CF504448

Overview
NameCF504448
Unique NameCF504448
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length264
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504448 vs. ExPASy Swiss-Prot
Match: PSA7_TRYBB (Proteasome subunit alpha type-7 OS=Trypanosoma brucei brucei GN=PSA4 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 5.410e-25
Identity = 57/76 (75.00%), Postives = 62/76 (81.58%), Query Frame = 3
Query:   36 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVRLDNHIALACAGLKA 263
            YDRAITVFSPDGHLFQVEYA EAVRKG  AVGV+G D+I+  VEKKS  KLQDSR+ RKI +LD HI LA AGL A
Sbjct:    3 YDRAITVFSPDGHLFQVEYAQEAVRKGLCAVGVKGKDSIIFAVEKKSVQKLQDSRTTRKIYKLDEHIYLASAGLSA 78          
BLAST of CF504448 vs. ExPASy Swiss-Prot
Match: PSA7B_XENLA (Proteasome subunit alpha type-7-B OS=Xenopus laevis GN=psma7-B PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 2.056e-24
Identity = 55/76 (72.37%), Postives = 63/76 (82.89%), Query Frame = 3
Query:   36 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVRLDNHIALACAGLKA 263
            YDRAITVFSPDGHLFQVEYA EAV+KG+ AVGVRG + +VLGVEKKS  KLQD R+VRKI  LD ++ +A AGL A
Sbjct:    3 YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGKEIVVLGVEKKSVAKLQDERTVRKICALDENVFMAFAGLTA 78          
BLAST of CF504448 vs. ExPASy Swiss-Prot
Match: PSA7A_XENLA (Proteasome subunit alpha type-7-A OS=Xenopus laevis GN=psma7-A PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 2.056e-24
Identity = 55/76 (72.37%), Postives = 63/76 (82.89%), Query Frame = 3
Query:   36 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVRLDNHIALACAGLKA 263
            YDRAITVFSPDGHLFQVEYA EAV+KG+ AVGVRG + +VLGVEKKS  KLQD R+VRKI  LD ++ +A AGL A
Sbjct:    3 YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGKEIVVLGVEKKSVAKLQDERTVRKICALDENVFMAFAGLTA 78          
BLAST of CF504448 vs. ExPASy Swiss-Prot
Match: PSA7_RAT (Proteasome subunit alpha type-7 OS=Rattus norvegicus GN=Psma7 PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.020e-23
Identity = 53/72 (73.61%), Postives = 61/72 (84.72%), Query Frame = 3
Query:   36 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVRLDNHIALACA 251
            YDRAITVFSPDGHLFQVEYA EAV+KG+ AVGVRG D +VLGVEKKS  KLQD R+VRKI  LD+++ +A A
Sbjct:    3 YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGRDIVVLGVEKKSVAKLQDERTVRKICALDDNVCMAFA 74          
BLAST of CF504448 vs. ExPASy Swiss-Prot
Match: PSA72_DROME (Proteasome subunit alpha type-7-1A OS=Drosophila melanogaster GN=Pros28.1A PE=2 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 2.968e-23
Identity = 52/78 (66.67%), Postives = 63/78 (80.77%), Query Frame = 3
Query:   30 ARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVRLDNHIALACAGLKA 263
            +RY RA+T+FSPDGHL QVEYA EAVRKG+ AVGVRG + +VLGVEK S  ++Q+ R+VRKI  LD H+ALA AGL A
Sbjct:    3 SRYGRALTIFSPDGHLLQVEYAQEAVRKGSTAVGVRGANCVVLGVEKSSVSEMQEDRTVRKISMLDRHVALAFAGLTA 80          
BLAST of CF504448 vs. ExPASy Swiss-Prot
Match: PSA71_DROVI (Proteasome subunit alpha type-7-1 OS=Drosophila virilis GN=Pros28.1 PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.598e-22
Identity = 52/76 (68.42%), Postives = 62/76 (81.58%), Query Frame = 3
Query:   30 ARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVRLDNHIALACAGL 257
            +RYDRA+T+FSPDG L QVEYA EAVRKG+ AVGVRG + +VLGVEKKS  KLQ+ R+VRKI  LD H+ +A AGL
Sbjct:    3 SRYDRAVTIFSPDGRLLQVEYAQEAVRKGSTAVGVRGGNCVVLGVEKKSVAKLQEDRTVRKICVLD-HVVMAFAGL 77          
BLAST of CF504448 vs. ExPASy Swiss-Prot
Match: PSA7_YEAST (Proteasome component PRE6 OS=Saccharomyces cerevisiae GN=PRE6 PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 4.739e-21
