CF504448

Overview
NameCF504448
Unique NameCF504448
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length264
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504448 vs. ExPASy Swiss-Prot
Match: PSA5B_ARATH (Proteasome subunit alpha type-5-B OS=Arabidopsis thaliana GN=PAE2 PE=1 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 1.336e-15
Identity = 38/76 (50.00%), Postives = 54/76 (71.05%), Query Frame = 3
Query:   36 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVRLDNHIALACAGLKA 263
            YDR +  FSP+G LFQVEYA+EA++ G+ A+GV+  + +VL VEK+ T  L +  SV KI+ +D+HI  A +GL A
Sbjct:    8 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGVKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDDHIGCAMSGLIA 83          
BLAST of CF504448 vs. ExPASy Swiss-Prot
Match: PSA5A_ARATH (Proteasome subunit alpha type-5-A OS=Arabidopsis thaliana GN=PAE1 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.336e-15
Identity = 38/76 (50.00%), Postives = 54/76 (71.05%), Query Frame = 3
Query:   36 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVRLDNHIALACAGLKA 263
            YDR +  FSP+G LFQVEYA+EA++ G+ A+GV+  + +VL VEK+ T  L +  SV KI+ +D+HI  A +GL A
Sbjct:    8 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGVKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDDHIGCAMSGLIA 83          
BLAST of CF504448 vs. ExPASy Swiss-Prot
Match: PSMA_HALSA (Proteasome subunit alpha OS=Halobacterium salinarium GN=psmA PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.278e-15
Identity = 37/73 (50.68%), Postives = 54/73 (73.97%), Query Frame = 3
Query:   36 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVRLDNHIALACAG 254
            YDR IT+FSPDG L+QVEYA EAV++G A++GVR  + +VL V+K++   L +  SV K+ ++D+H+  A AG
Sbjct:   10 YDRGITIFSPDGRLYQVEYAREAVKRGTASIGVRTPEGVVLVVDKQTRSPLLEGSSVEKLHKIDDHVGAASAG 82          
BLAST of CF504448 vs. ExPASy Swiss-Prot
Match: PSMA_HALS3 (Proteasome subunit alpha OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=psmA PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.278e-15
Identity = 37/73 (50.68%), Postives = 54/73 (73.97%), Query Frame = 3
Query:   36 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVRLDNHIALACAG 254
            YDR IT+FSPDG L+QVEYA EAV++G A++GVR  + +VL V+K++   L +  SV K+ ++D+H+  A AG
Sbjct:   10 YDRGITIFSPDGRLYQVEYAREAVKRGTASIGVRTPEGVVLVVDKQTRSPLLEGSSVEKLHKIDDHVGAASAG 82          
BLAST of CF504448 vs. ExPASy Swiss-Prot
Match: PSMA_ARCFU (Proteasome subunit alpha OS=Archaeoglobus fulgidus GN=psmA PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.278e-15
Identity = 38/76 (50.00%), Postives = 55/76 (72.37%), Query Frame = 3
Query:   36 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVRLDNHIALACAGLKA 263
            YDRAITVFSPDG LFQVEYA EAV++G  A+G++  + ++L  +K+   KL ++ ++ KI ++D HI  A +GL A
Sbjct:    8 YDRAITVFSPDGRLFQVEYAREAVKRGATAIGIKCKEGVILIADKRVGSKLLEADTIEKIYKIDEHICAATSGLVA 83          
BLAST of CF504448 vs. ExPASy Swiss-Prot
Match: PSA5_MOUSE (Proteasome subunit alpha type-5 OS=Mus musculus GN=Psma5 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.975e-15
Identity = 36/78 (46.15%), Postives = 54/78 (69.23%), Query Frame = 3
Query:   30 ARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVRLDNHIALACAGLKA 263
            + YDR +  FSP+G LFQVEYA+EA++ G+ A+G++ ++ + L VEK+ T  L +  S+ KIV +D HI  A +GL A
Sbjct:    6 SEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGIQTSEGVCLAVEKRITSPLMEPSSIEKIVEIDAHIGCAMSGLIA 83          
BLAST of CF504448 vs. ExPASy Swiss-Prot
Match: PSA5_HUMAN (Proteasome subunit alpha type-5 OS=Homo sapiens GN=PSMA5 PE=1 SV=3)

