CF504448

Overview
NameCF504448
Unique NameCF504448
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length264
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3557 contig Csv1_Contig3557:405..668. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504448 vs. ExPASy Swiss-Prot
Match: PSA5_DROME (Proteasome subunit alpha type-5 OS=Drosophila melanogaster GN=Prosalpha5 PE=1 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 1.131e-14
Identity = 37/78 (47.44%), Postives = 52/78 (66.67%), Query Frame = 3
Query:   30 ARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVRLDNHIALACAGLKA 263
            + YDR +  FSP+G LFQVEYA+EA++ G+ A+G+   + +VL VEK+ T  L    +V KIV +D HI  A +GL A
Sbjct:    6 SEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGICTPEGVVLAVEKRITSPLMVPSTVEKIVEVDKHIGCATSGLMA 83          
BLAST of CF504448 vs. ExPASy Swiss-Prot
Match: PSMA_THEVO (Proteasome subunit alpha OS=Thermoplasma volcanium GN=psmA PE=3 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 1.477e-14
Identity = 39/76 (51.32%), Postives = 56/76 (73.68%), Query Frame = 3
Query:   36 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVRLDNHIALACAGLKA 263
            YDRAITVFSPDG LFQVEYA EAV+KG+ A+G++ ++ ++L  +KK   KL +  S+ KI  +D+++A   +GL A
Sbjct:    8 YDRAITVFSPDGRLFQVEYAREAVKKGSTALGLKFSNGVLLISDKKIRSKLIEQNSLEKIQLIDDYVAAVTSGLVA 83          
BLAST of CF504448 vs. ExPASy Swiss-Prot
Match: PSMA_METS5 (Proteasome subunit alpha OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=psmA PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.929e-14
Identity = 37/74 (50.00%), Postives = 52/74 (70.27%), Query Frame = 3
Query:   36 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVRLDNHIALACAGL 257
            YDRAIT+FSPDG L+QV+YA EAV+KG   +GV+  + +V+  EKK   +L D  S+ K+  LD+H+  + AGL
Sbjct:   10 YDRAITIFSPDGSLYQVDYAFEAVKKGWTTLGVKTKNAVVILGEKKKASQLLDVDSIEKVFLLDDHVGCSFAGL 83          
BLAST of CF504448 vs. ExPASy Swiss-Prot
Match: PSMA_THEAC (Proteasome subunit alpha OS=Thermoplasma acidophilum GN=psmA PE=1 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 2.519e-14
Identity = 38/76 (50.00%), Postives = 55/76 (72.37%), Query Frame = 3
Query:   36 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVRLDNHIALACAGLKA 263
            YDRAITVFSPDG LFQVEYA EAV+KG+ A+G++  + ++L  +KK   +L +  S+ KI  +D+++A   +GL A
Sbjct:    8 YDRAITVFSPDGRLFQVEYAREAVKKGSTALGMKFANGVLLISDKKVRSRLIEQNSIEKIQLIDDYVAAVTSGLVA 83          
BLAST of CF504448 vs. ExPASy Swiss-Prot
Match: PSA4B_ORYSJ (Proteasome subunit alpha type-4-2 OS=Oryza sativa subsp. japonica GN=Os06g0167600 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.519e-14
Identity = 39/76 (51.32%), Postives = 53/76 (69.74%), Query Frame = 3
Query:   33 RYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVK-LQDSRSVRKIVRLDNHIALACAGL 257
            RYD   T+FSP+G L+QVEYA+EA+    +A+GV   D +VL  EKK T K LQ SRS  K+ ++D+H+A A AG+
Sbjct:    4 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSALGVLAADGVVLVGEKKVTSKLLQTSRSAEKMYKIDSHLACAVAGI 79          
BLAST of CF504448 vs. ExPASy Swiss-Prot
Match: PSA4B_ORYSI (Proteasome subunit alpha type-4-2 OS=Oryza sativa subsp. indica GN=OsI_021067 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.519e-14
Identity = 39/76 (51.32%), Postives = 53/76 (69.74%), Query Frame = 3
Query:   33 RYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVK-LQDSRSVRKIVRLDNHIALACAGL 257
            RYD   T+FSP+G L+QVEYA+EA+    +A+GV   D +VL  EKK T K LQ SRS  K+ ++D+H+A A AG+
Sbjct:    4 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSALGVLAADGVVLVGEKKVTSKLLQTSRSAEKMYKIDSHLACAVAGI 79          
BLAST of CF504448 vs. ExPASy Swiss-Prot
