CF504448

Overview
NameCF504448
Unique NameCF504448
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length264
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504448 vs. ExPASy Swiss-Prot
Match: PSA1_DROME (Proteasome subunit alpha type-1 OS=Drosophila melanogaster GN=Pros35 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.859e-12
Identity = 36/77 (46.75%), Postives = 52/77 (67.53%), Query Frame = 3
Query:   33 RYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVRLDNHIALACAGLKA 263
            +YD  +TV+SP G L QVEYA+EAV+ G A VG++  D  VL    K T +L D++  RKI+ +D+H+ ++ AGL A
Sbjct:    5 QYDSDVTVWSPQGRLHQVEYAMEAVKLGTATVGLKNKDYAVLVALCKPTSELSDTQ--RKIIPIDDHLGISIAGLTA 79          
BLAST of CF504448 vs. ExPASy Swiss-Prot
Match: PSA3_DROME (Proteasome subunit alpha type-3 OS=Drosophila melanogaster GN=Prosalpha7 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.959e-12
Identity = 33/76 (43.42%), Postives = 49/76 (64.47%), Query Frame = 3
Query:   36 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVRLDNHIALACAGLKA 263
            YD + + FSPDG +FQ++YA +AV K    +G+RG D +VL VEK  T KL +  +  +I  ++ +I +A AGL A
Sbjct:    8 YDLSASQFSPDGRVFQIDYASKAVEKSGTVIGIRGKDAVVLAVEKIITSKLYEPDAGGRIFTIEKNIGMAVAGLVA 83          
BLAST of CF504448 vs. ExPASy Swiss-Prot
Match: PSA1_TRYCR (Proteasome subunit alpha type-1 OS=Trypanosoma cruzi PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.959e-12
Identity = 38/77 (49.35%), Postives = 49/77 (63.64%), Query Frame = 3
Query:   33 RYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVRLDNHIALACAGLKA 263
            +YD   T +SP G LFQVEYA EAV  G+AAVG +  D +VL   K+S V  Q S    K+ +LD+H+ +A AGL A
Sbjct:    5 QYDTNTTTWSPTGRLFQVEYANEAVNNGSAAVGAKNKDFVVLTALKRSPV-AQFSSYQEKVFKLDDHVGMAIAGLVA 80          
BLAST of CF504448 vs. ExPASy Swiss-Prot
Match: PSA3_SPIOL (Proteasome subunit alpha type-3 OS=Spinacia oleracea GN=PAG1 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.170e-11
Identity = 36/76 (47.37%), Postives = 47/76 (61.84%), Query Frame = 3
Query:   36 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVRLDNHIALACAGLKA 263
            YD ++T FSPDG +FQ+EYA +AV     AVG++  D IVLGVEK    K+    S R+I  +  H  +A AGL A
Sbjct:    8 YDLSVTTFSPDGRVFQIEYAAKAVDNSGTAVGIKCKDGIVLGVEKLIQSKMMLPGSNRRIHSVHRHSGMAVAGLAA 83          
BLAST of CF504448 vs. ExPASy Swiss-Prot
Match: PSA6_ORYSJ (Proteasome subunit alpha type-6 OS=Oryza sativa subsp. japonica GN=PAA1 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.528e-11
Identity = 36/79 (45.57%), Postives = 50/79 (63.29%), Query Frame = 3
Query:   30 ARYDRAITVFSPDGHLFQVEYALEAVRK-GNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVRLDNHIALACAGLKA 263
            A YDR IT+FSP+G L+QVEYA +AV+  G  ++GVRG D++ +  +KK   KL D  SV  +  +  +I L   GL A
Sbjct:    7 AGYDRHITIFSPEGRLYQVEYAFKAVKSAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYIGLLATGLTA 85          
BLAST of CF504448 vs. ExPASy Swiss-Prot
Match: PSA5_ENTHI (Proteasome subunit alpha type-5 OS=Entamoeba histolytica PE=3 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 1.528e-11
Identity = 31/75 (41.33%), Postives = 48/75 (64.00%), Query Frame = 3
Query:   39 DRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVRLDNHIALACAGLKA 263
            D  +  FS +G LFQVEYA EA++ G+  +G++  + +VL VEK+ +  L    S+ KI+ +D+HI  A +GL A
Sbjct:    9 DHGVNTFSSEGRLFQVEYATEAMKLGSTVIGIQTKEGVVLAVEKRISSPLMLGSSIEKIIEIDDHIGAAVSGLTA 83          
BLAST of CF504448 vs. ExPASy Swiss-Prot
Match: PSA6B_ARATH (Proteasome subunit alpha type-6-B OS=Arabidopsis thaliana GN=PAA2 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.996e-11
