CF504448

Overview
NameCF504448
Unique NameCF504448
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length264
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504448 vs. ExPASy Swiss-Prot
Match: PSA3_ARATH (Proteasome subunit alpha type-3 OS=Arabidopsis thaliana GN=PAG1 PE=1 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 3.404e-11
Identity = 34/76 (44.74%), Postives = 46/76 (60.53%), Query Frame = 3
Query:   36 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVRLDNHIALACAGLKA 263
            YD ++T FSPDG +FQ+EYA +AV      VG++  D IV+GVEK    K+    S R+I  +  H  +A AGL A
Sbjct:    8 YDLSVTTFSPDGRVFQIEYAAKAVDNSGTVVGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHAGMAVAGLAA 83          
BLAST of CF504448 vs. ExPASy Swiss-Prot
Match: PSA2_NEUCR (Probable proteasome subunit alpha type-2 OS=Neurospora crassa GN=B14D6.510 PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.807e-11
Identity = 33/75 (44.00%), Postives = 48/75 (64.00%), Query Frame = 3
Query:   33 RYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVRLDNHIALACAGL 257
            RY  ++T FSP G L Q+EYAL AV +G  A+G++ T+ IVL  EKKS+  L D  S+ KI  +  +I +  +G+
Sbjct:    4 RYSFSLTTFSPSGKLVQIEYALNAVNQGVTALGIKATNGIVLATEKKSSSPLADPSSLSKISLITPNIGMVYSGM 78          
BLAST of CF504448 vs. ExPASy Swiss-Prot
Match: PSA1_MACFA (Proteasome subunit alpha type-1 OS=Macaca fascicularis GN=PSMA1 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.807e-11
Identity = 33/77 (42.86%), Postives = 52/77 (67.53%), Query Frame = 3
Query:   33 RYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVRLDNHIALACAGLKA 263
            +YD  +TV+SP G + Q+EYA+EAV++G+A VG++     VL   K++  +L   R  +KI+ +DNHI ++ AGL A
Sbjct:    5 QYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAAHR--KKILHVDNHIGISIAGLTA 79          
BLAST of CF504448 vs. ExPASy Swiss-Prot
Match: PSA4_CAEEL (Proteasome subunit alpha type-4 OS=Caenorhabditis elegans GN=pas-3 PE=2 SV=2)

HSP 1 Score: 65.855 bits (159), Expect = 7.584e-11
Identity = 32/78 (41.03%), Postives = 49/78 (62.82%), Query Frame = 3
Query:   33 RYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVK-LQDSRSVRKIVRLDNHIALACAGLKA 263
            RYD   T+FSP+G L+QVEYA+EA+      +G+  ++ IV+  E+K+  K L DS    K+ RL ++I+   AG+ A
Sbjct:    4 RYDSRTTIFSPEGRLYQVEYAMEAISHAGTCLGILSSEGIVVAAERKNVHKLLDDSVMTEKVYRLSDNISCTVAGITA 81          
BLAST of CF504448 vs. ExPASy Swiss-Prot
Match: PSA6_RAT (Proteasome subunit alpha type-6 OS=Rattus norvegicus GN=Psma6 PE=1 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.905e-11
Identity = 34/85 (40.00%), Postives = 51/85 (60.00%), Query Frame = 3
Query:   12 LERFDMARYDRAITVFSPDGHLFQVEYALEAVRKGN-AAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVRLDNHIALACAGLKA 263
            + R   A +DR IT+FSP+G L+QVEYA +A+ +G   +V VRG D  V+  +KK   KL DS +V  + ++  +I     G+ A
Sbjct:    1 MSRGSSAGFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTHLFKITENIGCVMTGMTA 85          
BLAST of CF504448 vs. ExPASy Swiss-Prot
Match: PSA6_HUMAN (Proteasome subunit alpha type-6 OS=Homo sapiens GN=PSMA6 PE=1 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.905e-11
Identity = 34/85 (40.00%), Postives = 51/85 (60.00%), Query Frame = 3
Query:   12 LERFDMARYDRAITVFSPDGHLFQVEYALEAVRKGN-AAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVRLDNHIALACAGLKA 263
            + R   A +DR IT+FSP+G L+QVEYA +A+ +G   +V VRG D  V+  +KK   KL DS +V  + ++  +I     G+ A
Sbjct:    1 MSRGSSAGFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTHLFKITENIGCVMTGMTA 85          
BLAST of CF504448 vs. ExPASy Swiss-Prot
Match: PSA6_BOVIN (Proteasome subunit alpha type-6 OS=Bos taurus GN=PSMA6 PE=1 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.905e-11
Identity = 34/85 (40.00%), Postives = 51/85 (60.00%), Query Frame = 3
Query:   12 LERFDMARYDRAITVFSPDGHLFQVEYALEAVRKGN-AAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVRLDNHIALACAGLKA 263
            + R   A +DR IT+FSP+G L+QVEYA +A+ +G   +V VRG D  V+  +KK   KL DS +V  + ++  +I     G+ A
Sbjct:    1 MSRGSSAGFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTHLFKITENIGCVMTGMTA 85          
BLAST of CF504448 vs. ExPASy Swiss-Prot
Match: PSA3_DICDI (Proteasome subunit alpha type-3 OS=Dictyostelium discoideum GN=psmA3 PE=2 SV=2)