HSP 1 Score: 80.4925 bits (197), Expect = 2.975e-15
Identity = 36/78 (46.15%), Postives = 54/78 (69.23%), Query Frame = 3
Query:   30 ARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVRLDNHIALACAGLKA 263
            + YDR +  FSP+G LFQVEYA+EA++ G+ A+G++ ++ + L VEK+ T  L +  S+ KIV +D HI  A +GL A
Sbjct:    6 SEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGIQTSEGVCLAVEKRITSPLMEPSSIEKIVEIDAHIGCAMSGLIA 83          
BLAST of CF504448 vs. ExPASy Swiss-Prot
Match: PSA5_BOVIN (Proteasome subunit alpha type-5 OS=Bos taurus GN=PSMA5 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.975e-15
Identity = 36/78 (46.15%), Postives = 54/78 (69.23%), Query Frame = 3
Query:   30 ARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVRLDNHIALACAGLKA 263
            + YDR +  FSP+G LFQVEYA+EA++ G+ A+G++ ++ + L VEK+ T  L +  S+ KIV +D HI  A +GL A
Sbjct:    6 SEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGIQTSEGVCLAVEKRITSPLMEPSSIEKIVEIDAHIGCAMSGLIA 83          
BLAST of CF504448 vs. ExPASy Swiss-Prot
Match: PSMA_SULSO (Proteasome subunit alpha OS=Sulfolobus solfataricus GN=psmA PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.886e-15
Identity = 35/74 (47.30%), Postives = 52/74 (70.27%), Query Frame = 3
Query:   36 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVRLDNHIALACAGL 257
            YDRAIT+FSPDG L+QV+YA EAV+KG  A+G++   ++V+  EK+    L D  S+ K+  +D+H+  + AGL
Sbjct:   10 YDRAITIFSPDGSLYQVDYAFEAVKKGWTAIGIKSKSSVVIASEKRKAQSLLDVDSIEKVFLIDDHVGCSFAGL 83          
BLAST of CF504448 vs. ExPASy Swiss-Prot
Match: PSA5_SOYBN (Proteasome subunit alpha type-5 OS=Glycine max GN=PAE1 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.886e-15
Identity = 37/76 (48.68%), Postives = 53/76 (69.74%), Query Frame = 3
Query:   36 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVRLDNHIALACAGLKA 263
            YDR +  FSP+G LFQVEYA+EA++ G+ A+G++  + +VL VEK+ T  L +  SV KI+ +D HI  A +GL A
Sbjct:    8 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIA 83          
The following BLAST results are available for this feature:
BLAST of CF504448 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 130
Match NameE-valueIdentityDescription
PSA5B_ARATH1.336e-1550.00Proteasome subunit alpha type-5-B OS=Arabidopsis t... [more]
PSA5A_ARATH1.336e-1550.00Proteasome subunit alpha type-5-A OS=Arabidopsis t... [more]
PSMA_HALSA2.278e-1550.68Proteasome subunit alpha OS=Halobacterium salinari... [more]
PSMA_HALS32.278e-1550.68Proteasome subunit alpha OS=Halobacterium salinaru... [more]
PSMA_ARCFU2.278e-1550.00Proteasome subunit alpha OS=Archaeoglobus fulgidus... [more]
PSA5_MOUSE2.975e-1546.15Proteasome subunit alpha type-5 OS=Mus musculus GN... [more]
PSA5_HUMAN2.975e-1546.15Proteasome subunit alpha type-5 OS=Homo sapiens GN... [more]
PSA5_BOVIN2.975e-1546.15Proteasome subunit alpha type-5 OS=Bos taurus GN=P... [more]
PSMA_SULSO3.886e-1547.30Proteasome subunit alpha OS=Sulfolobus solfataricu... [more]
PSA5_SOYBN3.886e-1548.68Proteasome subunit alpha type-5 OS=Glycine max GN=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-937 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-18_D11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504448 ID=CF504448; Name=CF504448; organism=Citrus sinensis; type=EST; length=264bp
GAAGAGGAAAATTAGAGAGATTTGACATGGCGAGATACGATCGAGCAATC
ACTGTATTTTCACCGGATGGCCACCTGTTCCAAGTGGAATACGCACTAGA
GGCCGTACGCAAAGGCAACGCCGCCGTCGGCGTGCGCGGCACCGACACCA
TCGTTCTTGGCGTCGAAAAGAAATCCACTGTCAAGCTTCAGGACTCCAGA
TCAGTGAGGAAGATTGTCAGGTTGGATAATCATATTGCATTGGCCTGTGC
TGGACTTAAAGCAG
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