CF504448

Overview
NameCF504448
Unique NameCF504448
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length264
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504448 vs. ExPASy Swiss-Prot
Match: PSMA_METM6 (Proteasome subunit alpha OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=psmA PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.093e-17
Identity = 42/76 (55.26%), Postives = 57/76 (75.00%), Query Frame = 3
Query:   36 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVRLDNHIALACAGLKA 263
            YDRAIT+FSP+G L+QVEYA EAVR+G  AVG++  D +VL V+++ T KL D  S+ KI ++D+HI  A +GL A
Sbjct:   10 YDRAITIFSPEGRLYQVEYAREAVRRGTTAVGIKCNDGVVLAVDRRITSKLIDVSSIEKIFQIDDHIVAATSGLVA 85          
BLAST of CF504448 vs. ExPASy Swiss-Prot
Match: PSMA_METVS (Proteasome subunit alpha OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=psmA PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.427e-17
Identity = 42/76 (55.26%), Postives = 57/76 (75.00%), Query Frame = 3
Query:   36 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVRLDNHIALACAGLKA 263
            YDRAIT+FSP+G L+QVEYA EAVR+G  AVG++  D +VL V+++ T KL D  S+ KI ++D+HI  A +GL A
Sbjct:   10 YDRAITIFSPEGRLYQVEYAREAVRRGTTAVGIKCKDGVVLAVDRRITSKLIDVSSIEKIFQIDDHIVAATSGLVA 85          
BLAST of CF504448 vs. ExPASy Swiss-Prot
Match: PSMA_METMP (Proteasome subunit alpha OS=Methanococcus maripaludis GN=psmA PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.427e-17
Identity = 42/76 (55.26%), Postives = 57/76 (75.00%), Query Frame = 3
Query:   36 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVRLDNHIALACAGLKA 263
            YDRAIT+FSP+G L+QVEYA EAVR+G  AVG++  D +VL V+++ T KL D  S+ KI ++D+HI  A +GL A
Sbjct:   10 YDRAITIFSPEGRLYQVEYAREAVRRGTTAVGIKCKDGVVLAVDRRITSKLIDVSSIEKIFQIDDHIVAATSGLVA 85          
BLAST of CF504448 vs. ExPASy Swiss-Prot
Match: PSMA_METM7 (Proteasome subunit alpha OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=psmA PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.427e-17
Identity = 42/76 (55.26%), Postives = 57/76 (75.00%), Query Frame = 3
Query:   36 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVRLDNHIALACAGLKA 263
            YDRAIT+FSP+G L+QVEYA EAVR+G  AVG++  D +VL V+++ T KL D  S+ KI ++D+HI  A +GL A
Sbjct:   10 YDRAITIFSPEGRLYQVEYAREAVRRGTTAVGIKCKDGVVLAVDRRITSKLIDVSSIEKIFQIDDHIVAATSGLVA 85          
BLAST of CF504448 vs. ExPASy Swiss-Prot
Match: PSMA_METM5 (Proteasome subunit alpha OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=psmA PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.427e-17
Identity = 42/76 (55.26%), Postives = 57/76 (75.00%), Query Frame = 3
Query:   36 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVRLDNHIALACAGLKA 263
            YDRAIT+FSP+G L+QVEYA EAVR+G  AVG++  D +VL V+++ T KL D  S+ KI ++D+HI  A +GL A
Sbjct:   10 YDRAITIFSPEGRLYQVEYAREAVRRGTTAVGIKCKDGVVLAVDRRITSKLIDVSSIEKIFQIDDHIVAATSGLVA 85          
BLAST of CF504448 vs. ExPASy Swiss-Prot
Match: PSMA_METJA (Proteasome subunit alpha OS=Methanocaldococcus jannaschii GN=psmA PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.427e-17
Identity = 42/76 (55.26%), Postives = 57/76 (75.00%), Query Frame = 3
Query:   36 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVRLDNHIALACAGLKA 263
            YDRAITVFSP+G L+QVEYA EAVR+G  A+G+   D +VL V+++ T KL   RS+ KI ++D+H+A A +GL A
Sbjct:    9 YDRAITVFSPEGRLYQVEYAREAVRRGTTAIGIACKDGVVLAVDRRITSKLVKIRSIEKIFQIDDHVAAATSGLVA 84          
BLAST of CF504448 vs. ExPASy Swiss-Prot
Match: PSMA_PYRAB (Proteasome subunit alpha OS=Pyrococcus abyssi GN=psmA PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.864e-17
