CF504448

Overview
NameCF504448
Unique NameCF504448
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length264
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504448 vs. ExPASy Swiss-Prot
Match: PSMA_PYRHO (Proteasome subunit alpha OS=Pyrococcus horikoshii GN=psmA PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.152e-17
Identity = 44/78 (56.41%), Postives = 57/78 (73.08%), Query Frame = 3
Query:   30 ARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVRLDNHIALACAGLKA 263
            A YDRAITVFSPDG LFQV YA EAV++G  AVGV+  + +VL VEK+ T +L +  S  KI ++D+HIA A +G+ A
Sbjct:    8 AGYDRAITVFSPDGRLFQVNYAREAVKRGATAVGVKCNEGVVLAVEKRITSRLIEPESYEKIFQIDDHIAAASSGIIA 85          
BLAST of CF504448 vs. ExPASy Swiss-Prot
Match: PSA5_YEAST (Proteasome component PUP2 OS=Saccharomyces cerevisiae GN=PUP2 PE=1 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 4.152e-17
Identity = 39/78 (50.00%), Postives = 57/78 (73.08%), Query Frame = 3
Query:   30 ARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVRLDNHIALACAGLKA 263
            + YDR ++ FSP+G LFQVEY+LEA++ G+ A+G+   + +VLGVEK++T  L +S S+ KIV +D HI  A +GL A
Sbjct:    6 SEYDRGVSTFSPEGRLFQVEYSLEAIKLGSTAIGIATKEGVVLGVEKRATSPLLESDSIEKIVEIDRHIGCAMSGLTA 83          
BLAST of CF504448 vs. ExPASy Swiss-Prot
Match: PSMA_PYRFU (Proteasome subunit alpha OS=Pyrococcus furiosus GN=psmA PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.208e-16
Identity = 44/78 (56.41%), Postives = 57/78 (73.08%), Query Frame = 3
Query:   30 ARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVRLDNHIALACAGLKA 263
            A YDRAITVFSPDG LFQV YA EAV++G  AVGV+  + +VL VEK+ T +L +  S  KI ++D+HIA A +G+ A
Sbjct:    8 AGYDRAITVFSPDGRLFQVNYAREAVKRGATAVGVKCGEGVVLAVEKRITSRLIEPDSYEKIFQIDDHIAAASSGIIA 85          
BLAST of CF504448 vs. ExPASy Swiss-Prot
Match: PSMA_HALWD (Proteasome subunit alpha OS=Haloquadratum walsbyi (strain DSM 16790) GN=psmA PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.208e-16
Identity = 40/73 (54.79%), Postives = 53/73 (72.60%), Query Frame = 3
Query:   36 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVRLDNHIALACAG 254
            YDR IT+FSPDG L+QVEYA EAV++G A+VG+R  D IVL  +K+S   L +  SV KI + D+H+ +A AG
Sbjct:   10 YDRGITIFSPDGRLYQVEYAREAVKRGTASVGIRTPDGIVLAADKRSRSPLMEPTSVEKIHKTDDHVGIASAG 82          
BLAST of CF504448 vs. ExPASy Swiss-Prot
Match: PSMA1_HALMA (Proteasome subunit alpha 1 OS=Haloarcula marismortui GN=psmA1 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.208e-16
Identity = 40/73 (54.79%), Postives = 54/73 (73.97%), Query Frame = 3
Query:   36 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVRLDNHIALACAG 254
            YDR IT+FSPDG L+QVEYA EAV++G A++GVR +D +VL V+K+    L +  SV KI + D+HI +A AG
Sbjct:   10 YDRGITIFSPDGRLYQVEYAREAVKRGTASIGVRTSDGVVLAVDKRIRSPLMERSSVEKIHKADDHIGIASAG 82          
BLAST of CF504448 vs. ExPASy Swiss-Prot
Match: PSMA_THEGJ (Proteasome subunit alpha OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=psmA PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.060e-16
Identity = 44/78 (56.41%), Postives = 56/78 (71.79%), Query Frame = 3
Query:   30 ARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVRLDNHIALACAGLKA 263
            A YDRAITVFSPDG LFQV YA EAV++G  AVGV+    +VL VEK+ T +L +  S  KI ++D+HIA A +G+ A
Sbjct:    8 AGYDRAITVFSPDGRLFQVNYAREAVKRGATAVGVKWKGGVVLAVEKRITSRLIEPSSYEKIFQIDDHIAAAPSGIIA 85          
BLAST of CF504448 vs. ExPASy Swiss-Prot
Match: PSMA_METMJ (Proteasome subunit alpha OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=psmA PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.060e-16