Match: PSA4A_ORYSJ (Proteasome subunit alpha type-4-1 OS=Oryza sativa subsp. japonica GN=PAC1 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.519e-14
Identity = 39/76 (51.32%), Postives = 53/76 (69.74%), Query Frame = 3
Query:   33 RYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVK-LQDSRSVRKIVRLDNHIALACAGL 257
            RYD   T+FSP+G L+QVEYA+EA+    +A+GV   D +VL  EKK T K LQ SRS  K+ ++D+H+A A AG+
Sbjct:    4 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSALGVLAADGVVLVGEKKVTSKLLQTSRSAEKMYKIDSHLACAVAGI 79          
BLAST of CF504448 vs. ExPASy Swiss-Prot
Match: PSA4A_ORYSI (Proteasome subunit alpha type-4-1 OS=Oryza sativa subsp. indica GN=OsI_021120 PE=1 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 2.519e-14
Identity = 39/76 (51.32%), Postives = 53/76 (69.74%), Query Frame = 3
Query:   33 RYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVK-LQDSRSVRKIVRLDNHIALACAGL 257
            RYD   T+FSP+G L+QVEYA+EA+    +A+GV   D +VL  EKK T K LQ SRS  K+ ++D+H+A A AG+
Sbjct:    4 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSALGVLAADGVVLVGEKKVTSKLLQTSRSAEKMYKIDSHLACAVAGI 79          
BLAST of CF504448 vs. ExPASy Swiss-Prot
Match: PSMA_PYRAE (Proteasome subunit alpha OS=Pyrobaculum aerophilum GN=psmA PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.290e-14
Identity = 40/79 (50.63%), Postives = 54/79 (68.35%), Query Frame = 3
Query:   27 MARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVRLDNHIALACAGLKA 263
            MA YDRAIT+FSP+G ++QVEYA EAV++G   VGV+    +VL  EK+    L DS S+ KI  +D H+A + +GL A
Sbjct:    6 MAGYDRAITIFSPEGKIYQVEYAGEAVKRGWPTVGVKCKAGVVLTAEKRKISALFDSSSLEKIYLIDEHVAASPSGLLA 84          
BLAST of CF504448 vs. ExPASy Swiss-Prot
Match: PSA5_RAT (Proteasome subunit alpha type-5 OS=Rattus norvegicus GN=Psma5 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.296e-14
Identity = 35/78 (44.87%), Postives = 52/78 (66.67%), Query Frame = 3
Query:   30 ARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTIVLGVEKKSTVKLQDSRSVRKIVRLDNHIALACAGLKA 263
            + YDR +  FSP+G LFQVEYA+E  + G+ A+G++ ++ + L VEK+ T  L +  S+ KIV +D HI  A +GL A
Sbjct:    6 SEYDRGVNTFSPEGRLFQVEYAIEGHKLGSTAIGIQTSEGVCLAVEKRITSPLMEPSSIEKIVEIDAHIGCAMSGLIA 83          
The following BLAST results are available for this feature:
BLAST of CF504448 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 130
Match NameE-valueIdentityDescription
PSA5_DROME1.131e-1447.44Proteasome subunit alpha type-5 OS=Drosophila mela... [more]
PSMA_THEVO1.477e-1451.32Proteasome subunit alpha OS=Thermoplasma volcanium... [more]
PSMA_METS51.929e-1450.00Proteasome subunit alpha OS=Metallosphaera sedula ... [more]
PSMA_THEAC2.519e-1450.00Proteasome subunit alpha OS=Thermoplasma acidophil... [more]
PSA4B_ORYSJ2.519e-1451.32Proteasome subunit alpha type-4-2 OS=Oryza sativa ... [more]
PSA4B_ORYSI2.519e-1451.32Proteasome subunit alpha type-4-2 OS=Oryza sativa ... [more]
PSA4A_ORYSJ2.519e-1451.32Proteasome subunit alpha type-4-1 OS=Oryza sativa ... [more]
PSA4A_ORYSI2.519e-1451.32Proteasome subunit alpha type-4-1 OS=Oryza sativa ... [more]
PSMA_PYRAE3.290e-1450.63Proteasome subunit alpha OS=Pyrobaculum aerophilum... [more]
PSA5_RAT4.296e-1444.87Proteasome subunit alpha type-5 OS=Rattus norvegic... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-937 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-18_D11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504448 ID=CF504448; Name=CF504448; organism=Citrus sinensis; type=EST; length=264bp
GAAGAGGAAAATTAGAGAGATTTGACATGGCGAGATACGATCGAGCAATC
ACTGTATTTTCACCGGATGGCCACCTGTTCCAAGTGGAATACGCACTAGA
GGCCGTACGCAAAGGCAACGCCGCCGTCGGCGTGCGCGGCACCGACACCA
TCGTTCTTGGCGTCGAAAAGAAATCCACTGTCAAGCTTCAGGACTCCAGA
TCAGTGAGGAAGATTGTCAGGTTGGATAATCATATTGCATTGGCCTGTGC
TGGACTTAAAGCAG
back to top