CF504448

Overview
NameCF504448
Unique NameCF504448
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length264
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504448 vs. ExPASy Swiss-Prot
Match: PSMA_METMA (Proteasome subunit alpha OS=Methanosarcina mazei GN=psmA PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.875e-18
Identity = 43/76 (56.58%), Postives = 58/76 (76.32%), Query Frame = 3
Query:   36 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVRLDNHIALACAGLKA 263
            YDRAITVFSPDG LFQVEYA EAV++G  AVG++  D +VL V+K+ T +L ++ S+ KI ++D+HI  A +GL A
Sbjct:    9 YDRAITVFSPDGRLFQVEYAREAVKRGTTAVGIKAADGVVLLVDKRITSRLVEAESIEKIFQIDDHIGAATSGLVA 84          
BLAST of CF504448 vs. ExPASy Swiss-Prot
Match: PSMA_METKA (Proteasome subunit alpha OS=Methanopyrus kandleri GN=psmA PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.875e-18
Identity = 43/76 (56.58%), Postives = 57/76 (75.00%), Query Frame = 3
Query:   36 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVRLDNHIALACAGLKA 263
            YDRAITVFSPDG LFQVEYA EAV++G  A+G++  + +VLGV+K+ T KL +  S+ K+ ++D HI  A AGL A
Sbjct:   10 YDRAITVFSPDGRLFQVEYAREAVKRGTTALGIKVEEGVVLGVDKRVTSKLIEPESIEKVYQIDTHIGAATAGLVA 85          
BLAST of CF504448 vs. ExPASy Swiss-Prot
Match: PSMA_METBF (Proteasome subunit alpha OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=psmA PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.875e-18
Identity = 43/76 (56.58%), Postives = 58/76 (76.32%), Query Frame = 3
Query:   36 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVRLDNHIALACAGLKA 263
            YDRAITVFSPDG LFQVEYA EAV++G  AVG++  D +VL V+K+ T +L ++ S+ KI ++D+HI  A +GL A
Sbjct:    9 YDRAITVFSPDGRLFQVEYAREAVKRGTTAVGIKAADGVVLLVDKRITSRLVEAESIEKIFQIDDHIGAATSGLVA 84          
BLAST of CF504448 vs. ExPASy Swiss-Prot
Match: PSMA_METAC (Proteasome subunit alpha OS=Methanosarcina acetivorans GN=psmA PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.755e-18
Identity = 43/76 (56.58%), Postives = 57/76 (75.00%), Query Frame = 3
Query:   36 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVRLDNHIALACAGLKA 263
            YDRAITVFSPDG LFQVEYA EAV++G  AVG++  D +VL V+K+ T +L ++ S+ KI ++D HI  A +GL A
Sbjct:    7 YDRAITVFSPDGRLFQVEYAREAVKRGTTAVGIKAADGVVLLVDKRITSRLVEAESIEKIFQIDEHIGAATSGLVA 82          
BLAST of CF504448 vs. ExPASy Swiss-Prot
Match: PSMA_THESM (Proteasome subunit alpha OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=psmA PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.904e-18
Identity = 46/78 (58.97%), Postives = 58/78 (74.36%), Query Frame = 3
Query:   30 ARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVRLDNHIALACAGLKA 263
            A YDRAITVFSPDG LFQV+YA EAV++G  AVGV+  D +VL VEK+ T KL +  S  KI ++D+HIA A +G+ A
Sbjct:    8 AGYDRAITVFSPDGRLFQVQYAREAVKRGATAVGVKCKDGVVLAVEKRVTSKLIEPESYEKIFQIDDHIAAASSGIIA 85          
BLAST of CF504448 vs. ExPASy Swiss-Prot
Match: PSMA_METTH (Proteasome subunit alpha OS=Methanobacterium thermoautotrophicum GN=psmA PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.904e-18
Identity = 44/84 (52.38%), Postives = 60/84 (71.43%), Query Frame = 3
Query:   12 LERFDMARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVRLDNHIALACAGLKA 263
            ++    A YDRAITVFSPDG LFQVEYA EAV++G  ++GV+  + IVL V+K+ T KL + +S+ KI ++D HI  A +GL A
Sbjct:    1 MQPLQSAGYDRAITVFSPDGRLFQVEYAREAVKRGTTSLGVKSKEGIVLVVDKRPTSKLVEPKSIEKIFQIDEHIGAATSGLVA 84          
BLAST of CF504448 vs. ExPASy Swiss-Prot
Match: PSMA_METS3 (Proteasome subunit alpha OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=psmA PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.405e-18
