CF504448

Overview
NameCF504448
Unique NameCF504448
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length264
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3557 contig Csv1_Contig3557:405..668. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504448 vs. ExPASy Swiss-Prot
Match: PSA5_CAEEL (Proteasome subunit alpha type-5 OS=Caenorhabditis elegans GN=pas-5 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.886e-15
Identity = 35/78 (44.87%), Postives = 56/78 (71.79%), Query Frame = 3
Query:   30 ARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVRLDNHIALACAGLKA 263
            + YDR +  FSP+G LFQVEYA+EAV+ G+ ++G++ ++ ++L  EK+ST KL  + ++ KI ++D HI +  AGL A
Sbjct:    6 SEYDRGVNTFSPEGRLFQVEYAIEAVKLGSTSIGIKTSEGVLLAAEKRSTSKLMVNDAIEKISKVDQHIGVTFAGLIA 83          
BLAST of CF504448 vs. ExPASy Swiss-Prot
Match: PSMA_SULIY (Proteasome subunit alpha OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=psmA PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.657e-15
Identity = 35/74 (47.30%), Postives = 51/74 (68.92%), Query Frame = 3
Query:   36 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVRLDNHIALACAGL 257
            YDRAIT+FSPDG L+QV+YA EAV+KG  A+G++    +V+  EK+    L D  S+ K+  +D+H+  + AGL
Sbjct:   10 YDRAITIFSPDGSLYQVDYAFEAVKKGWTAIGIKSKSGVVIASEKRKAQSLLDVDSIEKVFLIDDHVGCSFAGL 83          
BLAST of CF504448 vs. ExPASy Swiss-Prot
Match: PSMA_SULIN (Proteasome subunit alpha OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=psmA PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.657e-15
Identity = 35/74 (47.30%), Postives = 51/74 (68.92%), Query Frame = 3
Query:   36 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVRLDNHIALACAGL 257
            YDRAIT+FSPDG L+QV+YA EAV+KG  A+G++    +V+  EK+    L D  S+ K+  +D+H+  + AGL
Sbjct:   10 YDRAITIFSPDGSLYQVDYAFEAVKKGWTAIGIKSKSGVVIASEKRKAQSLLDVDSIEKVFLIDDHVGCSFAGL 83          
BLAST of CF504448 vs. ExPASy Swiss-Prot
Match: PSMA_SULIM (Proteasome subunit alpha OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=psmA PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.657e-15
Identity = 35/74 (47.30%), Postives = 51/74 (68.92%), Query Frame = 3
Query:   36 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVRLDNHIALACAGL 257
            YDRAIT+FSPDG L+QV+YA EAV+KG  A+G++    +V+  EK+    L D  S+ K+  +D+H+  + AGL
Sbjct:   10 YDRAITIFSPDGSLYQVDYAFEAVKKGWTAIGIKSKSGVVIASEKRKAQSLLDVDSIEKVFLIDDHVGCSFAGL 83          
BLAST of CF504448 vs. ExPASy Swiss-Prot
Match: PSMA_SULIL (Proteasome subunit alpha OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=psmA PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.657e-15
Identity = 35/74 (47.30%), Postives = 51/74 (68.92%), Query Frame = 3
Query:   36 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVRLDNHIALACAGL 257
            YDRAIT+FSPDG L+QV+YA EAV+KG  A+G++    +V+  EK+    L D  S+ K+  +D+H+  + AGL
Sbjct:   10 YDRAITIFSPDGSLYQVDYAFEAVKKGWTAIGIKSKSGVVIASEKRKAQSLLDVDSIEKVFLIDDHVGCSFAGL 83          
BLAST of CF504448 vs. ExPASy Swiss-Prot
Match: PSMA_SULIK (Proteasome subunit alpha OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=psmA PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.657e-15
Identity = 35/74 (47.30%), Postives = 51/74 (68.92%), Query Frame = 3
Query:   36 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVRLDNHIALACAGL 257
            YDRAIT+FSPDG L+QV+YA EAV+KG  A+G++    +V+  EK+    L D  S+ K+  +D+H+  + AGL
Sbjct:   10 YDRAITIFSPDGSLYQVDYAFEAVKKGWTAIGIKSKSGVVIASEKRKAQSLLDVDSIEKVFLIDDHVGCSFAGL 83          
BLAST of CF504448 vs. ExPASy Swiss-Prot