Identity = 45/78 (57.69%), Postives = 57/78 (73.08%), Query Frame = 3
Query:   30 ARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVRLDNHIALACAGLKA 263
            A YDRAITVFSPDG LFQV YA EAV++G  AVGV+  D +VL VEK+ T +L +  S  KI ++D+HIA A +G+ A
Sbjct:    8 AGYDRAITVFSPDGRLFQVNYAREAVKRGATAVGVKCKDGVVLAVEKRITSRLIEPESYEKIFQIDDHIAAASSGIIA 85          
BLAST of CF504448 vs. ExPASy Swiss-Prot
Match: PSMA_THEK1 (Proteasome subunit alpha OS=Thermococcus sp. (strain KS-1) GN=psmA PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.179e-17
Identity = 46/78 (58.97%), Postives = 56/78 (71.79%), Query Frame = 3
Query:   30 ARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVRLDNHIALACAGLKA 263
            A YDRAITVFSPDG LFQV YA EAV++G  AVGV+  D +VL VEK+ T KL +  S  KI  +D+HIA A +G+ A
Sbjct:    8 AGYDRAITVFSPDGRLFQVNYAREAVKRGATAVGVKWKDGVVLAVEKRITSKLIEPSSYEKIFLIDDHIAAAPSGIIA 85          
BLAST of CF504448 vs. ExPASy Swiss-Prot
Match: PSMA_PYRKO (Proteasome subunit alpha OS=Pyrococcus kodakaraensis GN=psmA PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.179e-17
Identity = 46/78 (58.97%), Postives = 56/78 (71.79%), Query Frame = 3
Query:   30 ARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVRLDNHIALACAGLKA 263
            A YDRAITVFSPDG LFQV YA EAV++G  AVGV+  D +VL VEK+ T KL +  S  KI  +D+HIA A +G+ A
Sbjct:    8 AGYDRAITVFSPDGRLFQVNYAREAVKRGATAVGVKWKDGVVLAVEKRITSKLIEPSSYEKIFLIDDHIAAAPSGIIA 85          
BLAST of CF504448 vs. ExPASy Swiss-Prot
Match: PSMA_THEON (Proteasome subunit alpha OS=Thermococcus onnurineus (strain NA1) GN=psmA PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.152e-17
Identity = 45/78 (57.69%), Postives = 57/78 (73.08%), Query Frame = 3
Query:   30 ARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVRLDNHIALACAGLKA 263
            A YDRAITVFSPDG LFQV YA EAV++G  AVGV+  + +VL VEK+ T KL +  S  KI ++D+HIA A +G+ A
Sbjct:    8 AGYDRAITVFSPDGRLFQVNYAREAVKRGATAVGVKWKEGVVLAVEKRITSKLIEPSSYEKIFQIDDHIAAAPSGIIA 85          
The following BLAST results are available for this feature:
BLAST of CF504448 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 130
Match NameE-valueIdentityDescription
PSMA_METM61.093e-1755.26Proteasome subunit alpha OS=Methanococcus maripalu... [more]
PSMA_METVS1.427e-1755.26Proteasome subunit alpha OS=Methanococcus vannieli... [more]
PSMA_METMP1.427e-1755.26Proteasome subunit alpha OS=Methanococcus maripalu... [more]
PSMA_METM71.427e-1755.26Proteasome subunit alpha OS=Methanococcus maripalu... [more]
PSMA_METM51.427e-1755.26Proteasome subunit alpha OS=Methanococcus maripalu... [more]
PSMA_METJA1.427e-1755.26Proteasome subunit alpha OS=Methanocaldococcus jan... [more]
PSMA_PYRAB1.864e-1757.69Proteasome subunit alpha OS=Pyrococcus abyssi GN=p... [more]
PSMA_THEK13.179e-1758.97Proteasome subunit alpha OS=Thermococcus sp. (stra... [more]
PSMA_PYRKO3.179e-1758.97Proteasome subunit alpha OS=Pyrococcus kodakaraens... [more]
PSMA_THEON4.152e-1757.69Proteasome subunit alpha OS=Thermococcus onnurineu... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-937 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-18_D11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504448 ID=CF504448; Name=CF504448; organism=Citrus sinensis; type=EST; length=264bp
GAAGAGGAAAATTAGAGAGATTTGACATGGCGAGATACGATCGAGCAATC
ACTGTATTTTCACCGGATGGCCACCTGTTCCAAGTGGAATACGCACTAGA
GGCCGTACGCAAAGGCAACGCCGCCGTCGGCGTGCGCGGCACCGACACCA
TCGTTCTTGGCGTCGAAAAGAAATCCACTGTCAAGCTTCAGGACTCCAGA
TCAGTGAGGAAGATTGTCAGGTTGGATAATCATATTGCATTGGCCTGTGC
TGGACTTAAAGCAG
back to top