Identity = 42/78 (53.85%), Postives = 59/78 (75.64%), Query Frame = 3
Query:   30 ARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVRLDNHIALACAGLKA 263
            A YDRAITVFSPDG LFQVEYA EAV++G  ++G++ ++ IVL V+K++T  L ++ S+ KI ++D HI  A +GL A
Sbjct:    7 AGYDRAITVFSPDGRLFQVEYAREAVKRGTTSIGIKCSEGIVLAVDKRTTSNLVEATSIEKIFKIDEHIGAATSGLVA 84          
BLAST of CF504448 vs. ExPASy Swiss-Prot
Match: PSMA_METPE (Proteasome subunit alpha OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=psmA PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.366e-18
Identity = 43/74 (58.11%), Postives = 56/74 (75.68%), Query Frame = 3
Query:   36 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVRLDNHIALACAGL 257
            YDRAITVFSPDG L+QVEYA EAV++G  AVG++  D IVL V+K+   KL +  S+ KI ++DNHI +A +GL
Sbjct:    9 YDRAITVFSPDGRLYQVEYAREAVKRGTTAVGIKCNDGIVLLVDKRVNSKLLEPSSIEKIFKIDNHIGVASSGL 82          
BLAST of CF504448 vs. ExPASy Swiss-Prot
Match: PSMA_METB6 (Proteasome subunit alpha OS=Methanoregula boonei (strain 6A8) GN=psmA PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.366e-18
Identity = 42/74 (56.76%), Postives = 57/74 (77.03%), Query Frame = 3
Query:   36 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVRLDNHIALACAGL 257
            YDRAITVFSPDG L+QVEYA EAV++G  AVG++  D +VL V+K+ + KL +S S+ KI ++D HI +A +GL
Sbjct:    9 YDRAITVFSPDGRLYQVEYAREAVKRGTTAVGIKAHDGVVLIVDKRVSSKLLESSSIEKIFKIDEHIGVASSGL 82          
BLAST of CF504448 vs. ExPASy Swiss-Prot
Match: PSA5_SCHPO (Probable proteasome subunit alpha type-5 OS=Schizosaccharomyces pombe GN=SPAC323.02c PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.366e-18
Identity = 40/78 (51.28%), Postives = 56/78 (71.79%), Query Frame = 3
Query:   30 ARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVRLDNHIALACAGLKA 263
            + YDR +  FSP+G LFQVEYA+EA++ G+ A+GV+  D +VLGVEK+ T  L +S SV K+  +D+HI  A +GL A
Sbjct:    6 SEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGVKTKDAVVLGVEKRLTSPLMESHSVEKLFEIDSHIGCAISGLTA 83          
The following BLAST results are available for this feature:
BLAST of CF504448 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 130
Match NameE-valueIdentityDescription
PSMA_METMA2.875e-1856.58Proteasome subunit alpha OS=Methanosarcina mazei G... [more]
PSMA_METKA2.875e-1856.58Proteasome subunit alpha OS=Methanopyrus kandleri ... [more]
PSMA_METBF2.875e-1856.58Proteasome subunit alpha OS=Methanosarcina barkeri... [more]
PSMA_METAC3.755e-1856.58Proteasome subunit alpha OS=Methanosarcina acetivo... [more]
PSMA_THESM4.904e-1858.97Proteasome subunit alpha OS=Thermococcus sibiricus... [more]
PSMA_METTH4.904e-1852.38Proteasome subunit alpha OS=Methanobacterium therm... [more]
PSMA_METS36.405e-1853.85Proteasome subunit alpha OS=Methanobrevibacter smi... [more]
PSMA_METPE8.366e-1858.11Proteasome subunit alpha OS=Methanosphaerula palus... [more]
PSMA_METB68.366e-1856.76Proteasome subunit alpha OS=Methanoregula boonei (... [more]
PSA5_SCHPO8.366e-1851.28Probable proteasome subunit alpha type-5 OS=Schizo... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-937 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-18_D11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504448 ID=CF504448; Name=CF504448; organism=Citrus sinensis; type=EST; length=264bp
GAAGAGGAAAATTAGAGAGATTTGACATGGCGAGATACGATCGAGCAATC
ACTGTATTTTCACCGGATGGCCACCTGTTCCAAGTGGAATACGCACTAGA
GGCCGTACGCAAAGGCAACGCCGCCGTCGGCGTGCGCGGCACCGACACCA
TCGTTCTTGGCGTCGAAAAGAAATCCACTGTCAAGCTTCAGGACTCCAGA
TCAGTGAGGAAGATTGTCAGGTTGGATAATCATATTGCATTGGCCTGTGC
TGGACTTAAAGCAG
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