKIDDHIGVAFAGM 85          
BLAST of CF504448 vs. ExPASy Swiss-Prot
Match: PSA4_YEAST (Proteasome component Y13 OS=Saccharomyces cerevisiae GN=PRE9 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.058e-12
Identity = 36/78 (46.15%), Postives = 51/78 (65.38%), Query Frame = 3
Query:   33 RYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKST-VKLQDSRSVRKIVRLDNHIALACAGLKA 263
            RYD   T+FSP+G L+QVEYALE++     A+G+  +D IVL  E+K T   L+   S  K+ +L++ IA+A AGL A
Sbjct:    5 RYDSRTTIFSPEGRLYQVEYALESISHAGTAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLNDKIAVAVAGLTA 82          
BLAST of CF504448 vs. ExPASy Swiss-Prot
Match: PSA1B_ARATH (Proteasome subunit alpha type-1-B OS=Arabidopsis thaliana GN=PAF2 PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 1.058e-12
Identity = 37/77 (48.05%), Postives = 53/77 (68.83%), Query Frame = 3
Query:   33 RYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVRLDNHIALACAGLKA 263
            +YD  +T +SP G LFQVEYA+EAV++G+AA+G+R    +VL    K+  +L  S   RKI ++D+HI +A AGL A
Sbjct:    5 QYDTDVTTWSPTGRLFQVEYAMEAVKQGSAAIGLRSRSHVVLACVNKAQSEL--SSHQRKIFKVDDHIGVAIAGLTA 79          
BLAST of CF504448 vs. ExPASy Swiss-Prot
Match: PSA1A_ARATH (Proteasome subunit alpha type-1-A OS=Arabidopsis thaliana GN=PAF1 PE=1 SV=3)

HSP 1 Score: 72.0182 bits (175), Expect = 1.058e-12
Identity = 37/77 (48.05%), Postives = 53/77 (68.83%), Query Frame = 3
Query:   33 RYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVRLDNHIALACAGLKA 263
            +YD  +T +SP G LFQVEYA+EAV++G+AA+G+R    +VL    K+  +L  S   RKI ++D+HI +A AGL A
Sbjct:    5 QYDTDVTTWSPTGRLFQVEYAMEAVKQGSAAIGLRSRSHVVLACVNKAQSEL--SSHQRKIFKVDDHIGVAIAGLTA 79          
BLAST of CF504448 vs. ExPASy Swiss-Prot
Match: PSMA2_HALVO (Proteasome subunit alpha 2 OS=Halobacterium volcanii GN=psmA2 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.805e-12
Identity = 33/81 (40.74%), Postives = 52/81 (64.20%), Query Frame = 3
Query:   12 LERFDMARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVRLDNHIALACAG 254
            + R D   YDR  ++FSPDG ++QVEYA EAV++G   +GVR  D +VL   + +  +L ++ S+ K+ +LD+ +  A AG
Sbjct:    1 MNRNDKQAYDRGTSLFSPDGRIYQVEYAREAVKRGAPVLGVRTADGVVLAALRSTPSELMEAESIEKLHKLDDALGAATAG 81          
BLAST of CF504448 vs. ExPASy Swiss-Prot
Match: PSA2_TRYBB (Proteasome subunit alpha type-2 OS=Trypanosoma brucei brucei PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.079e-12
Identity = 32/77 (41.56%), Postives = 47/77 (61.04%), Query Frame = 3
Query:   27 MARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVRLDNHIALACAGL 257
            M+     +T FSP G L Q+EYA  A  KG  A+GV+ TD +V+  EKK+T  L DS ++ K+  LD+H+    +G+
Sbjct:    1 MSESSYGLTTFSPSGRLVQIEYATTAASKGTTALGVKATDGVVIAAEKKTTSPLADSLTLHKVFALDDHVGCTYSGI 77          
BLAST of CF504448 vs. ExPASy Swiss-Prot
Match: PSA6A_ARATH (Proteasome subunit alpha type-6-A OS=Arabidopsis thaliana GN=PAA1 PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 6.859e-12
Identity = 37/85 (43.53%), Postives = 52/85 (61.18%), Query Frame = 3
Query:   12 LERFDMARYDRAITVFSPDGHLFQVEYALEAVR-KGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVRLDNHIALACAGLKA 263
            + R   A YDR IT+FSP+G LFQVEYA +AV+  G  ++GVRG D++ +  +KK   KL D  SV  +  +  +I L   G+ A
Sbjct:    1 MSRGSGAGYDRHITIFSPEGRLFQVEYAFKAVKTAGITSIGVRGKDSVCVVTQKKVPDKLLDQSSVTHLFPITKYIGLVATGITA 85          
BLAST of CF504448 vs. ExPASy Swiss-Prot
Match: PSA3_ORYSJ (Proteasome subunit alpha type-3 OS=Oryza sativa subsp. japonica GN=PAG1 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.859e-12
Identity = 38/76 (50.00%), Postives = 47/76 (61.84%), Query Frame = 3
Query:   36 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVRLDNHIALACAGLKA 263
            YD ++T FSPDG +FQVEYA +AV      VG++  D IVLGVEK  T K+    S R+I  +  H  LA AGL A
Sbjct:    8 YDLSVTTFSPDGRVFQVEYATKAVDNSGTVVGIKCKDGIVLGVEKLVTSKMMLEGSNRRIHSVHWHSGLAVAGLAA 83          
The following BLAST results are available for this feature:
BLAST of CF504448 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 130
Match NameE-valueIdentityDescription
PSA3_HUMAN3.637e-1344.74Proteasome subunit alpha type-3 OS=Homo sapiens GN... [more]
PSA3_BOVIN3.637e-1344.74Proteasome subunit alpha type-3 OS=Bos taurus GN=P... [more]
PSMA_AERPE4.750e-1344.59Proteasome subunit alpha OS=Aeropyrum pernix GN=ps... [more]
PSA4_YEAST1.058e-1246.15Proteasome component Y13 OS=Saccharomyces cerevisi... [more]
PSA1B_ARATH1.058e-1248.05Proteasome subunit alpha type-1-B OS=Arabidopsis t... [more]
PSA1A_ARATH1.058e-1248.05Proteasome subunit alpha type-1-A OS=Arabidopsis t... [more]
PSMA2_HALVO1.805e-1240.74Proteasome subunit alpha 2 OS=Halobacterium volcan... [more]
PSA2_TRYBB3.079e-1241.56Proteasome subunit alpha type-2 OS=Trypanosoma bru... [more]
PSA6A_ARATH6.859e-1243.53Proteasome subunit alpha type-6-A OS=Arabidopsis t... [more]
PSA3_ORYSJ6.859e-1250.00Proteasome subunit alpha type-3 OS=Oryza sativa su... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-937 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-18_D11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504448 ID=CF504448; Name=CF504448; organism=Citrus sinensis; type=EST; length=264bp
GAAGAGGAAAATTAGAGAGATTTGACATGGCGAGATACGATCGAGCAATC
ACTGTATTTTCACCGGATGGCCACCTGTTCCAAGTGGAATACGCACTAGA
GGCCGTACGCAAAGGCAACGCCGCCGTCGGCGTGCGCGGCACCGACACCA
TCGTTCTTGGCGTCGAAAAGAAATCCACTGTCAAGCTTCAGGACTCCAGA
TCAGTGAGGAAGATTGTCAGGTTGGATAATCATATTGCATTGGCCTGTGC
TGGACTTAAAGCAG
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