HSP 1 Score: 65.4698 bits (158), Expect = 9.905e-11
Identity = 32/76 (42.11%), Postives = 46/76 (60.53%), Query Frame = 3
Query:   36 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVRLDNHIALACAGLKA 263
            YD  ++ +SPDG LFQV+YA +AV      V ++  D +VLGVEK    K+  S S R++  +D H+ +A AG  A
Sbjct:    8 YDLYVSTYSPDGKLFQVDYANKAVENSGTLVAIKAKDGVVLGVEKLVPSKMLCSGSNRRVHHIDTHVGVAIAGFLA 83          
BLAST of CF504448 vs. ExPASy Swiss-Prot
Match: PSA3_ACACA (Proteasome subunit alpha type-3 (Fragment) OS=Acanthamoeba castellanii PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.905e-11
Identity = 35/76 (46.05%), Postives = 46/76 (60.53%), Query Frame = 3
Query:   36 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVRLDNHIALACAGLKA 263
            YD + T FSPDG +FQVEYA +AV     A+G+R  D +VL VEK    K+    + R+I  +D H  LA +GL A
Sbjct:    6 YDLSSTTFSPDGRVFQVEYAAKAVDNSGTALGLRVKDGVVLAVEKLLVSKMLVPNTNRRIHTVDRHCGLAMSGLVA 81          
BLAST of CF504448 vs. ExPASy Swiss-Prot
Match: PSA1_ORYSJ (Proteasome subunit alpha type-1 OS=Oryza sativa subsp. japonica GN=PAF1 PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.905e-11
Identity = 35/77 (45.45%), Postives = 49/77 (63.64%), Query Frame = 3
Query:   33 RYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVRLDNHIALACAGLKA 263
            +YD  +T +SP G LFQVEYA+EAV++G+A VG+R     VL    K+  +L  S   RK+ R+ +H  +A AGL A
Sbjct:    5 QYDTDVTTWSPAGRLFQVEYAMEAVKQGSACVGLRSRTHAVLAAANKAASEL--SSHQRKVFRVADHAGVALAGLTA 79          
The following BLAST results are available for this feature:
BLAST of CF504448 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 130
Match NameE-valueIdentityDescription
PSA3_ARATH3.404e-1144.74Proteasome subunit alpha type-3 OS=Arabidopsis tha... [more]
PSA2_NEUCR5.807e-1144.00Probable proteasome subunit alpha type-2 OS=Neuros... [more]
PSA1_MACFA5.807e-1142.86Proteasome subunit alpha type-1 OS=Macaca fascicul... [more]
PSA4_CAEEL7.584e-1141.03Proteasome subunit alpha type-4 OS=Caenorhabditis ... [more]
PSA6_RAT9.905e-1140.00Proteasome subunit alpha type-6 OS=Rattus norvegic... [more]
PSA6_HUMAN9.905e-1140.00Proteasome subunit alpha type-6 OS=Homo sapiens GN... [more]
PSA6_BOVIN9.905e-1140.00Proteasome subunit alpha type-6 OS=Bos taurus GN=P... [more]
PSA3_DICDI9.905e-1142.11Proteasome subunit alpha type-3 OS=Dictyostelium d... [more]
PSA3_ACACA9.905e-1146.05Proteasome subunit alpha type-3 (Fragment) OS=Acan... [more]
PSA1_ORYSJ9.905e-1145.45Proteasome subunit alpha type-1 OS=Oryza sativa su... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-937 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-18_D11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504448 ID=CF504448; Name=CF504448; organism=Citrus sinensis; type=EST; length=264bp
GAAGAGGAAAATTAGAGAGATTTGACATGGCGAGATACGATCGAGCAATC
ACTGTATTTTCACCGGATGGCCACCTGTTCCAAGTGGAATACGCACTAGA
GGCCGTACGCAAAGGCAACGCCGCCGTCGGCGTGCGCGGCACCGACACCA
TCGTTCTTGGCGTCGAAAAGAAATCCACTGTCAAGCTTCAGGACTCCAGA
TCAGTGAGGAAGATTGTCAGGTTGGATAATCATATTGCATTGGCCTGTGC
TGGACTTAAAGCAG
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