Match: PSMA_SULIA (Proteasome subunit alpha OS=Sulfolobus islandicus (strain M.16.27) GN=psmA PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.657e-15
Identity = 35/74 (47.30%), Postives = 51/74 (68.92%), Query Frame = 3
Query:   36 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVRLDNHIALACAGL 257
            YDRAIT+FSPDG L+QV+YA EAV+KG  A+G++    +V+  EK+    L D  S+ K+  +D+H+  + AGL
Sbjct:   10 YDRAITIFSPDGSLYQVDYAFEAVKKGWTAIGIKSKSGVVIASEKRKAQSLLDVDSIEKVFLIDDHVGCSFAGL 83          
BLAST of CF504448 vs. ExPASy Swiss-Prot
Match: PSMA_PICTO (Proteasome subunit alpha OS=Picrophilus torridus GN=psmA PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.657e-15
Identity = 40/76 (52.63%), Postives = 53/76 (69.74%), Query Frame = 3
Query:   36 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVRLDNHIALACAGLKA 263
            YDRAITVFSPDG LFQVEYA EAV+KG+ A+G++  D + L  EKK   +L +  S+ KI  +D+ +A   +GL A
Sbjct:    8 YDRAITVFSPDGRLFQVEYAREAVKKGSTALGIKFKDGVALISEKKVRSRLVEKTSLEKIQLIDDRVAAVTSGLVA 83          
BLAST of CF504448 vs. ExPASy Swiss-Prot
Match: PSMA2_HALMA (Proteasome subunit alpha 2 OS=Haloarcula marismortui GN=psmA2 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.657e-15
Identity = 36/73 (49.32%), Postives = 52/73 (71.23%), Query Frame = 3
Query:   36 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVRLDNHIALACAG 254
            YDR IT+FSPDG L+QVEYA EAV++G A+VGVR  D +V+  ++ +   L +  S+ KI  +D+H+ +A AG
Sbjct:    9 YDRGITIFSPDGRLYQVEYAREAVKRGTASVGVRTEDGVVIAADRHARSPLIERDSIEKIHEIDSHVGVASAG 81          
BLAST of CF504448 vs. ExPASy Swiss-Prot
Match: PSA73_DROVI (Proteasome subunit alpha type-7-1B OS=Drosophila virilis GN=Pros28.1B PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.657e-15
Identity = 41/79 (51.90%), Postives = 58/79 (73.42%), Query Frame = 3
Query:   27 MARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVRLDNHIALACAGLKA 263
            M+R+D ++ ++S DGHL QVEYA EAVRKG+  VG+R  + +VLGVEK++   LQ  R+ RKI ++D H+A+  AGL A
Sbjct:    1 MSRFDESVNIYS-DGHLLQVEYAQEAVRKGST-VGLRTKECVVLGVEKRAIDSLQIERTSRKIKKIDQHMAMTFAGLTA 77          
The following BLAST results are available for this feature:
BLAST of CF504448 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 130
Match NameE-valueIdentityDescription
PSA5_CAEEL3.886e-1544.87Proteasome subunit alpha type-5 OS=Caenorhabditis ... [more]
PSMA_SULIY8.657e-1547.30Proteasome subunit alpha OS=Sulfolobus islandicus ... [more]
PSMA_SULIN8.657e-1547.30Proteasome subunit alpha OS=Sulfolobus islandicus ... [more]
PSMA_SULIM8.657e-1547.30Proteasome subunit alpha OS=Sulfolobus islandicus ... [more]
PSMA_SULIL8.657e-1547.30Proteasome subunit alpha OS=Sulfolobus islandicus ... [more]
PSMA_SULIK8.657e-1547.30Proteasome subunit alpha OS=Sulfolobus islandicus ... [more]
PSMA_SULIA8.657e-1547.30Proteasome subunit alpha OS=Sulfolobus islandicus ... [more]
PSMA_PICTO8.657e-1552.63Proteasome subunit alpha OS=Picrophilus torridus G... [more]
PSMA2_HALMA8.657e-1549.32Proteasome subunit alpha 2 OS=Haloarcula marismort... [more]
PSA73_DROVI8.657e-1551.90Proteasome subunit alpha type-7-1B OS=Drosophila v... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-937 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-18_D11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504448 ID=CF504448; Name=CF504448; organism=Citrus sinensis; type=EST; length=264bp
GAAGAGGAAAATTAGAGAGATTTGACATGGCGAGATACGATCGAGCAATC
ACTGTATTTTCACCGGATGGCCACCTGTTCCAAGTGGAATACGCACTAGA
GGCCGTACGCAAAGGCAACGCCGCCGTCGGCGTGCGCGGCACCGACACCA
TCGTTCTTGGCGTCGAAAAGAAATCCACTGTCAAGCTTCAGGACTCCAGA
TCAGTGAGGAAGATTGTCAGGTTGGATAATCATATTGCATTGGCCTGTGC
TGGACTTAAAGCAG
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