Identity = 36/85 (42.35%), Postives = 52/85 (61.18%), Query Frame = 3
Query:   12 LERFDMARYDRAITVFSPDGHLFQVEYALEAVR-KGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVRLDNHIALACAGLKA 263
            + R   A YDR IT+FSP+G LFQVEYA +AV+  G  ++GVRG D++ +  +KK   KL D  SV  +  +  ++ L   G+ A
Sbjct:    1 MSRGSGAGYDRHITIFSPEGRLFQVEYAFKAVKAAGITSIGVRGKDSVCVVTQKKVPDKLLDQSSVSHLFPVTKYLGLLATGMTA 85          
BLAST of CF504448 vs. ExPASy Swiss-Prot
Match: PSA4_SCHPO (Probable proteasome subunit alpha type-4 OS=Schizosaccharomyces pombe GN=SPAC13C5.01c PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.607e-11
Identity = 35/77 (45.45%), Postives = 47/77 (61.04%), Query Frame = 3
Query:   36 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVK-LQDSRSVRKIVRLDNHIALACAGLKA 263
            YD   T+FSP+G L+QVEYALEA+     A+G+   D IVL  EKK T K L+   S  K+  + +++  A AGL A
Sbjct:    5 YDSRTTIFSPEGRLYQVEYALEAINHAGVALGIVAKDGIVLAAEKKVTSKLLEQEESAEKLYHIGDNMLCAVAGLTA 81          
BLAST of CF504448 vs. ExPASy Swiss-Prot
Match: PSA1_TRYBR (Proteasome subunit alpha type-1 OS=Trypanosoma brucei rhodesiense PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.607e-11
Identity = 37/77 (48.05%), Postives = 48/77 (62.34%), Query Frame = 3
Query:   33 RYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVRLDNHIALACAGLKA 263
            +YD   T +SP G LFQVEYA EAV  G+AAVGV+G D +VL   K++ V    S    K  +LD H+ +A +GL A
Sbjct:    5 QYDTDTTTWSPTGRLFQVEYANEAVNNGSAAVGVKGADYVVLTALKRNPVSGLSSYQ-EKAFKLDEHVGMAISGLVA 80          
BLAST of CF504448 vs. ExPASy Swiss-Prot
Match: PSA6_TOBAC (Proteasome subunit alpha type-6 OS=Nicotiana tabacum GN=PAA1 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.404e-11
Identity = 34/77 (44.16%), Postives = 49/77 (63.64%), Query Frame = 3
Query:   36 YDRAITVFSPDGHLFQVEYALEAVR-KGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVRLDNHIALACAGLKA 263
            YDR IT+FSP+G LFQVEYA +AV+  G  ++GVRG D++ +  +KK   KL D  SV  +  +  ++ L   G+ A
Sbjct:    9 YDRHITIFSPEGRLFQVEYAFKAVKAAGITSIGVRGKDSVCVVTQKKVPDKLLDQTSVSHLFPITKYLGLLATGMTA 85          
The following BLAST results are available for this feature:
BLAST of CF504448 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 130
Match NameE-valueIdentityDescription
PSA1_DROME6.859e-1246.75Proteasome subunit alpha type-1 OS=Drosophila mela... [more]
PSA3_DROME8.959e-1243.42Proteasome subunit alpha type-3 OS=Drosophila mela... [more]
PSA1_TRYCR8.959e-1249.35Proteasome subunit alpha type-1 OS=Trypanosoma cru... [more]
PSA3_SPIOL1.170e-1147.37Proteasome subunit alpha type-3 OS=Spinacia olerac... [more]
PSA6_ORYSJ1.528e-1145.57Proteasome subunit alpha type-6 OS=Oryza sativa su... [more]
PSA5_ENTHI1.528e-1141.33Proteasome subunit alpha type-5 OS=Entamoeba histo... [more]
PSA6B_ARATH1.996e-1142.35Proteasome subunit alpha type-6-B OS=Arabidopsis t... [more]
PSA4_SCHPO2.607e-1145.45Probable proteasome subunit alpha type-4 OS=Schizo... [more]
PSA1_TRYBR2.607e-1148.05Proteasome subunit alpha type-1 OS=Trypanosoma bru... [more]
PSA6_TOBAC3.404e-1144.16Proteasome subunit alpha type-6 OS=Nicotiana tabac... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-937 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-18_D11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504448 ID=CF504448; Name=CF504448; organism=Citrus sinensis; type=EST; length=264bp
GAAGAGGAAAATTAGAGAGATTTGACATGGCGAGATACGATCGAGCAATC
ACTGTATTTTCACCGGATGGCCACCTGTTCCAAGTGGAATACGCACTAGA
GGCCGTACGCAAAGGCAACGCCGCCGTCGGCGTGCGCGGCACCGACACCA
TCGTTCTTGGCGTCGAAAAGAAATCCACTGTCAAGCTTCAGGACTCCAGA
TCAGTGAGGAAGATTGTCAGGTTGGATAATCATATTGCATTGGCCTGTGC
TGGACTTAAAGCAG
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