Identity = 40/74 (54.05%), Postives = 57/74 (77.03%), Query Frame = 3
Query:   36 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVRLDNHIALACAGL 257
            YDRAITVFSPDG L+QVEYA EAV++G  AVG++ ++ +VL V+K+ T +L +  S+ KI ++D HI +A +GL
Sbjct:    9 YDRAITVFSPDGRLYQVEYAREAVKRGTTAVGIKCSEGVVLIVDKRVTSRLLEPVSIEKIFKIDAHIGVASSGL 82          
BLAST of CF504448 vs. ExPASy Swiss-Prot
Match: PSMA1_HALVO (Proteasome subunit alpha 1 OS=Halobacterium volcanii GN=psmA1 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.515e-16
Identity = 39/73 (53.42%), Postives = 53/73 (72.60%), Query Frame = 3
Query:   36 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVRLDNHIALACAG 254
            YDR IT+FSPDG L+QVEYA EAV++G A++GVR  + +VL  +K+S   L +  SV KI + D+HI +A AG
Sbjct:   10 YDRGITIFSPDGRLYQVEYAREAVKRGTASIGVRTPEGVVLAADKRSRSPLMEPTSVEKIHKADDHIGIASAG 82          
BLAST of CF504448 vs. ExPASy Swiss-Prot
Match: PSMA_NATPD (Proteasome subunit alpha OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=psmA PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 5.995e-16
Identity = 39/73 (53.42%), Postives = 53/73 (72.60%), Query Frame = 3
Query:   36 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVRLDNHIALACAG 254
            YDR IT+FSPDG L+QVEYA EAV++G A++G+R  D +VL V+K+    L +  SV KI + D+HI +A AG
Sbjct:   10 YDRGITIFSPDGRLYQVEYAREAVKRGTASIGIRTEDGVVLVVDKRIRSPLMERTSVEKIHKADDHIGIASAG 82          
BLAST of CF504448 vs. ExPASy Swiss-Prot
Match: PSA5_ORYSJ (Proteasome subunit alpha type-5 OS=Oryza sativa subsp. japonica GN=PAE1 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.336e-15
Identity = 38/76 (50.00%), Postives = 53/76 (69.74%), Query Frame = 3
Query:   36 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVRLDNHIALACAGLKA 263
            YDR +  FSP+G LFQVEYA+EA++ G+ A+G++  D +VL VEK+ T  L +  SV KI+ +D HI  A +GL A
Sbjct:    8 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKDGVVLAVEKRVTSPLLEPSSVEKIMEIDEHIGCAMSGLIA 83          
The following BLAST results are available for this feature:
BLAST of CF504448 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 130
Match NameE-valueIdentityDescription
PSMA_PYRHO4.152e-1756.41Proteasome subunit alpha OS=Pyrococcus horikoshii ... [more]
PSA5_YEAST4.152e-1750.00Proteasome component PUP2 OS=Saccharomyces cerevis... [more]
PSMA_PYRFU1.208e-1656.41Proteasome subunit alpha OS=Pyrococcus furiosus GN... [more]
PSMA_HALWD1.208e-1654.79Proteasome subunit alpha OS=Haloquadratum walsbyi ... [more]
PSMA1_HALMA1.208e-1654.79Proteasome subunit alpha 1 OS=Haloarcula marismort... [more]
PSMA_THEGJ2.060e-1656.41Proteasome subunit alpha OS=Thermococcus gammatole... [more]
PSMA_METMJ2.060e-1654.05Proteasome subunit alpha OS=Methanoculleus marisni... [more]
PSMA1_HALVO3.515e-1653.42Proteasome subunit alpha 1 OS=Halobacterium volcan... [more]
PSMA_NATPD5.995e-1653.42Proteasome subunit alpha OS=Natronomonas pharaonis... [more]
PSA5_ORYSJ1.336e-1550.00Proteasome subunit alpha type-5 OS=Oryza sativa su... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-937 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-18_D11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504448 ID=CF504448; Name=CF504448; organism=Citrus sinensis; type=EST; length=264bp
GAAGAGGAAAATTAGAGAGATTTGACATGGCGAGATACGATCGAGCAATC
ACTGTATTTTCACCGGATGGCCACCTGTTCCAAGTGGAATACGCACTAGA
GGCCGTACGCAAAGGCAACGCCGCCGTCGGCGTGCGCGGCACCGACACCA
TCGTTCTTGGCGTCGAAAAGAAATCCACTGTCAAGCTTCAGGACTCCAGA
TCAGTGAGGAAGATTGTCAGGTTGGATAATCATATTGCATTGGCCTGTGC
TGGACTTAAAGCAG
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