Identity = 45/80 (56.25%), Postives = 67/80 (83.75%), Query Frame = 3
Query:   27 MARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSR-SVRKIVRLDNHIALACAGLKA 263
            M+ YDRA+++FSPDGH+FQVEYALEAV++G  AVGV+G + +VLG E++ST+KLQD+R +  K+ ++D+H+ L+ +GL A
Sbjct:    1 MSGYDRALSIFSPDGHIFQVEYALEAVKRGTCAVGVKGKNCVVLGCERRSTLKLQDTRITPSKVSKIDSHVVLSFSGLNA 80          
BLAST of CF504448 vs. ExPASy Swiss-Prot
Match: PSA73_DROME (Proteasome subunit alpha type-7-1B OS=Drosophila melanogaster GN=Pros28.1B PE=2 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 6.843e-20
Identity = 44/77 (57.14%), Postives = 59/77 (76.62%), Query Frame = 3
Query:   33 RYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVRLDNHIALACAGLKA 263
            RYDRA+T++SPDGHL QVEYA EAVR+G+  +G+R  + IV+GVEK+S   LQ+ R VRKI  LD+H+ +  +GL A
Sbjct:    4 RYDRAVTIYSPDGHLLQVEYAQEAVRRGSTVMGLRTNNAIVIGVEKRSVGDLQEERMVRKICMLDDHVVMTFSGLTA 80          
BLAST of CF504448 vs. ExPASy Swiss-Prot
Match: PSA7_SCHPO (Probable proteasome subunit alpha type-7 OS=Schizosaccharomyces pombe GN=SPBC106.16 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.396e-19
Identity = 44/79 (55.70%), Postives = 59/79 (74.68%), Query Frame = 3
Query:   27 MARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVRLDNHIALACAGLKA 263
            M+ YDRA++VFSPDG L QVEY  EAVR+G  A+ +RG + IV+GVE+K+  KLQ+  + +KI  +DNH+ LA AGL A
Sbjct:    1 MSGYDRALSVFSPDGRLLQVEYGQEAVRRGTTAIALRGNECIVIGVERKNVPKLQNVSNFQKIAMVDNHVCLAFAGLNA 79          
BLAST of CF504448 vs. ExPASy Swiss-Prot
Match: PSMA_METTE (Proteasome subunit alpha OS=Methanosarcina thermophila GN=psmA PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.875e-18
Identity = 43/76 (56.58%), Postives = 58/76 (76.32%), Query Frame = 3
Query:   36 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVRLDNHIALACAGLKA 263
            YDRAITVFSPDG LFQVEYA EAV++G  AVG++  D +VL V+K+ T +L ++ S+ KI ++D+HI  A +GL A
Sbjct:    7 YDRAITVFSPDGRLFQVEYAREAVKRGTTAVGIKAADGVVLLVDKRITSRLVEAESIEKIFQIDDHIGAATSGLVA 82          
The following BLAST results are available for this feature:
BLAST of CF504448 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 130
Match NameE-valueIdentityDescription
PSA7_TRYBB5.410e-2575.00Proteasome subunit alpha type-7 OS=Trypanosoma bru... [more]
PSA7B_XENLA2.056e-2472.37Proteasome subunit alpha type-7-B OS=Xenopus laevi... [more]
PSA7A_XENLA2.056e-2472.37Proteasome subunit alpha type-7-A OS=Xenopus laevi... [more]
PSA7_RAT1.020e-2373.61Proteasome subunit alpha type-7 OS=Rattus norvegic... [more]
PSA72_DROME2.968e-2366.67Proteasome subunit alpha type-7-1A OS=Drosophila m... [more]
PSA71_DROVI5.598e-2268.42Proteasome subunit alpha type-7-1 OS=Drosophila vi... [more]
PSA7_YEAST4.739e-2156.25Proteasome component PRE6 OS=Saccharomyces cerevis... [more]
PSA73_DROME6.843e-2057.14Proteasome subunit alpha type-7-1B OS=Drosophila m... [more]
PSA7_SCHPO3.396e-1955.70Probable proteasome subunit alpha type-7 OS=Schizo... [more]
PSMA_METTE2.875e-1856.58Proteasome subunit alpha OS=Methanosarcina thermop... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-937 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-18_D11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504448 ID=CF504448; Name=CF504448; organism=Citrus sinensis; type=EST; length=264bp
GAAGAGGAAAATTAGAGAGATTTGACATGGCGAGATACGATCGAGCAATC
ACTGTATTTTCACCGGATGGCCACCTGTTCCAAGTGGAATACGCACTAGA
GGCCGTACGCAAAGGCAACGCCGCCGTCGGCGTGCGCGGCACCGACACCA
TCGTTCTTGGCGTCGAAAAGAAATCCACTGTCAAGCTTCAGGACTCCAGA
TCAGTGAGGAAGATTGTCAGGTTGGATAATCATATTGCATTGGCCTGTGC
TGGACTTAAAGCAG
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